Wall clock time and date at job start Wed Apr 1 2020 04:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38263 * 119.99715 * 2 1 4 4 C 1.38216 * 119.99563 * 179.73814 * 3 2 1 5 5 C 1.38261 * 119.99974 * 0.55614 * 4 3 2 6 6 C 1.38213 * 119.99742 * 359.69335 * 5 4 3 7 7 C 1.38209 * 120.00017 * 180.26633 * 2 1 3 8 8 C 1.50699 * 119.99831 * 0.02562 * 7 2 1 9 9 H 1.08997 * 109.47167 * 5.02997 * 8 7 2 10 10 C 1.53000 * 109.46907 * 125.03060 * 8 7 2 11 11 C 1.50698 * 109.47056 * 245.03141 * 8 7 2 12 12 O 1.21281 * 120.00260 * 0.02562 * 11 8 7 13 13 N 1.34780 * 120.00156 * 180.02562 * 11 8 7 14 14 C 1.46492 * 120.00081 * 180.02562 * 13 11 8 15 15 C 1.53010 * 109.47009 * 179.97438 * 14 13 11 16 16 H 1.08997 * 109.46549 * 65.00162 * 15 14 13 17 17 C 1.53002 * 109.47110 * 184.99791 * 15 14 13 18 18 N 1.46896 * 109.47121 * 305.00228 * 15 14 13 19 19 C 1.46899 * 110.99877 * 155.00117 * 18 15 14 20 20 C 1.50706 * 109.46839 * 179.97438 * 19 18 15 21 21 O 1.21290 * 120.00344 * 359.97438 * 20 19 18 22 22 N 1.34773 * 119.99675 * 179.97438 * 20 19 18 23 23 C 1.37101 * 120.00061 * 179.97438 * 22 20 19 24 24 H 1.08001 * 119.99635 * 359.97438 * 23 22 20 25 25 C 1.38947 * 119.99981 * 180.02562 * 23 22 20 26 26 N 1.31413 * 120.00128 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 119.99921 * 180.02562 * 25 23 22 28 28 H 1.48507 * 109.47100 * 359.97438 * 27 25 23 29 29 H 1.48493 * 109.47473 * 119.99306 * 27 25 23 30 30 H 1.48494 * 109.46972 * 239.99688 * 27 25 23 31 31 H 1.08999 * 109.47276 * 263.81239 * 1 2 3 32 32 H 1.08996 * 109.46939 * 143.80454 * 1 2 3 33 33 H 1.09002 * 109.46876 * 23.80831 * 1 2 3 34 34 H 1.08004 * 120.00228 * 359.97438 * 3 2 1 35 35 H 1.08003 * 119.99831 * 180.26640 * 4 3 2 36 36 H 1.07994 * 119.99911 * 179.72148 * 5 4 3 37 37 H 1.08000 * 119.99850 * 180.02562 * 6 5 4 38 38 H 1.09006 * 109.47282 * 60.00210 * 10 8 7 39 39 H 1.09007 * 109.46809 * 179.97438 * 10 8 7 40 40 H 1.08995 * 109.47551 * 300.00140 * 10 8 7 41 41 H 0.97002 * 119.99632 * 359.97438 * 13 11 8 42 42 H 1.08995 * 109.47520 * 299.99754 * 14 13 11 43 43 H 1.08998 * 109.47707 * 60.00223 * 14 13 11 44 44 H 1.09003 * 109.46945 * 60.00267 * 17 15 14 45 45 H 1.08996 * 109.46997 * 180.02562 * 17 15 14 46 46 H 1.09002 * 109.47414 * 300.00788 * 17 15 14 47 47 H 1.00897 * 111.00571 * 31.04123 * 18 15 14 48 48 H 1.08996 * 109.46913 * 299.99657 * 19 18 15 49 49 H 1.08994 * 109.47252 * 59.99701 * 19 18 15 50 50 H 0.97002 * 120.00151 * 359.97438 * 22 20 19 51 51 H 0.96998 * 119.99688 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0055 5 6 4.2717 0.0000 -0.0007 6 6 3.5806 -1.1969 -0.0059 7 6 2.1981 -1.1969 -0.0056 8 6 1.4445 -2.5020 -0.0122 9 1 0.3764 -2.3043 -0.1018 10 6 1.9071 -3.3519 -1.1974 11 6 1.7123 -3.2431 1.2723 12 8 2.4426 -2.7591 2.1109 13 7 1.1401 -4.4440 1.4893 14 6 1.3999 -5.1642 2.7382 15 6 0.6349 -6.4893 2.7314 16 1 1.0264 -7.1307 1.9419 17 6 0.8055 -7.1836 4.0841 18 7 -0.7908 -6.2304 2.4902 19 6 -1.4464 -7.4046 1.8992 20 6 -2.9045 -7.1022 1.6673 21 8 -3.3534 -6.0156 1.9654 22 7 -3.7096 -8.0391 1.1285 23 6 -5.0361 -7.7642 0.9179 24 1 -5.4360 -6.7969 1.1842 25 6 -5.8663 -8.7304 0.3630 26 7 -5.3798 -9.9076 0.0395 27 14 -7.6735 -8.3556 0.0754 28 1 -7.9687 -6.9701 0.5210 29 1 -7.9823 -8.4871 -1.3711 30 1 -8.5064 -9.3117 0.8482 31 1 -0.3634 -0.1108 1.0217 32 1 -0.3633 -0.8293 -0.6069 33 1 -0.3633 0.9402 -0.4149 34 1 1.6583 2.1328 -0.0004 35 1 4.1204 2.1327 0.0098 36 1 5.3517 0.0001 -0.0010 37 1 4.1206 -2.1322 -0.0103 38 1 2.9753 -3.5496 -1.1078 39 1 1.3624 -4.2960 -1.2019 40 1 1.7135 -2.8158 -2.1265 41 1 0.5556 -4.8310 0.8188 42 1 2.4680 -5.3614 2.8285 43 1 1.0696 -4.5588 3.5823 44 1 0.4141 -6.5422 4.8737 45 1 0.2610 -8.1278 4.0791 46 1 1.8635 -7.3757 4.2631 47 1 -0.9171 -5.4151 1.9094 48 1 -0.9697 -7.6473 0.9495 49 1 -1.3551 -8.2521 2.5786 50 1 -3.3505 -8.9080 0.8897 51 1 -5.9593 -10.5819 -0.3482 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714308501.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:05 Heat of formation + Delta-G solvation = -57.254530 kcal Electronic energy + Delta-G solvation = -30115.842439 eV Core-core repulsion = 26014.512917 eV Total energy + Delta-G solvation = -4101.329523 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -40.64311 -39.18043 -38.40226 -36.98274 -34.56879 -34.13054 -33.69058 -32.81552 -31.35379 -30.87800 -29.68606 -27.04708 -26.84604 -26.21433 -24.76937 -23.96114 -22.31088 -21.32299 -20.68681 -19.96656 -19.31624 -17.97142 -17.43546 -16.98057 -16.28668 -15.99841 -15.89863 -15.53394 -15.26506 -14.84981 -14.68069 -14.47951 -14.19807 -13.96070 -13.85034 -13.63185 -13.47621 -13.24937 -12.91702 -12.83023 -12.63987 -12.58072 -12.44312 -12.35703 -12.04512 -11.93356 -11.80020 -11.75760 -11.68602 -11.44980 -11.13262 -11.08723 -10.93156 -10.85474 -10.37609 -10.26501 -9.86968 -9.56393 -9.21100 -8.91579 -8.72984 -8.52110 -8.17182 -8.00852 -6.46116 -3.87001 1.17360 1.27783 2.52974 2.99862 3.13209 3.24325 3.31322 3.64999 3.84952 4.01030 4.24661 4.30205 4.47348 4.62518 4.72717 4.74747 4.84042 4.91441 4.94973 4.98837 5.11381 5.15208 5.20991 5.26171 5.29853 5.35574 5.45054 5.49923 5.50682 5.60691 5.64992 5.66077 5.73573 5.74354 5.78756 5.91461 5.92126 5.96045 5.99951 6.15795 6.23011 6.32387 6.34813 6.37251 6.48987 6.86166 7.11311 7.30203 7.51393 7.53376 8.01867 8.08468 8.56237 9.13570 9.49362 10.00412 10.71547 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012576 B = 0.002154 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.841136 B =12995.406769 C =14489.391791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.076 4.076 3 C -0.124 4.124 4 C -0.117 4.117 5 C -0.129 4.129 6 C -0.084 4.084 7 C -0.064 4.064 8 C -0.080 4.080 9 H 0.112 0.888 10 C -0.142 4.142 11 C 0.522 3.478 12 O -0.530 6.530 13 N -0.731 5.731 14 C 0.119 3.881 15 C 0.072 3.928 16 H 0.049 0.951 17 C -0.138 4.138 18 N -0.664 5.664 19 C 0.049 3.951 20 C 0.439 3.561 21 O -0.582 6.582 22 N -0.563 5.563 23 C -0.299 4.299 24 H 0.104 0.896 25 C 0.022 3.978 26 N -0.901 5.901 27 Si 0.929 3.071 28 H -0.268 1.268 29 H -0.281 1.281 30 H -0.281 1.281 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.399 0.601 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.066 0.934 45 H 0.061 0.939 46 H 0.056 0.944 47 H 0.347 0.653 48 H 0.043 0.957 49 H 0.088 0.912 50 H 0.392 0.608 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.914 12.680 -2.674 22.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.076 4.076 3 C -0.142 4.142 4 C -0.135 4.135 5 C -0.147 4.147 6 C -0.102 4.102 7 C -0.064 4.064 8 C -0.101 4.101 9 H 0.130 0.870 10 C -0.199 4.199 11 C 0.308 3.692 12 O -0.406 6.406 13 N -0.384 5.384 14 C -0.005 4.005 15 C -0.039 4.039 16 H 0.066 0.934 17 C -0.196 4.196 18 N -0.299 5.299 19 C -0.083 4.083 20 C 0.224 3.776 21 O -0.467 6.467 22 N -0.199 5.199 23 C -0.428 4.428 24 H 0.121 0.879 25 C -0.180 4.180 26 N -0.542 5.542 27 Si 0.756 3.244 28 H -0.192 1.192 29 H -0.208 1.208 30 H -0.207 1.207 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.234 0.766 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.085 0.915 45 H 0.080 0.920 46 H 0.075 0.925 47 H 0.168 0.832 48 H 0.061 0.939 49 H 0.106 0.894 50 H 0.225 0.775 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 18.851 13.440 -1.298 23.188 hybrid contribution -0.651 -0.755 -1.466 1.773 sum 18.200 12.685 -2.763 22.356 Atomic orbital electron populations 1.20906 0.91192 1.02911 1.02838 1.19759 0.96006 0.92561 0.99244 1.20969 0.94264 0.97227 1.01704 1.21102 0.94309 0.97938 1.00176 1.21061 0.99709 0.92487 1.01437 1.20858 0.93418 0.97988 0.97978 1.19096 0.93516 0.92620 1.01205 1.20415 1.02523 0.93354 0.93854 0.86975 1.21810 1.02041 0.99298 0.96750 1.20419 0.79739 0.80744 0.88339 1.90718 1.36749 1.66883 1.46267 1.46054 1.50659 1.20574 1.21126 1.21596 0.99759 0.92376 0.86744 1.21810 0.88391 0.94933 0.98733 0.93361 1.21736 1.00847 1.00934 0.96126 1.60112 1.09986 1.05888 1.53920 1.21759 0.94522 0.94139 0.97924 1.19791 0.87302 0.86242 0.84224 1.90532 1.76140 1.24206 1.55782 1.41874 1.09154 1.14378 1.54537 1.19749 0.83826 1.01045 1.38217 0.87853 1.25270 1.00611 0.94984 0.97108 1.69618 1.36872 1.04693 1.43049 0.85801 0.81914 0.78757 0.77890 1.19201 1.20751 1.20727 0.90800 0.91030 0.91370 0.86147 0.86297 0.86296 0.86485 0.91851 0.91608 0.90994 0.76605 0.90889 0.90365 0.91510 0.91975 0.92508 0.83177 0.93868 0.89392 0.77471 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.09 9.27 36.01 0.33 -0.76 16 2 C -0.08 -0.80 5.88 -104.62 -0.62 -1.41 16 3 C -0.12 -1.20 9.68 -39.58 -0.38 -1.59 16 4 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 5 C -0.13 -1.27 10.05 -39.58 -0.40 -1.67 16 6 C -0.08 -0.92 8.20 -39.58 -0.32 -1.25 16 7 C -0.06 -0.71 4.32 -104.63 -0.45 -1.16 16 8 C -0.08 -0.80 2.71 -92.93 -0.25 -1.05 16 9 H 0.11 1.03 5.55 -51.93 -0.29 0.74 16 10 C -0.14 -1.11 8.84 37.16 0.33 -0.78 16 11 C 0.52 6.38 7.05 -10.99 -0.08 6.30 16 12 O -0.53 -8.33 15.38 5.56 0.09 -8.25 16 13 N -0.73 -7.93 4.88 -60.30 -0.29 -8.22 16 14 C 0.12 1.33 5.31 -4.04 -0.02 1.31 16 15 C 0.07 0.81 2.81 -67.71 -0.19 0.62 16 16 H 0.05 0.50 7.80 -51.93 -0.40 0.10 16 17 C -0.14 -1.48 9.42 37.16 0.35 -1.13 16 18 N -0.66 -9.97 5.92 -107.99 -0.64 -10.61 16 19 C 0.05 0.81 5.97 -4.97 -0.03 0.78 16 20 C 0.44 9.96 7.82 -10.98 -0.09 9.87 16 21 O -0.58 -15.34 15.78 5.55 0.09 -15.25 16 22 N -0.56 -13.82 5.29 -10.96 -0.06 -13.87 16 23 C -0.30 -8.15 9.68 -14.93 -0.14 -8.29 16 24 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 25 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 26 N -0.90 -24.02 13.05 55.50 0.72 -23.30 16 27 Si 0.93 20.68 29.55 -169.99 -5.02 15.66 16 28 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 29 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 30 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.58 6.35 -51.93 -0.33 0.26 16 33 H 0.07 0.51 8.04 -51.93 -0.42 0.09 16 34 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 35 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 36 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.12 1.21 7.28 -52.49 -0.38 0.83 16 38 H 0.06 0.49 7.12 -51.93 -0.37 0.12 16 39 H 0.06 0.46 7.56 -51.92 -0.39 0.06 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.40 3.85 6.79 -40.82 -0.28 3.57 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.69 7.45 -51.93 -0.39 0.30 16 46 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.35 5.33 6.41 -39.29 -0.25 5.08 16 48 H 0.04 0.62 8.05 -51.93 -0.42 0.20 16 49 H 0.09 1.36 7.44 -51.93 -0.39 0.97 16 50 H 0.39 9.19 7.90 -40.82 -0.32 8.86 16 51 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 415.96 15.07 6.27 6.27 Total: -1.00 -33.23 415.96 -9.25 -42.48 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: -7.94 Total: 16.30 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -2.46 Total: -1.21 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: -0.27 Total: -56.01 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: 0.17 Total: -23.50 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -33.23 -9.25 -42.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714308501.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.774 kcal (2) G-P(sol) polarization free energy of solvation -33.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds