Wall clock time and date at job start Wed Apr 1 2020 04:27:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.38254 * 119.99724 * 2 1
4 4 C 1.38223 * 119.99622 * 179.78779 * 3 2 1
5 5 C 1.38250 * 119.99675 * 0.46362 * 4 3 2
6 6 C 1.38213 * 120.00437 * 359.76551 * 5 4 3
7 7 C 1.38215 * 119.99804 * 180.27304 * 2 1 3
8 8 C 1.50701 * 119.99943 * 359.97438 * 7 2 1
9 9 H 1.08992 * 109.47453 * 5.04235 * 8 7 2
10 10 C 1.53009 * 109.46736 * 125.03976 * 8 7 2
11 11 C 1.50703 * 109.47117 * 245.03509 * 8 7 2
12 12 O 1.21275 * 119.99805 * 0.02562 * 11 8 7
13 13 N 1.34772 * 119.99680 * 180.02562 * 11 8 7
14 14 C 1.46504 * 119.99541 * 180.02562 * 13 11 8
15 15 C 1.53000 * 109.47008 * 180.02562 * 14 13 11
16 16 H 1.09006 * 109.46837 * 294.99630 * 15 14 13
17 17 C 1.52999 * 109.47137 * 174.99811 * 15 14 13
18 18 N 1.46903 * 109.47235 * 54.99708 * 15 14 13
19 19 C 1.46904 * 110.99597 * 205.00202 * 18 15 14
20 20 C 1.50700 * 109.46583 * 180.02562 * 19 18 15
21 21 O 1.21290 * 120.00160 * 359.97438 * 20 19 18
22 22 N 1.34783 * 120.00063 * 179.97438 * 20 19 18
23 23 C 1.37092 * 119.99974 * 180.02562 * 22 20 19
24 24 H 1.08002 * 120.00171 * 0.02562 * 23 22 20
25 25 C 1.38952 * 119.99741 * 179.97438 * 23 22 20
26 26 N 1.31409 * 120.00112 * 0.02562 * 25 23 22
27 27 Si 1.86804 * 120.00087 * 179.97438 * 25 23 22
28 28 H 1.48501 * 109.47009 * 60.00259 * 27 25 23
29 29 H 1.48493 * 109.47360 * 180.02562 * 27 25 23
30 30 H 1.48498 * 109.47162 * 300.00468 * 27 25 23
31 31 H 1.09000 * 109.47072 * 263.80371 * 1 2 3
32 32 H 1.09002 * 109.47273 * 143.80971 * 1 2 3
33 33 H 1.08997 * 109.47228 * 23.81030 * 1 2 3
34 34 H 1.07995 * 120.00460 * 359.97438 * 3 2 1
35 35 H 1.08000 * 119.99739 * 180.24730 * 4 3 2
36 36 H 1.08009 * 119.99780 * 179.78706 * 5 4 3
37 37 H 1.08006 * 120.00325 * 180.02562 * 6 5 4
38 38 H 1.08995 * 109.46664 * 180.02562 * 10 8 7
39 39 H 1.09001 * 109.46856 * 299.99530 * 10 8 7
40 40 H 1.08992 * 109.46938 * 59.99943 * 10 8 7
41 41 H 0.97000 * 120.00575 * 0.02562 * 13 11 8
42 42 H 1.09004 * 109.47109 * 300.00030 * 14 13 11
43 43 H 1.08995 * 109.47247 * 60.00396 * 14 13 11
44 44 H 1.09005 * 109.47037 * 60.00291 * 17 15 14
45 45 H 1.09004 * 109.46834 * 179.97438 * 17 15 14
46 46 H 1.08994 * 109.47371 * 299.99956 * 17 15 14
47 47 H 1.00891 * 110.99950 * 328.95377 * 18 15 14
48 48 H 1.09000 * 109.47483 * 299.99692 * 19 18 15
49 49 H 1.08998 * 109.47614 * 60.00458 * 19 18 15
50 50 H 0.96997 * 119.99868 * 359.97438 * 22 20 19
51 51 H 0.96999 * 120.00141 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1982 1.1973 0.0000
4 6 3.5805 1.1973 0.0044
5 6 4.2716 0.0000 -0.0008
6 6 3.5806 -1.1970 -0.0056
7 6 2.1981 -1.1970 -0.0057
8 6 1.4445 -2.5021 -0.0113
9 1 0.3763 -2.3045 -0.1003
10 6 1.9063 -3.3524 -1.1965
11 6 1.7131 -3.2428 1.2733
12 8 2.4441 -2.7584 2.1110
13 7 1.1410 -4.4435 1.4910
14 6 1.4018 -5.1633 2.7401
15 6 0.6378 -6.4889 2.7338
16 1 -0.4340 -6.2905 2.7337
17 6 1.0069 -7.2962 3.9800
18 7 0.9944 -7.2539 1.5314
19 6 -0.0774 -8.1895 1.1657
20 6 0.3237 -8.9550 -0.0688
21 8 1.3967 -8.7418 -0.5927
22 7 -0.5098 -9.8767 -0.5908
23 6 -0.1446 -10.5734 -1.7136
24 1 0.8111 -10.3842 -2.1796
25 6 -1.0037 -11.5239 -2.2514
26 7 -2.1664 -11.7546 -1.6841
27 14 -0.5066 -12.4729 -3.7817
28 1 0.7418 -13.2301 -3.5108
29 1 -1.5897 -13.4191 -4.1511
30 1 -0.2766 -11.5234 -4.9001
31 1 -0.3633 -0.1109 1.0217
32 1 -0.3634 -0.8294 -0.6068
33 1 -0.3633 0.9402 -0.4149
34 1 1.6583 2.1326 -0.0004
35 1 4.1204 2.1326 0.0085
36 1 5.3517 0.0000 -0.0008
37 1 4.1206 -2.1323 -0.0093
38 1 1.3610 -4.2961 -1.2009
39 1 1.7120 -2.8167 -2.1257
40 1 2.9745 -3.5500 -1.1075
41 1 0.5567 -4.8311 0.8208
42 1 2.4701 -5.3604 2.8297
43 1 1.0720 -4.5576 3.5842
44 1 0.7422 -6.7285 4.8722
45 1 0.4623 -8.2404 3.9757
46 1 2.0786 -7.4945 3.9802
47 1 1.2146 -6.6381 0.7632
48 1 -0.2467 -8.8869 1.9862
49 1 -0.9934 -7.6331 0.9670
50 1 -1.3677 -10.0475 -0.1717
51 1 -2.7663 -12.4178 -2.0598
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001714308499.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:27:00
Heat of formation + Delta-G solvation = -57.133753 kcal
Electronic energy + Delta-G solvation = -30132.055814 eV
Core-core repulsion = 26030.731528 eV
Total energy + Delta-G solvation = -4101.324285 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-40.64165 -39.18335 -38.39884 -36.98011 -34.54894 -34.12905 -33.68934 -32.83905
-31.35176 -30.87815 -29.65677 -27.08744 -26.84741 -26.18924 -24.73436 -23.96099
-22.30913 -21.33350 -20.68950 -19.94290 -19.31834 -17.97540 -17.43250 -16.97976
-16.29661 -16.12786 -15.67981 -15.51801 -15.29590 -14.94817 -14.62024 -14.48473
-14.20787 -13.93727 -13.84042 -13.67922 -13.43343 -13.26338 -12.93280 -12.82740
-12.64796 -12.56983 -12.40670 -12.32991 -12.03075 -11.93229 -11.80387 -11.74985
-11.67773 -11.44731 -11.10583 -11.07386 -10.92333 -10.85096 -10.47354 -10.25092
-9.86218 -9.54083 -9.21153 -8.91026 -8.74221 -8.51916 -8.17090 -8.00622
-6.45628 -3.86613 1.17093 1.27857 2.52660 3.00403 3.17220 3.23463
3.27637 3.65213 3.85193 4.00981 4.24442 4.31900 4.49318 4.61872
4.71160 4.74151 4.84647 4.93296 4.94979 4.99876 5.07677 5.15424
5.21208 5.26414 5.33980 5.35577 5.43422 5.50595 5.52758 5.58325
5.64262 5.65865 5.74193 5.74511 5.87679 5.92060 5.95362 5.96008
5.97587 6.15891 6.23136 6.32073 6.34773 6.38642 6.48304 6.86216
7.11256 7.30283 7.51234 7.53578 8.01632 8.08503 8.56615 9.13640
9.49542 10.00731 10.71855
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.013018 B = 0.002107 C = 0.001932
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2150.305506 B =13282.703191 C =14487.140590
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 C -0.080 4.080
3 C -0.124 4.124
4 C -0.118 4.118
5 C -0.127 4.127
6 C -0.083 4.083
7 C -0.063 4.063
8 C -0.078 4.078
9 H 0.108 0.892
10 C -0.144 4.144
11 C 0.521 3.479
12 O -0.531 6.531
13 N -0.731 5.731
14 C 0.119 3.881
15 C 0.071 3.929
16 H 0.048 0.952
17 C -0.138 4.138
18 N -0.664 5.664
19 C 0.049 3.951
20 C 0.439 3.561
21 O -0.583 6.583
22 N -0.562 5.562
23 C -0.300 4.300
24 H 0.103 0.897
25 C 0.023 3.977
26 N -0.901 5.901
27 Si 0.931 3.069
28 H -0.273 1.273
29 H -0.284 1.284
30 H -0.274 1.274
31 H 0.070 0.930
32 H 0.070 0.930
33 H 0.067 0.933
34 H 0.120 0.880
35 H 0.119 0.881
36 H 0.120 0.880
37 H 0.120 0.880
38 H 0.069 0.931
39 H 0.071 0.929
40 H 0.066 0.934
41 H 0.399 0.601
42 H 0.078 0.922
43 H 0.073 0.927
44 H 0.056 0.944
45 H 0.061 0.939
46 H 0.066 0.934
47 H 0.347 0.653
48 H 0.088 0.912
49 H 0.043 0.957
50 H 0.392 0.608
51 H 0.272 0.728
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.360 22.115 6.259 23.104
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.176 4.176
2 C -0.080 4.080
3 C -0.142 4.142
4 C -0.136 4.136
5 C -0.145 4.145
6 C -0.101 4.101
7 C -0.064 4.064
8 C -0.099 4.099
9 H 0.126 0.874
10 C -0.202 4.202
11 C 0.307 3.693
12 O -0.406 6.406
13 N -0.384 5.384
14 C -0.005 4.005
15 C -0.039 4.039
16 H 0.066 0.934
17 C -0.196 4.196
18 N -0.299 5.299
19 C -0.084 4.084
20 C 0.224 3.776
21 O -0.467 6.467
22 N -0.199 5.199
23 C -0.430 4.430
24 H 0.120 0.880
25 C -0.179 4.179
26 N -0.542 5.542
27 Si 0.758 3.242
28 H -0.199 1.199
29 H -0.210 1.210
30 H -0.199 1.199
31 H 0.089 0.911
32 H 0.088 0.912
33 H 0.086 0.914
34 H 0.138 0.862
35 H 0.137 0.863
36 H 0.138 0.862
37 H 0.138 0.862
38 H 0.088 0.912
39 H 0.090 0.910
40 H 0.085 0.915
41 H 0.234 0.766
42 H 0.097 0.903
43 H 0.091 0.909
44 H 0.075 0.925
45 H 0.080 0.920
46 H 0.085 0.915
47 H 0.168 0.832
48 H 0.106 0.894
49 H 0.061 0.939
50 H 0.225 0.775
51 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges 3.817 21.991 6.809 23.335
hybrid contribution -1.338 -0.336 -1.098 1.763
sum 2.479 21.655 5.711 22.532
Atomic orbital electron populations
1.20874 0.91466 1.02808 1.02436 1.19710 0.95831 0.92600 0.99824
1.20940 0.94283 0.97125 1.01885 1.21101 0.94297 0.97952 1.00219
1.21089 0.99830 0.92452 1.01126 1.20920 0.93476 0.98172 0.97542
1.19110 0.93582 0.92585 1.01077 1.20409 1.02066 0.93391 0.94062
0.87397 1.21838 1.02647 0.99340 0.96354 1.20434 0.79728 0.80829
0.88284 1.90716 1.36447 1.67124 1.46350 1.46056 1.50722 1.20417
1.21224 1.21599 1.01445 0.91291 0.86148 1.21813 0.97465 0.91600
0.93013 0.93367 1.21736 1.02975 0.99885 0.95039 1.60120 1.41351
1.21455 1.06958 1.21760 0.92179 0.96158 0.98255 1.19787 0.86437
0.84444 0.86932 1.90530 1.23576 1.69105 1.63467 1.41857 1.18079
1.33915 1.26016 1.19648 1.04017 1.16181 1.03134 0.87963 1.25266
0.95280 0.97794 0.99562 1.69599 1.08883 1.34672 1.41088 0.85916
0.78046 0.79144 0.81117 1.19858 1.20972 1.19904 0.91140 0.91155
0.91435 0.86241 0.86295 0.86195 0.86235 0.91241 0.91045 0.91521
0.76607 0.90345 0.90899 0.92511 0.91974 0.91508 0.83178 0.89398
0.93876 0.77470 0.91787
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.90 9.27 36.01 0.33 -0.57 16
2 C -0.08 -0.80 5.88 -104.62 -0.62 -1.41 16
3 C -0.12 -1.17 9.68 -39.58 -0.38 -1.55 16
4 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16
5 C -0.13 -1.30 10.05 -39.59 -0.40 -1.70 16
6 C -0.08 -0.96 8.20 -39.58 -0.32 -1.28 16
7 C -0.06 -0.70 4.32 -104.62 -0.45 -1.15 16
8 C -0.08 -0.78 2.71 -92.92 -0.25 -1.03 16
9 H 0.11 0.88 5.55 -51.93 -0.29 0.59 16
10 C -0.14 -1.35 8.85 37.16 0.33 -1.03 16
11 C 0.52 6.37 7.05 -10.99 -0.08 6.30 16
12 O -0.53 -8.33 15.37 5.56 0.09 -8.24 16
13 N -0.73 -7.93 4.88 -60.29 -0.29 -8.23 16
14 C 0.12 1.33 5.31 -4.04 -0.02 1.31 16
15 C 0.07 0.81 2.81 -67.71 -0.19 0.62 16
16 H 0.05 0.51 7.80 -51.93 -0.40 0.10 16
17 C -0.14 -1.48 9.41 37.16 0.35 -1.13 16
18 N -0.66 -9.94 5.93 -107.99 -0.64 -10.58 16
19 C 0.05 0.81 5.97 -4.97 -0.03 0.78 16
20 C 0.44 9.93 7.82 -10.98 -0.09 9.85 16
21 O -0.58 -15.29 15.78 5.55 0.09 -15.20 16
22 N -0.56 -13.79 5.29 -10.96 -0.06 -13.85 16
23 C -0.30 -8.18 9.68 -14.94 -0.14 -8.33 16
24 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16
25 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16
26 N -0.90 -24.01 13.05 55.50 0.72 -23.29 16
27 Si 0.93 20.70 29.55 -169.99 -5.02 15.67 16
28 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16
29 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16
30 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16
31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
32 H 0.07 0.47 6.35 -51.93 -0.33 0.14 16
33 H 0.07 0.42 8.04 -51.93 -0.42 0.00 16
34 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16
35 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16
36 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16
37 H 0.12 1.38 7.29 -52.48 -0.38 1.00 16
38 H 0.07 0.64 7.56 -51.93 -0.39 0.25 16
39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
40 H 0.07 0.67 7.12 -51.93 -0.37 0.30 16
41 H 0.40 3.85 6.79 -40.82 -0.28 3.58 16
42 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16
43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16
44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
45 H 0.06 0.69 7.45 -51.93 -0.39 0.30 16
46 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
47 H 0.35 5.30 6.41 -39.30 -0.25 5.05 16
48 H 0.09 1.36 7.44 -51.93 -0.39 0.97 16
49 H 0.04 0.62 8.06 -51.93 -0.42 0.20 16
50 H 0.39 9.18 7.90 -40.82 -0.32 8.86 16
51 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16
LS Contribution 415.96 15.07 6.27 6.27
Total: -1.00 -33.08 415.96 -9.25 -42.33
By element:
Atomic # 1 Polarization: 24.37 SS G_CDS: -7.94 Total: 16.43 kcal
Atomic # 6 Polarization: 1.14 SS G_CDS: -2.46 Total: -1.31 kcal
Atomic # 7 Polarization: -55.67 SS G_CDS: -0.27 Total: -55.94 kcal
Atomic # 8 Polarization: -23.62 SS G_CDS: 0.17 Total: -23.44 kcal
Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal
Total LS contribution 6.27 Total: 6.27 kcal
Total: -33.08 -9.25 -42.33 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001714308499.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -14.802 kcal
(2) G-P(sol) polarization free energy of solvation -33.082 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.884 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.332 kcal
(6) G-S(sol) free energy of system = (1) + (5) -57.134 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds