Wall clock time and date at job start Wed Apr 1 2020 04:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38253 * 120.00219 * 2 1 4 4 C 1.38211 * 120.00190 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99785 * 0.02562 * 4 3 2 6 6 C 1.38209 * 120.00051 * 0.02562 * 5 4 3 7 7 C 1.38219 * 120.00048 * 179.72701 * 2 1 3 8 8 C 1.50707 * 119.99720 * 359.97438 * 7 2 1 9 9 H 1.08996 * 109.47404 * 354.44621 * 8 7 2 10 10 C 1.53001 * 109.47081 * 234.44719 * 8 7 2 11 11 C 1.50702 * 109.47122 * 114.44905 * 8 7 2 12 12 O 1.21284 * 119.99937 * 359.97438 * 11 8 7 13 13 N 1.34768 * 120.00069 * 180.02562 * 11 8 7 14 14 C 1.46504 * 120.00300 * 180.02562 * 13 11 8 15 15 C 1.53003 * 109.47268 * 179.97438 * 14 13 11 16 16 H 1.08996 * 109.46922 * 65.00205 * 15 14 13 17 17 C 1.53004 * 109.46723 * 184.99864 * 15 14 13 18 18 N 1.46897 * 109.46976 * 305.00099 * 15 14 13 19 19 C 1.46897 * 110.99802 * 155.00194 * 18 15 14 20 20 C 1.50701 * 109.47099 * 179.97438 * 19 18 15 21 21 O 1.21295 * 119.99788 * 0.02562 * 20 19 18 22 22 N 1.34776 * 120.00303 * 180.02562 * 20 19 18 23 23 C 1.37095 * 120.00078 * 180.02562 * 22 20 19 24 24 H 1.08000 * 120.00277 * 359.97438 * 23 22 20 25 25 C 1.38953 * 119.99974 * 179.97438 * 23 22 20 26 26 N 1.31404 * 120.00237 * 179.97438 * 25 23 22 27 27 Si 1.86807 * 119.99672 * 359.97438 * 25 23 22 28 28 H 1.48503 * 109.46831 * 90.00468 * 27 25 23 29 29 H 1.48500 * 109.46706 * 209.99694 * 27 25 23 30 30 H 1.48491 * 109.47130 * 330.00082 * 27 25 23 31 31 H 1.08996 * 109.47701 * 96.01173 * 1 2 3 32 32 H 1.09002 * 109.47041 * 336.00916 * 1 2 3 33 33 H 1.09000 * 109.47175 * 216.01483 * 1 2 3 34 34 H 1.08003 * 119.99725 * 0.02562 * 3 2 1 35 35 H 1.07996 * 119.99725 * 180.02562 * 4 3 2 36 36 H 1.07999 * 119.99684 * 180.02562 * 5 4 3 37 37 H 1.08004 * 119.99962 * 180.02562 * 6 5 4 38 38 H 1.08996 * 109.46921 * 300.00197 * 10 8 7 39 39 H 1.09000 * 109.46893 * 59.99996 * 10 8 7 40 40 H 1.08993 * 109.47064 * 180.02562 * 10 8 7 41 41 H 0.97003 * 120.00078 * 359.97438 * 13 11 8 42 42 H 1.09003 * 109.46645 * 299.99652 * 14 13 11 43 43 H 1.09000 * 109.46769 * 59.99653 * 14 13 11 44 44 H 1.08996 * 109.47143 * 60.00476 * 17 15 14 45 45 H 1.09001 * 109.46568 * 179.97438 * 17 15 14 46 46 H 1.08992 * 109.46809 * 299.99869 * 17 15 14 47 47 H 1.00897 * 111.00681 * 31.04460 * 18 15 14 48 48 H 1.08995 * 109.47406 * 299.99541 * 19 18 15 49 49 H 1.08998 * 109.47334 * 60.00094 * 19 18 15 50 50 H 0.97001 * 119.99447 * 359.97438 * 22 20 19 51 51 H 0.97006 * 120.00323 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 -0.0001 0.0005 6 6 3.5806 -1.1970 -0.0005 7 6 2.1981 -1.1970 0.0057 8 6 1.4445 -2.5021 0.0125 9 1 0.3771 -2.3049 0.1114 10 6 1.9163 -3.3573 1.1902 11 6 1.7021 -3.2376 -1.2774 12 8 2.4259 -2.7499 -2.1195 13 7 1.1273 -4.4369 -1.4956 14 6 1.3781 -5.1522 -2.7493 15 6 0.6129 -6.4772 -2.7424 16 1 -0.4586 -6.2778 -2.7336 17 6 0.9721 -7.2799 -3.9944 18 7 0.9777 -7.2470 -1.5457 19 6 -0.0922 -8.1831 -1.1756 20 6 0.3172 -8.9537 0.0530 21 8 1.3942 -8.7434 0.5698 22 7 -0.5132 -9.8766 0.5776 23 6 -0.1409 -10.5772 1.6956 24 1 0.8181 -10.3900 2.1558 25 6 -0.9973 -11.5283 2.2368 26 7 -0.6403 -12.2002 3.3081 27 14 -2.6563 -11.8516 1.4412 28 1 -2.5156 -12.9208 0.4203 29 1 -3.6271 -12.2827 2.4789 30 1 -3.1446 -10.6085 0.7922 31 1 -0.3634 -0.1076 -1.0219 32 1 -0.3633 0.9389 0.4178 33 1 -0.3633 -0.8312 0.6043 34 1 1.6582 2.1326 0.0004 35 1 4.1203 2.1326 0.0010 36 1 5.3516 -0.0001 0.0014 37 1 4.1206 -2.1324 -0.0001 38 1 2.9837 -3.5545 1.0913 39 1 1.7300 -2.8253 2.1231 40 1 1.3716 -4.3014 1.1948 41 1 0.5481 -4.8269 -0.8222 42 1 1.0427 -4.5429 -3.5885 43 1 2.4455 -5.3500 -2.8474 44 1 2.0436 -7.4793 -4.0032 45 1 0.4273 -8.2240 -3.9893 46 1 0.7014 -6.7086 -4.8823 47 1 1.2041 -6.6344 -0.7766 48 1 -1.0062 -7.6267 -0.9680 49 1 -0.2682 -8.8771 -1.9974 50 1 -1.3746 -10.0444 0.1645 51 1 -1.2380 -12.8644 3.6857 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714308497.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:54 Heat of formation + Delta-G solvation = -74.892896 kcal Electronic energy + Delta-G solvation = -30186.877338 eV Core-core repulsion = 26084.782958 eV Total energy + Delta-G solvation = -4102.094380 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.52002 -40.39503 -39.87315 -38.19655 -36.00772 -35.41493 -34.84470 -33.73367 -33.54170 -32.09698 -30.43002 -28.27997 -27.73352 -27.41386 -25.70167 -25.29987 -23.11629 -22.09822 -21.65944 -21.30043 -20.80120 -20.26699 -18.44918 -17.86154 -17.56992 -17.07698 -16.97344 -16.70905 -16.46158 -16.38613 -15.79215 -15.54525 -15.49838 -15.08437 -14.87463 -14.62119 -14.42002 -14.39927 -14.17000 -13.97218 -13.77668 -13.64217 -13.38482 -13.31744 -13.27825 -13.03788 -12.95832 -12.81211 -12.75669 -12.58605 -12.50135 -12.39566 -11.96441 -11.89340 -11.81593 -11.60572 -11.49863 -10.84280 -10.42090 -10.23470 -10.17019 -9.68066 -9.48288 -9.36980 -8.39763 -6.00693 0.41420 0.51291 1.31160 1.37420 1.46030 1.56879 1.97098 2.12304 2.24475 2.69718 2.88863 3.16755 3.35831 3.53271 3.67900 3.75635 3.96758 4.03985 4.11222 4.13037 4.17645 4.20612 4.26398 4.35751 4.43493 4.45560 4.57414 4.60596 4.63010 4.70687 4.77401 4.82039 4.82784 4.90652 4.93347 4.97966 5.05586 5.14151 5.20290 5.30055 5.31560 5.46444 5.54254 5.59233 5.63136 5.72504 5.91285 6.04264 6.13715 6.33934 6.41036 6.60988 6.89950 7.15647 7.41521 7.98252 8.77780 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014073 B = 0.002126 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.141350 B =13165.655230 C =14063.563169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.090 4.090 3 C -0.131 4.131 4 C -0.122 4.122 5 C -0.142 4.142 6 C -0.106 4.106 7 C -0.080 4.080 8 C -0.070 4.070 9 H 0.132 0.868 10 C -0.142 4.142 11 C 0.520 3.480 12 O -0.570 6.570 13 N -0.723 5.723 14 C 0.122 3.878 15 C 0.080 3.920 16 H 0.076 0.924 17 C -0.138 4.138 18 N -0.685 5.685 19 C 0.060 3.940 20 C 0.448 3.552 21 O -0.614 6.614 22 N -0.590 5.590 23 C -0.327 4.327 24 H 0.054 0.946 25 C -0.017 4.017 26 N -0.935 5.935 27 Si 0.965 3.035 28 H -0.259 1.259 29 H -0.277 1.277 30 H -0.227 1.227 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.131 0.869 37 H 0.106 0.894 38 H 0.050 0.950 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.407 0.593 42 H 0.084 0.916 43 H 0.056 0.944 44 H 0.049 0.951 45 H 0.063 0.937 46 H 0.080 0.920 47 H 0.343 0.657 48 H 0.085 0.915 49 H 0.115 0.885 50 H 0.390 0.610 51 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.700 24.945 -12.299 28.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.090 4.090 3 C -0.149 4.149 4 C -0.140 4.140 5 C -0.160 4.160 6 C -0.125 4.125 7 C -0.081 4.081 8 C -0.091 4.091 9 H 0.149 0.851 10 C -0.199 4.199 11 C 0.307 3.693 12 O -0.448 6.448 13 N -0.376 5.376 14 C -0.001 4.001 15 C -0.029 4.029 16 H 0.093 0.907 17 C -0.196 4.196 18 N -0.321 5.321 19 C -0.072 4.072 20 C 0.236 3.764 21 O -0.498 6.498 22 N -0.232 5.232 23 C -0.456 4.456 24 H 0.073 0.927 25 C -0.216 4.216 26 N -0.576 5.576 27 Si 0.785 3.215 28 H -0.184 1.184 29 H -0.202 1.202 30 H -0.150 1.150 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.161 0.839 35 H 0.160 0.840 36 H 0.149 0.851 37 H 0.124 0.876 38 H 0.069 0.931 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.243 0.757 42 H 0.102 0.898 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.082 0.918 46 H 0.099 0.901 47 H 0.164 0.836 48 H 0.102 0.898 49 H 0.132 0.868 50 H 0.226 0.774 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.145 24.804 -12.765 28.073 hybrid contribution -0.989 -0.530 0.845 1.405 sum -4.133 24.274 -11.920 27.357 Atomic orbital electron populations 1.20922 0.89631 1.04132 1.02785 1.20073 0.97337 0.92376 0.99236 1.21317 0.94511 0.97997 1.01043 1.21430 0.94747 0.98452 0.99367 1.21331 1.00660 0.92609 1.01355 1.21000 0.94225 0.98213 0.99015 1.19302 0.93514 0.93546 1.01713 1.20407 1.03260 0.92774 0.92678 0.85084 1.21818 1.01676 0.99511 0.96921 1.20840 0.78857 0.80970 0.88651 1.90700 1.38471 1.67951 1.47728 1.46001 1.50622 1.20061 1.20901 1.21551 1.00377 0.91711 0.86510 1.21851 0.98738 0.90809 0.91505 0.90668 1.21760 1.02064 1.00240 0.95584 1.60093 1.41407 1.22289 1.08290 1.21729 0.93836 0.96561 0.95046 1.20999 0.85071 0.82783 0.87590 1.90561 1.25081 1.69344 1.64836 1.42021 1.18433 1.36154 1.26558 1.18985 1.04014 1.17969 1.04640 0.92745 1.26138 1.03607 0.95278 0.96527 1.69807 1.39512 1.25317 1.22944 0.85364 0.76670 0.80626 0.78836 1.18393 1.20218 1.15033 0.91028 0.89824 0.90273 0.83872 0.83980 0.85124 0.87634 0.93062 0.89942 0.91001 0.75658 0.89829 0.92526 0.93140 0.91780 0.90149 0.83606 0.89770 0.86758 0.77443 0.91207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.47 9.28 71.23 0.66 -0.81 16 2 C -0.09 -1.67 5.88 -19.87 -0.12 -1.79 16 3 C -0.13 -2.22 9.68 22.27 0.22 -2.00 16 4 C -0.12 -2.14 10.05 22.27 0.22 -1.92 16 5 C -0.14 -2.93 10.05 22.27 0.22 -2.71 16 6 C -0.11 -2.54 8.21 22.27 0.18 -2.36 16 7 C -0.08 -1.74 4.32 -19.86 -0.09 -1.83 16 8 C -0.07 -1.33 2.71 -12.28 -0.03 -1.36 16 9 H 0.13 1.81 5.54 -2.39 -0.01 1.79 16 10 C -0.14 -2.64 8.84 71.98 0.64 -2.00 16 11 C 0.52 12.27 7.05 87.66 0.62 12.89 16 12 O -0.57 -17.93 15.38 -3.04 -0.05 -17.98 16 13 N -0.72 -14.20 4.88 -463.05 -2.26 -16.46 16 14 C 0.12 2.44 5.31 86.38 0.46 2.90 16 15 C 0.08 1.46 2.81 44.92 0.13 1.59 16 16 H 0.08 1.05 7.80 -2.39 -0.02 1.03 16 17 C -0.14 -2.36 9.42 71.98 0.68 -1.68 16 18 N -0.69 -18.03 5.93 -495.59 -2.94 -20.97 16 19 C 0.06 1.63 5.96 85.56 0.51 2.14 16 20 C 0.45 19.03 7.82 87.66 0.69 19.71 16 21 O -0.61 -32.74 15.78 -3.08 -0.05 -32.79 16 22 N -0.59 -26.47 5.09 -306.98 -1.56 -28.03 16 23 C -0.33 -18.65 10.16 84.04 0.85 -17.79 16 24 H 0.05 3.73 7.39 -2.91 -0.02 3.71 16 25 C -0.02 -0.92 5.50 84.93 0.47 -0.46 16 26 N -0.94 -55.61 13.96 21.66 0.30 -55.31 16 27 Si 0.97 37.46 27.74 68.60 1.90 39.36 16 28 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 29 H -0.28 -10.76 7.11 99.48 0.71 -10.05 16 30 H -0.23 -7.19 6.52 99.48 0.65 -6.54 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.08 0.76 8.05 -2.39 -0.02 0.74 16 33 H 0.08 0.82 6.33 -2.39 -0.02 0.81 16 34 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 35 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 36 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 37 H 0.11 2.68 7.27 -2.91 -0.02 2.66 16 38 H 0.05 1.10 7.11 -2.39 -0.02 1.08 16 39 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.07 1.27 7.56 -2.39 -0.02 1.25 16 41 H 0.41 6.67 6.79 -92.71 -0.63 6.04 16 42 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.05 1.03 8.14 -2.39 -0.02 1.02 16 45 H 0.06 1.07 7.45 -2.39 -0.02 1.06 16 46 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.34 9.62 6.41 -89.70 -0.58 9.04 16 48 H 0.08 1.69 8.05 -2.39 -0.02 1.67 16 49 H 0.11 2.61 7.44 -2.39 -0.02 2.59 16 50 H 0.39 14.25 5.76 -92.71 -0.53 13.72 16 51 H 0.28 15.14 8.31 -92.70 -0.77 14.37 16 Total: -1.00 -81.81 412.82 0.82 -80.98 By element: Atomic # 1 Polarization: 49.52 SS G_CDS: -0.83 Total: 48.69 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: 6.31 Total: 2.51 kcal Atomic # 7 Polarization: -114.32 SS G_CDS: -6.46 Total: -120.78 kcal Atomic # 8 Polarization: -50.68 SS G_CDS: -0.10 Total: -50.77 kcal Atomic # 14 Polarization: 37.46 SS G_CDS: 1.90 Total: 39.36 kcal Total: -81.81 0.82 -80.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714308497.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.092 kcal (2) G-P(sol) polarization free energy of solvation -81.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds