Wall clock time and date at job start Wed Apr 1 2020 04:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38263 * 119.99715 * 2 1 4 4 C 1.38216 * 119.99563 * 179.73814 * 3 2 1 5 5 C 1.38261 * 119.99974 * 0.55614 * 4 3 2 6 6 C 1.38213 * 119.99742 * 359.69335 * 5 4 3 7 7 C 1.38209 * 120.00017 * 180.26633 * 2 1 3 8 8 C 1.50699 * 119.99831 * 0.02562 * 7 2 1 9 9 H 1.08997 * 109.47167 * 5.02997 * 8 7 2 10 10 C 1.53000 * 109.46907 * 125.03060 * 8 7 2 11 11 C 1.50698 * 109.47056 * 245.03141 * 8 7 2 12 12 O 1.21281 * 120.00260 * 0.02562 * 11 8 7 13 13 N 1.34780 * 120.00156 * 180.02562 * 11 8 7 14 14 C 1.46492 * 120.00081 * 180.02562 * 13 11 8 15 15 C 1.53010 * 109.47009 * 179.97438 * 14 13 11 16 16 H 1.08997 * 109.46549 * 65.00162 * 15 14 13 17 17 C 1.53002 * 109.47110 * 184.99791 * 15 14 13 18 18 N 1.46896 * 109.47121 * 305.00228 * 15 14 13 19 19 C 1.46899 * 110.99877 * 155.00117 * 18 15 14 20 20 C 1.50706 * 109.46839 * 179.97438 * 19 18 15 21 21 O 1.21290 * 120.00344 * 359.97438 * 20 19 18 22 22 N 1.34773 * 119.99675 * 179.97438 * 20 19 18 23 23 C 1.37101 * 120.00061 * 179.97438 * 22 20 19 24 24 H 1.08001 * 119.99635 * 359.97438 * 23 22 20 25 25 C 1.38947 * 119.99981 * 180.02562 * 23 22 20 26 26 N 1.31413 * 120.00128 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 119.99921 * 180.02562 * 25 23 22 28 28 H 1.48507 * 109.47100 * 359.97438 * 27 25 23 29 29 H 1.48493 * 109.47473 * 119.99306 * 27 25 23 30 30 H 1.48494 * 109.46972 * 239.99688 * 27 25 23 31 31 H 1.08999 * 109.47276 * 263.81239 * 1 2 3 32 32 H 1.08996 * 109.46939 * 143.80454 * 1 2 3 33 33 H 1.09002 * 109.46876 * 23.80831 * 1 2 3 34 34 H 1.08004 * 120.00228 * 359.97438 * 3 2 1 35 35 H 1.08003 * 119.99831 * 180.26640 * 4 3 2 36 36 H 1.07994 * 119.99911 * 179.72148 * 5 4 3 37 37 H 1.08000 * 119.99850 * 180.02562 * 6 5 4 38 38 H 1.09006 * 109.47282 * 60.00210 * 10 8 7 39 39 H 1.09007 * 109.46809 * 179.97438 * 10 8 7 40 40 H 1.08995 * 109.47551 * 300.00140 * 10 8 7 41 41 H 0.97002 * 119.99632 * 359.97438 * 13 11 8 42 42 H 1.08995 * 109.47520 * 299.99754 * 14 13 11 43 43 H 1.08998 * 109.47707 * 60.00223 * 14 13 11 44 44 H 1.09003 * 109.46945 * 60.00267 * 17 15 14 45 45 H 1.08996 * 109.46997 * 180.02562 * 17 15 14 46 46 H 1.09002 * 109.47414 * 300.00788 * 17 15 14 47 47 H 1.00897 * 111.00571 * 31.04123 * 18 15 14 48 48 H 1.08996 * 109.46913 * 299.99657 * 19 18 15 49 49 H 1.08994 * 109.47252 * 59.99701 * 19 18 15 50 50 H 0.97002 * 120.00151 * 359.97438 * 22 20 19 51 51 H 0.96998 * 119.99688 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0055 5 6 4.2717 0.0000 -0.0007 6 6 3.5806 -1.1969 -0.0059 7 6 2.1981 -1.1969 -0.0056 8 6 1.4445 -2.5020 -0.0122 9 1 0.3764 -2.3043 -0.1018 10 6 1.9071 -3.3519 -1.1974 11 6 1.7123 -3.2431 1.2723 12 8 2.4426 -2.7591 2.1109 13 7 1.1401 -4.4440 1.4893 14 6 1.3999 -5.1642 2.7382 15 6 0.6349 -6.4893 2.7314 16 1 1.0264 -7.1307 1.9419 17 6 0.8055 -7.1836 4.0841 18 7 -0.7908 -6.2304 2.4902 19 6 -1.4464 -7.4046 1.8992 20 6 -2.9045 -7.1022 1.6673 21 8 -3.3534 -6.0156 1.9654 22 7 -3.7096 -8.0391 1.1285 23 6 -5.0361 -7.7642 0.9179 24 1 -5.4360 -6.7969 1.1842 25 6 -5.8663 -8.7304 0.3630 26 7 -5.3798 -9.9076 0.0395 27 14 -7.6735 -8.3556 0.0754 28 1 -7.9687 -6.9701 0.5210 29 1 -7.9823 -8.4871 -1.3711 30 1 -8.5064 -9.3117 0.8482 31 1 -0.3634 -0.1108 1.0217 32 1 -0.3633 -0.8293 -0.6069 33 1 -0.3633 0.9402 -0.4149 34 1 1.6583 2.1328 -0.0004 35 1 4.1204 2.1327 0.0098 36 1 5.3517 0.0001 -0.0010 37 1 4.1206 -2.1322 -0.0103 38 1 2.9753 -3.5496 -1.1078 39 1 1.3624 -4.2960 -1.2019 40 1 1.7135 -2.8158 -2.1265 41 1 0.5556 -4.8310 0.8188 42 1 2.4680 -5.3614 2.8285 43 1 1.0696 -4.5588 3.5823 44 1 0.4141 -6.5422 4.8737 45 1 0.2610 -8.1278 4.0791 46 1 1.8635 -7.3757 4.2631 47 1 -0.9171 -5.4151 1.9094 48 1 -0.9697 -7.6473 0.9495 49 1 -1.3551 -8.2521 2.5786 50 1 -3.3505 -8.9080 0.8897 51 1 -5.9593 -10.5819 -0.3482 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714308501.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:03 Heat of formation + Delta-G solvation = -79.735978 kcal Electronic energy + Delta-G solvation = -30116.817308 eV Core-core repulsion = 26014.512917 eV Total energy + Delta-G solvation = -4102.304391 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -41.51352 -40.28910 -39.83843 -38.17387 -35.97053 -35.40306 -34.82445 -33.54782 -33.26168 -32.04876 -30.42198 -28.15941 -27.74831 -27.40087 -25.82955 -25.35512 -23.11436 -22.09741 -21.66789 -21.15773 -20.74704 -19.90503 -18.45646 -17.84292 -17.57607 -16.91704 -16.91488 -16.86083 -16.43859 -16.24455 -15.83727 -15.68235 -15.42743 -15.26276 -14.88879 -14.60317 -14.41784 -14.25519 -13.96731 -13.78018 -13.68881 -13.49130 -13.41079 -13.29058 -13.25263 -13.03887 -12.92623 -12.79581 -12.75506 -12.57529 -12.51455 -12.38566 -12.11116 -11.89225 -11.81707 -11.60285 -11.50354 -10.83964 -10.33254 -10.16802 -10.00142 -9.67214 -9.48271 -9.36906 -8.46022 -5.94171 0.41943 0.51872 1.37058 1.43012 1.56501 1.58047 2.06086 2.12090 2.29542 2.85403 2.91363 3.21744 3.48984 3.53992 3.67228 3.75353 3.98384 4.03724 4.14861 4.16426 4.19080 4.26320 4.28443 4.39399 4.44759 4.46472 4.60580 4.62506 4.62695 4.71129 4.76415 4.80546 4.82406 4.91520 4.92675 4.97289 5.04749 5.15049 5.20765 5.29068 5.30089 5.42468 5.45360 5.59446 5.63088 5.73327 5.88879 6.09859 6.13889 6.35840 6.41129 6.61198 7.14124 7.15597 7.57845 8.13067 8.71385 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012576 B = 0.002154 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.841136 B =12995.406769 C =14489.391791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.094 4.094 3 C -0.133 4.133 4 C -0.123 4.123 5 C -0.139 4.139 6 C -0.101 4.101 7 C -0.080 4.080 8 C -0.077 4.077 9 H 0.118 0.882 10 C -0.137 4.137 11 C 0.521 3.479 12 O -0.570 6.570 13 N -0.723 5.723 14 C 0.124 3.876 15 C 0.079 3.921 16 H 0.070 0.930 17 C -0.138 4.138 18 N -0.681 5.681 19 C 0.064 3.936 20 C 0.437 3.563 21 O -0.623 6.623 22 N -0.572 5.572 23 C -0.330 4.330 24 H 0.078 0.922 25 C -0.013 4.013 26 N -0.919 5.919 27 Si 0.990 3.010 28 H -0.274 1.274 29 H -0.270 1.270 30 H -0.273 1.273 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.139 0.861 35 H 0.143 0.857 36 H 0.136 0.864 37 H 0.116 0.884 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.406 0.594 42 H 0.084 0.916 43 H 0.058 0.942 44 H 0.052 0.948 45 H 0.059 0.941 46 H 0.080 0.920 47 H 0.343 0.657 48 H 0.074 0.926 49 H 0.104 0.896 50 H 0.397 0.603 51 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.575 12.330 -3.533 23.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.094 4.094 3 C -0.151 4.151 4 C -0.140 4.140 5 C -0.157 4.157 6 C -0.119 4.119 7 C -0.080 4.080 8 C -0.097 4.097 9 H 0.136 0.864 10 C -0.195 4.195 11 C 0.308 3.692 12 O -0.448 6.448 13 N -0.376 5.376 14 C 0.000 4.000 15 C -0.030 4.030 16 H 0.088 0.912 17 C -0.196 4.196 18 N -0.316 5.316 19 C -0.068 4.068 20 C 0.225 3.775 21 O -0.509 6.509 22 N -0.210 5.210 23 C -0.460 4.460 24 H 0.096 0.904 25 C -0.213 4.213 26 N -0.560 5.560 27 Si 0.815 3.185 28 H -0.199 1.199 29 H -0.195 1.195 30 H -0.198 1.198 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.157 0.843 35 H 0.160 0.840 36 H 0.154 0.846 37 H 0.134 0.866 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.243 0.757 42 H 0.102 0.898 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.099 0.901 47 H 0.164 0.836 48 H 0.092 0.908 49 H 0.122 0.878 50 H 0.231 0.769 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 19.524 13.049 -2.170 23.584 hybrid contribution -0.795 -0.603 -1.151 1.523 sum 18.729 12.446 -3.320 22.731 Atomic orbital electron populations 1.20917 0.90417 1.03976 1.02418 1.20041 0.96845 0.92873 0.99601 1.21291 0.94773 0.97756 1.01231 1.21434 0.94433 0.98778 0.99389 1.21361 1.00795 0.92423 1.01074 1.21003 0.93673 0.98488 0.98736 1.19300 0.93837 0.93237 1.01675 1.20430 1.02793 0.93151 0.93368 0.86411 1.21808 1.02098 0.99479 0.96078 1.20829 0.78979 0.80795 0.88619 1.90695 1.38612 1.67839 1.47676 1.46010 1.50236 1.20235 1.21115 1.21528 1.00250 0.91987 0.86222 1.21848 0.86148 0.95252 0.99776 0.91168 1.21751 1.02376 1.00281 0.95176 1.60104 1.12335 1.05261 1.53916 1.21618 0.90139 0.95056 0.99984 1.20887 0.89589 0.85032 0.82009 1.90504 1.77666 1.25864 1.56911 1.41932 1.08693 1.15017 1.55335 1.19669 0.85616 1.00630 1.40095 0.90396 1.26003 1.04254 0.94674 0.96341 1.69670 1.38232 1.05114 1.43009 0.84903 0.77181 0.78202 0.78264 1.19863 1.19538 1.19837 0.91787 0.90525 0.89907 0.84348 0.83961 0.84568 0.86626 0.91911 0.90505 0.90145 0.75717 0.89804 0.92361 0.92910 0.92191 0.90086 0.83624 0.90817 0.87792 0.76930 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.12 9.27 71.24 0.66 -1.45 16 2 C -0.09 -1.95 5.88 -19.86 -0.12 -2.07 16 3 C -0.13 -2.47 9.68 22.27 0.22 -2.25 16 4 C -0.12 -2.15 10.05 22.27 0.22 -1.93 16 5 C -0.14 -2.65 10.05 22.27 0.22 -2.42 16 6 C -0.10 -2.20 8.20 22.27 0.18 -2.02 16 7 C -0.08 -1.76 4.32 -19.87 -0.09 -1.85 16 8 C -0.08 -1.49 2.71 -12.29 -0.03 -1.53 16 9 H 0.12 2.12 5.55 -2.39 -0.01 2.11 16 10 C -0.14 -2.00 8.84 71.98 0.64 -1.36 16 11 C 0.52 12.64 7.05 87.66 0.62 13.26 16 12 O -0.57 -18.16 15.38 -3.03 -0.05 -18.20 16 13 N -0.72 -15.05 4.88 -463.07 -2.26 -17.31 16 14 C 0.12 2.64 5.31 86.38 0.46 3.10 16 15 C 0.08 1.63 2.81 44.92 0.13 1.76 16 16 H 0.07 1.21 7.80 -2.39 -0.02 1.19 16 17 C -0.14 -2.67 9.42 71.98 0.68 -1.99 16 18 N -0.68 -19.53 5.92 -495.57 -2.94 -22.46 16 19 C 0.06 1.99 5.97 85.56 0.51 2.50 16 20 C 0.44 19.77 7.82 87.66 0.69 20.46 16 21 O -0.62 -33.34 15.78 -3.06 -0.05 -33.39 16 22 N -0.57 -28.21 5.29 -306.98 -1.62 -29.83 16 23 C -0.33 -18.29 9.68 84.04 0.81 -17.48 16 24 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 25 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 26 N -0.92 -48.40 13.05 21.66 0.28 -48.12 16 27 Si 0.99 42.14 29.55 68.60 2.03 44.17 16 28 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 29 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 30 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.08 1.22 6.35 -2.39 -0.02 1.20 16 33 H 0.08 1.16 8.04 -2.39 -0.02 1.14 16 34 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 35 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 36 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 37 H 0.12 2.43 7.28 -2.91 -0.02 2.41 16 38 H 0.06 0.92 7.12 -2.38 -0.02 0.91 16 39 H 0.08 0.93 7.56 -2.38 -0.02 0.91 16 40 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.41 7.28 6.79 -92.71 -0.63 6.65 16 42 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.06 1.20 7.45 -2.39 -0.02 1.18 16 46 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.34 10.25 6.41 -89.70 -0.58 9.68 16 48 H 0.07 1.88 8.05 -2.39 -0.02 1.86 16 49 H 0.10 2.95 7.44 -2.39 -0.02 2.93 16 50 H 0.40 18.48 7.90 -92.71 -0.73 17.74 16 51 H 0.28 13.65 8.31 -92.71 -0.77 12.88 16 Total: -1.00 -72.55 415.96 0.69 -71.86 By element: Atomic # 1 Polarization: 49.74 SS G_CDS: -0.97 Total: 48.77 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: 6.26 Total: 4.52 kcal Atomic # 7 Polarization: -111.19 SS G_CDS: -6.54 Total: -117.73 kcal Atomic # 8 Polarization: -51.50 SS G_CDS: -0.09 Total: -51.59 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -72.55 0.69 -71.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714308501.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.878 kcal (2) G-P(sol) polarization free energy of solvation -72.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds