Wall clock time and date at job start Wed Apr 1 2020 04:26:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.38254 * 119.99724 * 2 1
4 4 C 1.38223 * 119.99622 * 179.78779 * 3 2 1
5 5 C 1.38250 * 119.99675 * 0.46362 * 4 3 2
6 6 C 1.38213 * 120.00437 * 359.76551 * 5 4 3
7 7 C 1.38215 * 119.99804 * 180.27304 * 2 1 3
8 8 C 1.50701 * 119.99943 * 359.97438 * 7 2 1
9 9 H 1.08992 * 109.47453 * 5.04235 * 8 7 2
10 10 C 1.53009 * 109.46736 * 125.03976 * 8 7 2
11 11 C 1.50703 * 109.47117 * 245.03509 * 8 7 2
12 12 O 1.21275 * 119.99805 * 0.02562 * 11 8 7
13 13 N 1.34772 * 119.99680 * 180.02562 * 11 8 7
14 14 C 1.46504 * 119.99541 * 180.02562 * 13 11 8
15 15 C 1.53000 * 109.47008 * 180.02562 * 14 13 11
16 16 H 1.09006 * 109.46837 * 294.99630 * 15 14 13
17 17 C 1.52999 * 109.47137 * 174.99811 * 15 14 13
18 18 N 1.46903 * 109.47235 * 54.99708 * 15 14 13
19 19 C 1.46904 * 110.99597 * 205.00202 * 18 15 14
20 20 C 1.50700 * 109.46583 * 180.02562 * 19 18 15
21 21 O 1.21290 * 120.00160 * 359.97438 * 20 19 18
22 22 N 1.34783 * 120.00063 * 179.97438 * 20 19 18
23 23 C 1.37092 * 119.99974 * 180.02562 * 22 20 19
24 24 H 1.08002 * 120.00171 * 0.02562 * 23 22 20
25 25 C 1.38952 * 119.99741 * 179.97438 * 23 22 20
26 26 N 1.31409 * 120.00112 * 0.02562 * 25 23 22
27 27 Si 1.86804 * 120.00087 * 179.97438 * 25 23 22
28 28 H 1.48501 * 109.47009 * 60.00259 * 27 25 23
29 29 H 1.48493 * 109.47360 * 180.02562 * 27 25 23
30 30 H 1.48498 * 109.47162 * 300.00468 * 27 25 23
31 31 H 1.09000 * 109.47072 * 263.80371 * 1 2 3
32 32 H 1.09002 * 109.47273 * 143.80971 * 1 2 3
33 33 H 1.08997 * 109.47228 * 23.81030 * 1 2 3
34 34 H 1.07995 * 120.00460 * 359.97438 * 3 2 1
35 35 H 1.08000 * 119.99739 * 180.24730 * 4 3 2
36 36 H 1.08009 * 119.99780 * 179.78706 * 5 4 3
37 37 H 1.08006 * 120.00325 * 180.02562 * 6 5 4
38 38 H 1.08995 * 109.46664 * 180.02562 * 10 8 7
39 39 H 1.09001 * 109.46856 * 299.99530 * 10 8 7
40 40 H 1.08992 * 109.46938 * 59.99943 * 10 8 7
41 41 H 0.97000 * 120.00575 * 0.02562 * 13 11 8
42 42 H 1.09004 * 109.47109 * 300.00030 * 14 13 11
43 43 H 1.08995 * 109.47247 * 60.00396 * 14 13 11
44 44 H 1.09005 * 109.47037 * 60.00291 * 17 15 14
45 45 H 1.09004 * 109.46834 * 179.97438 * 17 15 14
46 46 H 1.08994 * 109.47371 * 299.99956 * 17 15 14
47 47 H 1.00891 * 110.99950 * 328.95377 * 18 15 14
48 48 H 1.09000 * 109.47483 * 299.99692 * 19 18 15
49 49 H 1.08998 * 109.47614 * 60.00458 * 19 18 15
50 50 H 0.96997 * 119.99868 * 359.97438 * 22 20 19
51 51 H 0.96999 * 120.00141 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1982 1.1973 0.0000
4 6 3.5805 1.1973 0.0044
5 6 4.2716 0.0000 -0.0008
6 6 3.5806 -1.1970 -0.0056
7 6 2.1981 -1.1970 -0.0057
8 6 1.4445 -2.5021 -0.0113
9 1 0.3763 -2.3045 -0.1003
10 6 1.9063 -3.3524 -1.1965
11 6 1.7131 -3.2428 1.2733
12 8 2.4441 -2.7584 2.1110
13 7 1.1410 -4.4435 1.4910
14 6 1.4018 -5.1633 2.7401
15 6 0.6378 -6.4889 2.7338
16 1 -0.4340 -6.2905 2.7337
17 6 1.0069 -7.2962 3.9800
18 7 0.9944 -7.2539 1.5314
19 6 -0.0774 -8.1895 1.1657
20 6 0.3237 -8.9550 -0.0688
21 8 1.3967 -8.7418 -0.5927
22 7 -0.5098 -9.8767 -0.5908
23 6 -0.1446 -10.5734 -1.7136
24 1 0.8111 -10.3842 -2.1796
25 6 -1.0037 -11.5239 -2.2514
26 7 -2.1664 -11.7546 -1.6841
27 14 -0.5066 -12.4729 -3.7817
28 1 0.7418 -13.2301 -3.5108
29 1 -1.5897 -13.4191 -4.1511
30 1 -0.2766 -11.5234 -4.9001
31 1 -0.3633 -0.1109 1.0217
32 1 -0.3634 -0.8294 -0.6068
33 1 -0.3633 0.9402 -0.4149
34 1 1.6583 2.1326 -0.0004
35 1 4.1204 2.1326 0.0085
36 1 5.3517 0.0000 -0.0008
37 1 4.1206 -2.1323 -0.0093
38 1 1.3610 -4.2961 -1.2009
39 1 1.7120 -2.8167 -2.1257
40 1 2.9745 -3.5500 -1.1075
41 1 0.5567 -4.8311 0.8208
42 1 2.4701 -5.3604 2.8297
43 1 1.0720 -4.5576 3.5842
44 1 0.7422 -6.7285 4.8722
45 1 0.4623 -8.2404 3.9757
46 1 2.0786 -7.4945 3.9802
47 1 1.2146 -6.6381 0.7632
48 1 -0.2467 -8.8869 1.9862
49 1 -0.9934 -7.6331 0.9670
50 1 -1.3677 -10.0475 -0.1717
51 1 -2.7663 -12.4178 -2.0598
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001714308499.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:26:59
Heat of formation + Delta-G solvation = -79.531926 kcal
Electronic energy + Delta-G solvation = -30133.027071 eV
Core-core repulsion = 26030.731528 eV
Total energy + Delta-G solvation = -4102.295543 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-41.51833 -40.28598 -39.83830 -38.17350 -35.96702 -35.41024 -34.82909 -33.54049
-33.25881 -32.04966 -30.42516 -28.16091 -27.72987 -27.40490 -25.81811 -25.37700
-23.11791 -22.09411 -21.67240 -21.14816 -20.74087 -19.90394 -18.46513 -17.86219
-17.56489 -17.07913 -16.89459 -16.62080 -16.44865 -16.31778 -15.83671 -15.68826
-15.45080 -15.23708 -14.88428 -14.61119 -14.39965 -14.25210 -13.96833 -13.78503
-13.71277 -13.48139 -13.36086 -13.28431 -13.26223 -13.03456 -12.92441 -12.80011
-12.75477 -12.59562 -12.50456 -12.41342 -12.12124 -11.90065 -11.81423 -11.60390
-11.48840 -10.84133 -10.32867 -10.17142 -10.00078 -9.67612 -9.48034 -9.36963
-8.45449 -5.93710 0.41790 0.51635 1.40367 1.42876 1.53114 1.57013
2.06522 2.12336 2.29693 2.85765 2.90730 3.22188 3.48916 3.53537
3.67611 3.75838 3.97140 4.04268 4.12898 4.17230 4.18472 4.26137
4.27254 4.39331 4.45759 4.46536 4.60603 4.61038 4.63348 4.71125
4.77418 4.81981 4.82200 4.90981 4.92582 4.98072 5.04640 5.14408
5.20607 5.29237 5.31522 5.42160 5.45176 5.59552 5.63458 5.72920
5.88813 6.09750 6.14007 6.36045 6.40888 6.61579 7.14186 7.15340
7.58106 8.13393 8.71452
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.013018 B = 0.002107 C = 0.001932
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2150.305506 B =13282.703191 C =14487.140590
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 C -0.090 4.090
3 C -0.131 4.131
4 C -0.122 4.122
5 C -0.141 4.141
6 C -0.106 4.106
7 C -0.080 4.080
8 C -0.071 4.071
9 H 0.130 0.870
10 C -0.141 4.141
11 C 0.520 3.480
12 O -0.570 6.570
13 N -0.723 5.723
14 C 0.124 3.876
15 C 0.079 3.921
16 H 0.070 0.930
17 C -0.137 4.137
18 N -0.680 5.680
19 C 0.064 3.936
20 C 0.437 3.563
21 O -0.623 6.623
22 N -0.572 5.572
23 C -0.332 4.332
24 H 0.078 0.922
25 C -0.012 4.012
26 N -0.919 5.919
27 Si 0.990 3.010
28 H -0.274 1.274
29 H -0.271 1.271
30 H -0.271 1.271
31 H 0.070 0.930
32 H 0.078 0.922
33 H 0.083 0.917
34 H 0.143 0.857
35 H 0.143 0.857
36 H 0.131 0.869
37 H 0.106 0.894
38 H 0.070 0.930
39 H 0.082 0.918
40 H 0.052 0.948
41 H 0.406 0.594
42 H 0.059 0.941
43 H 0.083 0.917
44 H 0.080 0.920
45 H 0.059 0.941
46 H 0.052 0.948
47 H 0.343 0.657
48 H 0.104 0.896
49 H 0.074 0.926
50 H 0.397 0.603
51 H 0.277 0.723
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.714 23.153 6.428 24.040
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.175 4.175
2 C -0.091 4.091
3 C -0.149 4.149
4 C -0.140 4.140
5 C -0.159 4.159
6 C -0.124 4.124
7 C -0.080 4.080
8 C -0.092 4.092
9 H 0.148 0.852
10 C -0.199 4.199
11 C 0.307 3.693
12 O -0.448 6.448
13 N -0.376 5.376
14 C 0.000 4.000
15 C -0.030 4.030
16 H 0.088 0.912
17 C -0.196 4.196
18 N -0.316 5.316
19 C -0.068 4.068
20 C 0.224 3.776
21 O -0.509 6.509
22 N -0.209 5.209
23 C -0.462 4.462
24 H 0.096 0.904
25 C -0.212 4.212
26 N -0.560 5.560
27 Si 0.814 3.186
28 H -0.200 1.200
29 H -0.196 1.196
30 H -0.196 1.196
31 H 0.089 0.911
32 H 0.097 0.903
33 H 0.102 0.898
34 H 0.161 0.839
35 H 0.160 0.840
36 H 0.149 0.851
37 H 0.124 0.876
38 H 0.089 0.911
39 H 0.101 0.899
40 H 0.071 0.929
41 H 0.243 0.757
42 H 0.077 0.923
43 H 0.101 0.899
44 H 0.099 0.901
45 H 0.078 0.922
46 H 0.071 0.929
47 H 0.164 0.836
48 H 0.122 0.878
49 H 0.092 0.908
50 H 0.231 0.769
51 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges 2.137 23.019 6.992 24.152
hybrid contribution -0.771 -0.603 -1.099 1.472
sum 1.366 22.416 5.893 23.218
Atomic orbital electron populations
1.20923 0.89702 1.04119 1.02755 1.20068 0.97294 0.92409 0.99284
1.21315 0.94530 0.97962 1.01055 1.21432 0.94719 0.98476 0.99362
1.21333 1.00672 0.92582 1.01325 1.21002 0.94171 0.98235 0.98982
1.19293 0.93544 0.93486 1.01723 1.20408 1.03213 0.92802 0.92745
0.85210 1.21815 1.01754 0.99520 0.96776 1.20845 0.78947 0.80935
0.88567 1.90695 1.38173 1.68149 1.47799 1.46013 1.50335 1.19959
1.21300 1.21532 1.00345 0.91473 0.86658 1.21850 0.98592 0.91035
0.91572 0.91182 1.21750 1.02069 1.00077 0.95677 1.60112 1.41436
1.22116 1.07932 1.21620 0.93488 0.96388 0.95318 1.20882 0.85309
0.83489 0.87871 1.90504 1.25291 1.70049 1.65068 1.41917 1.18639
1.34540 1.25825 1.19599 1.03771 1.17986 1.04840 0.90380 1.25998
0.95137 0.98063 1.02013 1.69655 1.09318 1.34967 1.42033 0.85028
0.77887 0.77937 0.77743 1.19952 1.19588 1.19616 0.91090 0.90320
0.89805 0.83894 0.83960 0.85069 0.87576 0.91068 0.89890 0.92932
0.75711 0.92306 0.89852 0.90098 0.92184 0.92898 0.83607 0.87801
0.90838 0.76938 0.91330
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.54 9.27 71.24 0.66 -0.88 16
2 C -0.09 -1.71 5.88 -19.87 -0.12 -1.82 16
3 C -0.13 -2.25 9.68 22.27 0.22 -2.03 16
4 C -0.12 -2.15 10.05 22.27 0.22 -1.93 16
5 C -0.14 -2.92 10.05 22.27 0.22 -2.70 16
6 C -0.11 -2.53 8.20 22.27 0.18 -2.35 16
7 C -0.08 -1.76 4.32 -19.87 -0.09 -1.85 16
8 C -0.07 -1.38 2.71 -12.28 -0.03 -1.41 16
9 H 0.13 1.89 5.55 -2.39 -0.01 1.88 16
10 C -0.14 -2.65 8.85 71.99 0.64 -2.01 16
11 C 0.52 12.67 7.05 87.66 0.62 13.28 16
12 O -0.57 -18.24 15.37 -3.01 -0.05 -18.29 16
13 N -0.72 -15.12 4.88 -463.06 -2.26 -17.38 16
14 C 0.12 2.65 5.31 86.38 0.46 3.11 16
15 C 0.08 1.63 2.81 44.91 0.13 1.76 16
16 H 0.07 1.21 7.80 -2.38 -0.02 1.19 16
17 C -0.14 -2.67 9.41 71.98 0.68 -1.99 16
18 N -0.68 -19.54 5.93 -495.56 -2.94 -22.47 16
19 C 0.06 1.99 5.97 85.56 0.51 2.50 16
20 C 0.44 19.75 7.82 87.66 0.69 20.44 16
21 O -0.62 -33.26 15.78 -3.06 -0.05 -33.31 16
22 N -0.57 -28.19 5.29 -306.98 -1.62 -29.82 16
23 C -0.33 -18.40 9.68 84.04 0.81 -17.58 16
24 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16
25 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16
26 N -0.92 -48.41 13.05 21.66 0.28 -48.13 16
27 Si 0.99 42.15 29.55 68.60 2.03 44.18 16
28 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16
29 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16
30 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16
31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16
32 H 0.08 0.87 6.35 -2.39 -0.02 0.85 16
33 H 0.08 0.81 8.04 -2.39 -0.02 0.79 16
34 H 0.14 1.69 8.06 -2.91 -0.02 1.66 16
35 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16
36 H 0.13 2.24 8.06 -2.91 -0.02 2.21 16
37 H 0.11 2.69 7.29 -2.91 -0.02 2.67 16
38 H 0.07 1.29 7.56 -2.39 -0.02 1.27 16
39 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16
40 H 0.05 1.12 7.12 -2.39 -0.02 1.10 16
41 H 0.41 7.32 6.79 -92.71 -0.63 6.69 16
42 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16
43 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16
44 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16
45 H 0.06 1.20 7.45 -2.38 -0.02 1.18 16
46 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16
47 H 0.34 10.25 6.41 -89.70 -0.58 9.67 16
48 H 0.10 2.95 7.44 -2.39 -0.02 2.94 16
49 H 0.07 1.88 8.06 -2.39 -0.02 1.86 16
50 H 0.40 18.49 7.90 -92.71 -0.73 17.75 16
51 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16
Total: -1.00 -72.63 415.96 0.69 -71.94
By element:
Atomic # 1 Polarization: 49.88 SS G_CDS: -0.97 Total: 48.91 kcal
Atomic # 6 Polarization: -1.90 SS G_CDS: 6.26 Total: 4.37 kcal
Atomic # 7 Polarization: -111.26 SS G_CDS: -6.54 Total: -117.79 kcal
Atomic # 8 Polarization: -51.51 SS G_CDS: -0.09 Total: -51.60 kcal
Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal
Total: -72.63 0.69 -71.94 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001714308499.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -7.589 kcal
(2) G-P(sol) polarization free energy of solvation -72.631 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.220 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.688 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.943 kcal
(6) G-S(sol) free energy of system = (1) + (5) -79.532 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds