Wall clock time and date at job start Wed Apr 1 2020 04:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38253 * 120.00219 * 2 1 4 4 C 1.38211 * 120.00190 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99785 * 0.02562 * 4 3 2 6 6 C 1.38209 * 120.00051 * 0.02562 * 5 4 3 7 7 C 1.38219 * 120.00048 * 179.72701 * 2 1 3 8 8 C 1.50707 * 119.99720 * 359.97438 * 7 2 1 9 9 H 1.08996 * 109.47404 * 354.44621 * 8 7 2 10 10 C 1.53001 * 109.47081 * 234.44719 * 8 7 2 11 11 C 1.50702 * 109.47122 * 114.44905 * 8 7 2 12 12 O 1.21284 * 119.99937 * 359.97438 * 11 8 7 13 13 N 1.34768 * 120.00069 * 180.02562 * 11 8 7 14 14 C 1.46504 * 120.00300 * 180.02562 * 13 11 8 15 15 C 1.53003 * 109.47268 * 179.97438 * 14 13 11 16 16 H 1.08996 * 109.46922 * 65.00205 * 15 14 13 17 17 C 1.53004 * 109.46723 * 184.99864 * 15 14 13 18 18 N 1.46897 * 109.46976 * 305.00099 * 15 14 13 19 19 C 1.46897 * 110.99802 * 155.00194 * 18 15 14 20 20 C 1.50701 * 109.47099 * 179.97438 * 19 18 15 21 21 O 1.21295 * 119.99788 * 0.02562 * 20 19 18 22 22 N 1.34776 * 120.00303 * 180.02562 * 20 19 18 23 23 C 1.37095 * 120.00078 * 180.02562 * 22 20 19 24 24 H 1.08000 * 120.00277 * 359.97438 * 23 22 20 25 25 C 1.38953 * 119.99974 * 179.97438 * 23 22 20 26 26 N 1.31404 * 120.00237 * 179.97438 * 25 23 22 27 27 Si 1.86807 * 119.99672 * 359.97438 * 25 23 22 28 28 H 1.48503 * 109.46831 * 90.00468 * 27 25 23 29 29 H 1.48500 * 109.46706 * 209.99694 * 27 25 23 30 30 H 1.48491 * 109.47130 * 330.00082 * 27 25 23 31 31 H 1.08996 * 109.47701 * 96.01173 * 1 2 3 32 32 H 1.09002 * 109.47041 * 336.00916 * 1 2 3 33 33 H 1.09000 * 109.47175 * 216.01483 * 1 2 3 34 34 H 1.08003 * 119.99725 * 0.02562 * 3 2 1 35 35 H 1.07996 * 119.99725 * 180.02562 * 4 3 2 36 36 H 1.07999 * 119.99684 * 180.02562 * 5 4 3 37 37 H 1.08004 * 119.99962 * 180.02562 * 6 5 4 38 38 H 1.08996 * 109.46921 * 300.00197 * 10 8 7 39 39 H 1.09000 * 109.46893 * 59.99996 * 10 8 7 40 40 H 1.08993 * 109.47064 * 180.02562 * 10 8 7 41 41 H 0.97003 * 120.00078 * 359.97438 * 13 11 8 42 42 H 1.09003 * 109.46645 * 299.99652 * 14 13 11 43 43 H 1.09000 * 109.46769 * 59.99653 * 14 13 11 44 44 H 1.08996 * 109.47143 * 60.00476 * 17 15 14 45 45 H 1.09001 * 109.46568 * 179.97438 * 17 15 14 46 46 H 1.08992 * 109.46809 * 299.99869 * 17 15 14 47 47 H 1.00897 * 111.00681 * 31.04460 * 18 15 14 48 48 H 1.08995 * 109.47406 * 299.99541 * 19 18 15 49 49 H 1.08998 * 109.47334 * 60.00094 * 19 18 15 50 50 H 0.97001 * 119.99447 * 359.97438 * 22 20 19 51 51 H 0.97006 * 120.00323 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 -0.0001 0.0005 6 6 3.5806 -1.1970 -0.0005 7 6 2.1981 -1.1970 0.0057 8 6 1.4445 -2.5021 0.0125 9 1 0.3771 -2.3049 0.1114 10 6 1.9163 -3.3573 1.1902 11 6 1.7021 -3.2376 -1.2774 12 8 2.4259 -2.7499 -2.1195 13 7 1.1273 -4.4369 -1.4956 14 6 1.3781 -5.1522 -2.7493 15 6 0.6129 -6.4772 -2.7424 16 1 -0.4586 -6.2778 -2.7336 17 6 0.9721 -7.2799 -3.9944 18 7 0.9777 -7.2470 -1.5457 19 6 -0.0922 -8.1831 -1.1756 20 6 0.3172 -8.9537 0.0530 21 8 1.3942 -8.7434 0.5698 22 7 -0.5132 -9.8766 0.5776 23 6 -0.1409 -10.5772 1.6956 24 1 0.8181 -10.3900 2.1558 25 6 -0.9973 -11.5283 2.2368 26 7 -0.6403 -12.2002 3.3081 27 14 -2.6563 -11.8516 1.4412 28 1 -2.5156 -12.9208 0.4203 29 1 -3.6271 -12.2827 2.4789 30 1 -3.1446 -10.6085 0.7922 31 1 -0.3634 -0.1076 -1.0219 32 1 -0.3633 0.9389 0.4178 33 1 -0.3633 -0.8312 0.6043 34 1 1.6582 2.1326 0.0004 35 1 4.1203 2.1326 0.0010 36 1 5.3516 -0.0001 0.0014 37 1 4.1206 -2.1324 -0.0001 38 1 2.9837 -3.5545 1.0913 39 1 1.7300 -2.8253 2.1231 40 1 1.3716 -4.3014 1.1948 41 1 0.5481 -4.8269 -0.8222 42 1 1.0427 -4.5429 -3.5885 43 1 2.4455 -5.3500 -2.8474 44 1 2.0436 -7.4793 -4.0032 45 1 0.4273 -8.2240 -3.9893 46 1 0.7014 -6.7086 -4.8823 47 1 1.2041 -6.6344 -0.7766 48 1 -1.0062 -7.6267 -0.9680 49 1 -0.2682 -8.8771 -1.9974 50 1 -1.3746 -10.0444 0.1645 51 1 -1.2380 -12.8644 3.6857 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714308497.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:56 Heat of formation + Delta-G solvation = -49.821840 kcal Electronic energy + Delta-G solvation = -30185.790175 eV Core-core repulsion = 26084.782958 eV Total energy + Delta-G solvation = -4101.007217 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.66685 -39.22747 -38.56271 -37.08395 -34.56954 -34.18384 -33.75565 -32.85667 -31.73840 -31.04683 -29.67734 -27.11277 -26.95618 -26.31317 -24.75084 -23.79678 -22.32452 -21.35408 -20.75183 -19.97907 -19.44406 -18.45939 -17.45289 -17.00025 -16.34104 -16.16675 -15.70977 -15.52381 -15.43430 -14.99627 -14.84803 -14.56073 -14.26066 -13.90573 -13.86856 -13.66656 -13.28186 -13.23904 -12.96659 -12.91910 -12.71143 -12.67051 -12.45246 -12.34850 -12.23571 -12.08143 -12.04074 -11.88352 -11.78294 -11.60980 -11.23921 -11.10409 -10.98513 -10.89119 -10.64041 -10.02013 -9.89229 -9.62214 -9.25333 -8.92249 -8.75476 -8.65510 -8.29021 -8.22126 -6.35436 -3.87137 1.15806 1.26787 2.49578 2.96543 2.97758 3.03072 3.11472 3.63615 3.67519 3.95285 4.06071 4.30126 4.46570 4.56053 4.68372 4.72108 4.72708 4.82160 4.91407 4.98526 5.03909 5.06341 5.15844 5.17527 5.32539 5.34074 5.41813 5.45621 5.49967 5.51176 5.56750 5.62459 5.62721 5.69356 5.77582 5.85933 5.86574 5.88293 5.94136 5.96396 6.13979 6.27730 6.31640 6.37547 6.46939 6.85051 6.98276 7.26192 7.43518 7.53183 8.05156 8.09533 8.54609 8.90266 9.37446 9.76971 10.77525 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014073 B = 0.002126 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.141350 B =13165.655230 C =14063.563169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.080 4.080 3 C -0.124 4.124 4 C -0.117 4.117 5 C -0.127 4.127 6 C -0.083 4.083 7 C -0.063 4.063 8 C -0.078 4.078 9 H 0.108 0.892 10 C -0.145 4.145 11 C 0.522 3.478 12 O -0.530 6.530 13 N -0.732 5.732 14 C 0.119 3.881 15 C 0.072 3.928 16 H 0.049 0.951 17 C -0.138 4.138 18 N -0.664 5.664 19 C 0.046 3.954 20 C 0.448 3.552 21 O -0.564 6.564 22 N -0.589 5.589 23 C -0.306 4.306 24 H 0.120 0.880 25 C 0.041 3.959 26 N -0.880 5.880 27 Si 0.880 3.120 28 H -0.270 1.270 29 H -0.277 1.277 30 H -0.270 1.270 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.399 0.601 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.061 0.939 46 H 0.057 0.943 47 H 0.349 0.651 48 H 0.045 0.955 49 H 0.089 0.911 50 H 0.370 0.630 51 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.954 23.441 -10.143 25.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.080 4.080 3 C -0.142 4.142 4 C -0.135 4.135 5 C -0.145 4.145 6 C -0.101 4.101 7 C -0.064 4.064 8 C -0.099 4.099 9 H 0.126 0.874 10 C -0.202 4.202 11 C 0.307 3.693 12 O -0.406 6.406 13 N -0.385 5.385 14 C -0.005 4.005 15 C -0.039 4.039 16 H 0.066 0.934 17 C -0.197 4.197 18 N -0.299 5.299 19 C -0.087 4.087 20 C 0.233 3.767 21 O -0.446 6.446 22 N -0.229 5.229 23 C -0.434 4.434 24 H 0.137 0.863 25 C -0.162 4.162 26 N -0.520 5.520 27 Si 0.706 3.294 28 H -0.196 1.196 29 H -0.202 1.202 30 H -0.196 1.196 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.234 0.766 42 H 0.091 0.909 43 H 0.097 0.903 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.170 0.830 48 H 0.062 0.938 49 H 0.107 0.893 50 H 0.203 0.797 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.619 23.295 -10.588 25.595 hybrid contribution -2.336 -0.120 0.150 2.344 sum -1.717 23.174 -10.438 25.475 Atomic orbital electron populations 1.20872 0.91485 1.02807 1.02407 1.19705 0.95816 0.92606 0.99837 1.20938 0.94289 0.97126 1.01878 1.21103 0.94295 0.97963 1.00187 1.21093 0.99847 0.92446 1.01093 1.20919 0.93471 0.98190 0.97529 1.19108 0.93584 0.92571 1.01128 1.20409 1.02067 0.93429 0.94001 0.87410 1.21840 1.02643 0.99270 0.96453 1.20446 0.79612 0.80787 0.88411 1.90721 1.36706 1.66866 1.46267 1.46053 1.51073 1.20611 1.20758 1.21597 1.01530 0.91287 0.86085 1.21816 0.97444 0.91636 0.92966 0.93354 1.21738 1.03094 0.99836 0.95000 1.60102 1.40909 1.21523 1.07361 1.21795 0.92442 0.96301 0.98114 1.19684 0.86345 0.83907 0.86722 1.90576 1.22773 1.68199 1.63003 1.42206 1.17225 1.35927 1.27500 1.19426 1.05636 1.15896 1.02472 0.86260 1.25049 0.98365 0.96504 0.96250 1.69618 1.37197 1.24367 1.20779 0.86671 0.83997 0.78900 0.79786 1.19579 1.20172 1.19567 0.91163 0.91432 0.91167 0.86240 0.86282 0.86174 0.86219 0.91490 0.90998 0.91259 0.76644 0.90854 0.90282 0.91415 0.92033 0.92447 0.83000 0.93750 0.89258 0.79708 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 9.28 36.00 0.33 -0.55 16 2 C -0.08 -0.79 5.88 -104.62 -0.62 -1.40 16 3 C -0.12 -1.15 9.68 -39.59 -0.38 -1.53 16 4 C -0.12 -1.09 10.05 -39.58 -0.40 -1.48 16 5 C -0.13 -1.29 10.05 -39.58 -0.40 -1.68 16 6 C -0.08 -0.94 8.21 -39.59 -0.33 -1.27 16 7 C -0.06 -0.69 4.32 -104.62 -0.45 -1.14 16 8 C -0.08 -0.76 2.71 -92.92 -0.25 -1.01 16 9 H 0.11 0.84 5.54 -51.93 -0.29 0.56 16 10 C -0.14 -1.33 8.84 37.16 0.33 -1.01 16 11 C 0.52 6.20 7.05 -10.99 -0.08 6.13 16 12 O -0.53 -8.16 15.38 5.55 0.09 -8.08 16 13 N -0.73 -7.59 4.88 -60.29 -0.29 -7.89 16 14 C 0.12 1.26 5.31 -4.04 -0.02 1.24 16 15 C 0.07 0.76 2.81 -67.71 -0.19 0.57 16 16 H 0.05 0.46 7.80 -51.93 -0.40 0.06 16 17 C -0.14 -1.37 9.42 37.16 0.35 -1.02 16 18 N -0.66 -9.39 5.93 -108.00 -0.64 -10.03 16 19 C 0.05 0.70 5.96 -4.98 -0.03 0.67 16 20 C 0.45 9.68 7.82 -10.98 -0.09 9.60 16 21 O -0.56 -14.57 15.78 5.54 0.09 -14.48 16 22 N -0.59 -13.51 5.09 -10.96 -0.06 -13.56 16 23 C -0.31 -8.43 10.16 -14.93 -0.15 -8.58 16 24 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 25 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 26 N -0.88 -25.27 13.96 55.50 0.77 -24.49 16 27 Si 0.88 18.86 27.74 -169.99 -4.71 14.15 16 28 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 29 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 30 H -0.27 -5.22 6.52 56.52 0.37 -4.85 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.41 8.05 -51.93 -0.42 -0.01 16 33 H 0.07 0.46 6.33 -51.93 -0.33 0.13 16 34 H 0.12 0.85 8.06 -52.48 -0.42 0.42 16 35 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.12 1.36 7.27 -52.48 -0.38 0.98 16 38 H 0.07 0.67 7.11 -51.93 -0.37 0.30 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.62 7.56 -51.93 -0.39 0.23 16 41 H 0.40 3.63 6.79 -40.82 -0.28 3.35 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.06 0.63 7.45 -51.93 -0.39 0.24 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.35 5.07 6.41 -39.29 -0.25 4.82 16 48 H 0.04 0.57 8.05 -51.93 -0.42 0.15 16 49 H 0.09 1.23 7.44 -51.93 -0.39 0.85 16 50 H 0.37 7.41 5.76 -40.82 -0.24 7.18 16 51 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 412.82 15.07 6.22 6.22 Total: -1.00 -34.44 412.82 -8.90 -43.34 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: -7.90 Total: 16.29 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -2.46 Total: -1.46 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -0.22 Total: -55.98 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: 0.17 Total: -22.56 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -4.71 Total: 14.15 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.44 -8.90 -43.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714308497.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.480 kcal (2) G-P(sol) polarization free energy of solvation -34.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds