Wall clock time and date at job start Wed Apr 1 2020 05:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38361 * 119.92410 * 2 1 4 4 C 1.38359 * 120.29071 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.92546 * 179.97438 * 4 3 2 6 6 C 1.37961 * 120.14583 * 359.96731 * 4 3 2 7 7 C 1.39577 * 119.84990 * 0.02562 * 6 4 3 8 8 C 1.47846 * 120.13867 * 179.97438 * 7 6 4 9 9 O 1.21546 * 120.00495 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99692 * 180.02562 * 8 7 6 11 11 C 1.46494 * 120.00059 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.47501 * 179.97438 * 11 10 8 13 13 H 1.08999 * 109.47268 * 305.00906 * 12 11 10 14 14 C 1.53009 * 109.46678 * 65.00107 * 12 11 10 15 15 C 1.52993 * 109.47435 * 185.00167 * 12 11 10 16 16 N 1.46905 * 109.47039 * 175.00361 * 15 12 11 17 17 C 1.46901 * 110.99870 * 180.02562 * 16 15 12 18 18 C 1.50697 * 109.46943 * 180.02562 * 17 16 15 19 19 O 1.21292 * 120.00024 * 359.97438 * 18 17 16 20 20 N 1.34776 * 119.99767 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99759 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00171 * 359.97438 * 21 20 18 23 23 C 1.38951 * 120.00074 * 179.97438 * 21 20 18 24 24 N 1.31416 * 119.99768 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00310 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47191 * 60.00175 * 25 23 21 27 27 H 1.48495 * 109.47229 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47299 * 300.00478 * 25 23 21 29 29 C 1.37959 * 119.92957 * 180.24436 * 2 1 3 30 30 H 1.08996 * 109.47039 * 90.01065 * 1 2 3 31 31 H 1.09004 * 109.46727 * 210.00705 * 1 2 3 32 32 H 1.09000 * 109.47281 * 330.00731 * 1 2 3 33 33 H 1.08003 * 119.85430 * 359.96518 * 3 2 1 34 34 H 1.09001 * 109.46818 * 269.97131 * 5 4 3 35 35 H 1.08998 * 109.47527 * 29.97516 * 5 4 3 36 36 H 1.09000 * 109.46874 * 149.97703 * 5 4 3 37 37 H 1.08002 * 120.07486 * 180.02562 * 6 4 3 38 38 H 0.97000 * 119.99981 * 0.02562 * 10 8 7 39 39 H 1.09001 * 109.47033 * 60.00141 * 11 10 8 40 40 H 1.09003 * 109.47588 * 300.00243 * 11 10 8 41 41 H 1.08995 * 109.47462 * 300.00645 * 14 12 11 42 42 H 1.08999 * 109.46618 * 60.00401 * 14 12 11 43 43 H 1.08995 * 109.46725 * 179.97438 * 14 12 11 44 44 H 1.09001 * 109.47393 * 55.00642 * 15 12 11 45 45 H 1.08998 * 109.47408 * 295.00288 * 15 12 11 46 46 H 1.00901 * 110.99869 * 56.04956 * 16 15 12 47 47 H 1.09004 * 109.47031 * 299.99620 * 17 16 15 48 48 H 1.08995 * 109.47111 * 59.99900 * 17 16 15 49 49 H 0.96997 * 120.00713 * 359.97438 * 20 18 17 50 50 H 0.96999 * 119.99907 * 179.97438 * 24 23 21 51 51 H 1.08001 * 120.07128 * 0.02693 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1992 0.0000 4 6 3.5808 1.2080 -0.0005 5 6 4.3242 2.5189 -0.0011 6 6 4.2813 0.0194 -0.0004 7 6 3.5910 -1.1937 -0.0002 8 6 4.3353 -2.4712 -0.0007 9 8 5.5507 -2.4666 -0.0016 10 7 3.6659 -3.6410 -0.0010 11 6 4.4032 -4.9069 -0.0020 12 6 3.4135 -6.0737 -0.0016 13 1 2.7295 -5.9697 0.8406 14 6 2.6177 -6.0678 -1.3085 15 6 4.1795 -7.3922 0.1231 16 7 3.2257 -8.5030 0.2438 17 6 3.9270 -9.7880 0.3664 18 6 2.9184 -10.9012 0.4872 19 8 1.7321 -10.6489 0.4731 20 7 3.3346 -12.1770 0.6120 21 6 2.4171 -13.1896 0.7225 22 1 1.3608 -12.9650 0.7099 23 6 2.8461 -14.5050 0.8506 24 7 4.1315 -14.7783 0.8664 25 14 1.5960 -15.8847 1.0018 26 1 0.7327 -15.9051 -0.2064 27 1 2.3049 -17.1836 1.1261 28 1 0.7564 -15.6622 2.2063 29 6 2.1953 -1.1956 -0.0051 30 1 -0.3633 -0.0002 -1.0276 31 1 -0.3633 -0.8900 0.5140 32 1 -0.3634 0.8900 0.5137 33 1 1.6536 2.1324 -0.0006 34 1 4.5035 2.8344 -1.0289 35 1 3.7294 3.2742 0.5124 36 1 5.2776 2.3960 0.5127 37 1 5.3613 0.0277 -0.0004 38 1 2.6959 -3.6448 -0.0014 39 1 5.0304 -4.9627 0.8877 40 1 5.0298 -4.9618 -0.8923 41 1 2.0720 -5.1285 -1.3974 42 1 3.3017 -6.1718 -2.1507 43 1 1.9130 -6.8993 -1.3084 44 1 4.8147 -7.3610 1.0083 45 1 4.7975 -7.5386 -0.7627 46 1 2.5833 -8.5142 -0.5342 47 1 4.5436 -9.9512 -0.5176 48 1 4.5603 -9.7731 1.2534 49 1 4.2833 -12.3788 0.6237 50 1 4.4310 -15.6965 0.9562 51 1 1.6554 -2.1309 -0.0095 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714447124.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:33 Heat of formation + Delta-G solvation = -68.709716 kcal Electronic energy + Delta-G solvation = -28604.227625 eV Core-core repulsion = 24502.401368 eV Total energy + Delta-G solvation = -4101.826257 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.66252 -39.12209 -38.36841 -37.23358 -34.99846 -34.06339 -33.83253 -32.91949 -31.90640 -31.18007 -27.94894 -27.42574 -27.30873 -26.79092 -25.07138 -23.94054 -22.81831 -21.16028 -20.77012 -20.13706 -19.21540 -17.93572 -17.73753 -16.84344 -16.44520 -16.19317 -15.80498 -15.49182 -15.34751 -14.91918 -14.65940 -14.50339 -14.33133 -14.18984 -13.83956 -13.71493 -13.67588 -13.53651 -13.30724 -13.00566 -12.97937 -12.81900 -12.65382 -12.42232 -12.09147 -12.00895 -11.92536 -11.59045 -11.54643 -11.50899 -11.21007 -11.06130 -10.97430 -10.90349 -10.44222 -10.22903 -10.20104 -9.49911 -9.44321 -9.17693 -9.06507 -8.46474 -8.06639 -7.95752 -6.41405 -3.82380 0.44826 0.87750 2.51748 2.82724 3.20214 3.25989 3.30306 3.43041 3.91097 4.08595 4.22478 4.26572 4.27204 4.31010 4.64547 4.70136 4.74495 4.78163 4.84302 4.86914 4.98415 5.06966 5.13363 5.13547 5.17500 5.25721 5.30179 5.34953 5.39220 5.42372 5.52449 5.57395 5.59005 5.67610 5.71158 5.79443 5.84655 5.87193 5.98879 6.00415 6.03285 6.08433 6.11191 6.20183 6.27474 6.45452 7.18275 7.20072 7.55119 7.65589 7.90688 8.06272 8.61487 9.17876 9.54533 10.05951 10.76233 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.027260 B = 0.001379 C = 0.001324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.901434 B =20304.627959 C =21141.667223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.088 4.088 3 C -0.098 4.098 4 C -0.090 4.090 5 C -0.115 4.115 6 C -0.067 4.067 7 C -0.125 4.125 8 C 0.557 3.443 9 O -0.537 6.537 10 N -0.721 5.721 11 C 0.125 3.875 12 C -0.102 4.102 13 H 0.089 0.911 14 C -0.153 4.153 15 C 0.066 3.934 16 N -0.668 5.668 17 C 0.050 3.950 18 C 0.440 3.560 19 O -0.584 6.584 20 N -0.563 5.563 21 C -0.301 4.301 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.273 1.273 29 C -0.094 4.094 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.126 0.874 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.135 0.865 38 H 0.400 0.600 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.031 0.969 46 H 0.349 0.651 47 H 0.043 0.957 48 H 0.086 0.914 49 H 0.392 0.608 50 H 0.272 0.728 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.904 32.797 -3.461 32.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.089 4.089 3 C -0.116 4.116 4 C -0.090 4.090 5 C -0.172 4.172 6 C -0.086 4.086 7 C -0.128 4.128 8 C 0.344 3.656 9 O -0.415 6.415 10 N -0.374 5.374 11 C 0.001 3.999 12 C -0.121 4.121 13 H 0.108 0.892 14 C -0.210 4.210 15 C -0.064 4.064 16 N -0.302 5.302 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.469 6.469 20 N -0.200 5.200 21 C -0.430 4.430 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.112 4.112 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.144 0.856 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.153 0.847 38 H 0.236 0.764 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.049 0.951 46 H 0.169 0.831 47 H 0.061 0.939 48 H 0.105 0.895 49 H 0.226 0.774 50 H 0.082 0.918 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.803 32.801 -2.776 32.928 hybrid contribution -0.079 -1.130 -0.800 1.387 sum -0.882 31.671 -3.576 31.884 Atomic orbital electron populations 1.20825 0.90533 1.03226 1.02704 1.19855 0.96440 0.92725 0.99834 1.21144 0.93549 0.97788 0.99135 1.19901 0.93771 0.95405 0.99961 1.20811 1.00180 0.93522 1.02653 1.21152 1.00680 0.90358 0.96433 1.19915 0.93567 0.93576 1.05713 1.18271 0.87233 0.83692 0.76388 1.90778 1.13431 1.87617 1.49699 1.45925 1.10548 1.05690 1.75198 1.21422 0.94348 0.81420 1.02723 1.21372 0.97467 0.93486 0.99789 0.89243 1.21908 1.00384 1.02133 0.96596 1.21876 0.94075 0.89844 1.00602 1.60089 1.18088 1.01283 1.50714 1.21671 0.95891 0.89411 1.01272 1.19809 0.89451 0.83612 0.84545 1.90515 1.17326 1.83193 1.55842 1.41856 1.09683 1.04724 1.63702 1.19659 0.91087 0.85169 1.47131 0.87975 1.25261 0.96740 0.98581 0.97294 1.69607 1.13471 1.21001 1.50212 0.85915 0.79840 0.79367 0.79074 1.19927 1.20971 1.19884 1.21180 0.92816 0.98127 0.99099 0.90854 0.91130 0.91294 0.85607 0.90896 0.91318 0.91168 0.84678 0.76366 0.90990 0.91173 0.92838 0.92576 0.91331 0.90716 0.95133 0.83073 0.93855 0.89541 0.77437 0.91815 0.85630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.51 10.01 36.01 0.36 -0.15 16 2 C -0.09 -0.58 5.87 -104.68 -0.61 -1.20 16 3 C -0.10 -0.63 9.34 -39.49 -0.37 -1.00 16 4 C -0.09 -0.65 5.87 -104.68 -0.61 -1.26 16 5 C -0.12 -0.55 10.01 36.00 0.36 -0.19 16 6 C -0.07 -0.61 9.24 -39.18 -0.36 -0.97 16 7 C -0.12 -1.17 5.87 -104.97 -0.62 -1.79 16 8 C 0.56 6.25 7.77 -12.33 -0.10 6.16 16 9 O -0.54 -7.92 16.35 5.32 0.09 -7.83 16 10 N -0.72 -6.51 5.24 -61.25 -0.32 -6.83 16 11 C 0.12 1.20 5.06 -4.04 -0.02 1.18 16 12 C -0.10 -0.98 2.63 -90.62 -0.24 -1.22 16 13 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 14 C -0.15 -1.38 8.84 37.16 0.33 -1.06 16 15 C 0.07 0.78 5.14 -3.82 -0.02 0.76 16 16 N -0.67 -10.49 6.12 -115.06 -0.70 -11.20 16 17 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 18 C 0.44 10.41 7.82 -10.99 -0.09 10.32 16 19 O -0.58 -15.83 15.78 5.55 0.09 -15.74 16 20 N -0.56 -14.31 5.29 -10.96 -0.06 -14.37 16 21 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 22 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 24 N -0.90 -24.56 13.05 55.50 0.72 -23.84 16 25 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 29 C -0.09 -0.69 9.19 -39.19 -0.36 -1.05 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 32 H 0.07 0.24 8.08 -51.93 -0.42 -0.18 16 33 H 0.13 0.54 8.06 -52.48 -0.42 0.12 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 36 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 37 H 0.14 1.25 7.65 -52.49 -0.40 0.85 16 38 H 0.40 2.73 5.69 -40.82 -0.23 2.49 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.05 0.40 7.18 -51.93 -0.37 0.02 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.71 6.68 -51.93 -0.35 0.36 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.35 5.61 6.68 -39.29 -0.26 5.34 16 47 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 49 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 50 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 51 H 0.13 0.67 6.41 -52.49 -0.34 0.34 16 LS Contribution 422.19 15.07 6.36 6.36 Total: -1.00 -33.87 422.19 -9.58 -43.45 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: -8.11 Total: 12.62 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -2.62 Total: 1.34 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: -0.36 Total: -56.24 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: 0.17 Total: -23.57 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -33.87 -9.58 -43.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714447124.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.258 kcal (2) G-P(sol) polarization free energy of solvation -33.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds