Wall clock time and date at job start Wed Apr 1 2020 05:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38361 * 119.92410 * 2 1 4 4 C 1.38359 * 120.29071 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.92546 * 179.97438 * 4 3 2 6 6 C 1.37961 * 120.14583 * 359.96731 * 4 3 2 7 7 C 1.39577 * 119.84990 * 0.02562 * 6 4 3 8 8 C 1.47846 * 120.13867 * 179.97438 * 7 6 4 9 9 O 1.21546 * 120.00495 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99692 * 180.02562 * 8 7 6 11 11 C 1.46494 * 120.00059 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.47501 * 179.97438 * 11 10 8 13 13 H 1.08999 * 109.47268 * 305.00906 * 12 11 10 14 14 C 1.53009 * 109.46678 * 65.00107 * 12 11 10 15 15 C 1.52993 * 109.47435 * 185.00167 * 12 11 10 16 16 N 1.46905 * 109.47039 * 175.00361 * 15 12 11 17 17 C 1.46901 * 110.99870 * 180.02562 * 16 15 12 18 18 C 1.50697 * 109.46943 * 180.02562 * 17 16 15 19 19 O 1.21292 * 120.00024 * 359.97438 * 18 17 16 20 20 N 1.34776 * 119.99767 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99759 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00171 * 359.97438 * 21 20 18 23 23 C 1.38951 * 120.00074 * 179.97438 * 21 20 18 24 24 N 1.31416 * 119.99768 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00310 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47191 * 60.00175 * 25 23 21 27 27 H 1.48495 * 109.47229 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47299 * 300.00478 * 25 23 21 29 29 C 1.37959 * 119.92957 * 180.24436 * 2 1 3 30 30 H 1.08996 * 109.47039 * 90.01065 * 1 2 3 31 31 H 1.09004 * 109.46727 * 210.00705 * 1 2 3 32 32 H 1.09000 * 109.47281 * 330.00731 * 1 2 3 33 33 H 1.08003 * 119.85430 * 359.96518 * 3 2 1 34 34 H 1.09001 * 109.46818 * 269.97131 * 5 4 3 35 35 H 1.08998 * 109.47527 * 29.97516 * 5 4 3 36 36 H 1.09000 * 109.46874 * 149.97703 * 5 4 3 37 37 H 1.08002 * 120.07486 * 180.02562 * 6 4 3 38 38 H 0.97000 * 119.99981 * 0.02562 * 10 8 7 39 39 H 1.09001 * 109.47033 * 60.00141 * 11 10 8 40 40 H 1.09003 * 109.47588 * 300.00243 * 11 10 8 41 41 H 1.08995 * 109.47462 * 300.00645 * 14 12 11 42 42 H 1.08999 * 109.46618 * 60.00401 * 14 12 11 43 43 H 1.08995 * 109.46725 * 179.97438 * 14 12 11 44 44 H 1.09001 * 109.47393 * 55.00642 * 15 12 11 45 45 H 1.08998 * 109.47408 * 295.00288 * 15 12 11 46 46 H 1.00901 * 110.99869 * 56.04956 * 16 15 12 47 47 H 1.09004 * 109.47031 * 299.99620 * 17 16 15 48 48 H 1.08995 * 109.47111 * 59.99900 * 17 16 15 49 49 H 0.96997 * 120.00713 * 359.97438 * 20 18 17 50 50 H 0.96999 * 119.99907 * 179.97438 * 24 23 21 51 51 H 1.08001 * 120.07128 * 0.02693 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1992 0.0000 4 6 3.5808 1.2080 -0.0005 5 6 4.3242 2.5189 -0.0011 6 6 4.2813 0.0194 -0.0004 7 6 3.5910 -1.1937 -0.0002 8 6 4.3353 -2.4712 -0.0007 9 8 5.5507 -2.4666 -0.0016 10 7 3.6659 -3.6410 -0.0010 11 6 4.4032 -4.9069 -0.0020 12 6 3.4135 -6.0737 -0.0016 13 1 2.7295 -5.9697 0.8406 14 6 2.6177 -6.0678 -1.3085 15 6 4.1795 -7.3922 0.1231 16 7 3.2257 -8.5030 0.2438 17 6 3.9270 -9.7880 0.3664 18 6 2.9184 -10.9012 0.4872 19 8 1.7321 -10.6489 0.4731 20 7 3.3346 -12.1770 0.6120 21 6 2.4171 -13.1896 0.7225 22 1 1.3608 -12.9650 0.7099 23 6 2.8461 -14.5050 0.8506 24 7 4.1315 -14.7783 0.8664 25 14 1.5960 -15.8847 1.0018 26 1 0.7327 -15.9051 -0.2064 27 1 2.3049 -17.1836 1.1261 28 1 0.7564 -15.6622 2.2063 29 6 2.1953 -1.1956 -0.0051 30 1 -0.3633 -0.0002 -1.0276 31 1 -0.3633 -0.8900 0.5140 32 1 -0.3634 0.8900 0.5137 33 1 1.6536 2.1324 -0.0006 34 1 4.5035 2.8344 -1.0289 35 1 3.7294 3.2742 0.5124 36 1 5.2776 2.3960 0.5127 37 1 5.3613 0.0277 -0.0004 38 1 2.6959 -3.6448 -0.0014 39 1 5.0304 -4.9627 0.8877 40 1 5.0298 -4.9618 -0.8923 41 1 2.0720 -5.1285 -1.3974 42 1 3.3017 -6.1718 -2.1507 43 1 1.9130 -6.8993 -1.3084 44 1 4.8147 -7.3610 1.0083 45 1 4.7975 -7.5386 -0.7627 46 1 2.5833 -8.5142 -0.5342 47 1 4.5436 -9.9512 -0.5176 48 1 4.5603 -9.7731 1.2534 49 1 4.2833 -12.3788 0.6237 50 1 4.4310 -15.6965 0.9562 51 1 1.6554 -2.1309 -0.0095 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714447124.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:32 Heat of formation + Delta-G solvation = -91.848770 kcal Electronic energy + Delta-G solvation = -28605.231010 eV Core-core repulsion = 24502.401368 eV Total energy + Delta-G solvation = -4102.829642 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.38593 -40.19763 -39.75578 -38.31621 -36.22783 -35.71789 -34.52154 -33.75401 -33.25043 -32.64948 -28.84769 -28.36755 -27.91926 -27.43953 -26.60419 -25.09861 -23.81771 -21.74364 -21.50861 -21.21088 -20.78531 -19.90199 -18.49864 -17.96590 -17.39748 -17.11509 -16.97828 -16.59558 -16.40464 -16.06861 -16.00379 -15.62410 -15.45073 -15.25503 -14.86747 -14.73708 -14.38672 -14.32466 -14.01006 -13.96742 -13.88734 -13.59857 -13.45788 -13.35749 -13.33195 -13.08404 -12.80595 -12.78717 -12.54370 -12.46193 -12.43076 -12.14098 -12.09590 -11.99618 -11.86937 -11.76971 -11.49678 -11.09738 -10.34603 -10.25429 -10.01585 -9.77173 -9.59552 -9.32857 -8.46252 -5.95304 -0.17690 0.33305 1.40330 1.42295 1.53290 1.78170 2.03892 2.05427 2.29950 2.80136 2.94491 3.21060 3.52662 3.59488 3.76058 3.82623 3.88668 3.92348 3.96856 4.13248 4.31441 4.32949 4.36585 4.46661 4.50856 4.52258 4.56137 4.58213 4.64878 4.73206 4.78494 4.80980 4.85265 4.88045 4.93035 4.98203 4.99470 5.16665 5.21096 5.25586 5.32424 5.34210 5.40798 5.41338 5.51059 5.56860 5.88312 5.94087 6.09677 6.40902 6.44614 6.60143 7.10169 7.12479 7.56267 8.11251 8.70865 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.027260 B = 0.001379 C = 0.001324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.901434 B =20304.627959 C =21141.667223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.091 4.091 3 C -0.098 4.098 4 C -0.094 4.094 5 C -0.115 4.115 6 C -0.089 4.089 7 C -0.143 4.143 8 C 0.554 3.446 9 O -0.582 6.582 10 N -0.709 5.709 11 C 0.131 3.869 12 C -0.089 4.089 13 H 0.087 0.913 14 C -0.151 4.151 15 C 0.066 3.934 16 N -0.680 5.680 17 C 0.063 3.937 18 C 0.437 3.563 19 O -0.623 6.623 20 N -0.573 5.573 21 C -0.336 4.336 22 H 0.080 0.920 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.993 3.007 26 H -0.271 1.271 27 H -0.271 1.271 28 H -0.272 1.272 29 C -0.096 4.096 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.151 0.849 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.121 0.879 38 H 0.412 0.588 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.079 0.921 45 H 0.042 0.958 46 H 0.346 0.654 47 H 0.066 0.934 48 H 0.103 0.897 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.986 33.957 -3.632 34.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.091 4.091 3 C -0.116 4.116 4 C -0.094 4.094 5 C -0.171 4.171 6 C -0.108 4.108 7 C -0.146 4.146 8 C 0.343 3.657 9 O -0.463 6.463 10 N -0.361 5.361 11 C 0.007 3.993 12 C -0.108 4.108 13 H 0.105 0.895 14 C -0.208 4.208 15 C -0.063 4.063 16 N -0.314 5.314 17 C -0.069 4.069 18 C 0.225 3.775 19 O -0.509 6.509 20 N -0.210 5.210 21 C -0.466 4.466 22 H 0.098 0.902 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.196 1.196 27 H -0.195 1.195 28 H -0.197 1.197 29 C -0.115 4.115 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.169 0.831 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.139 0.861 38 H 0.251 0.749 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.098 0.902 45 H 0.060 0.940 46 H 0.165 0.835 47 H 0.084 0.916 48 H 0.121 0.879 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.888 33.968 -2.948 34.147 hybrid contribution 0.237 -1.396 -0.751 1.603 sum -1.651 32.571 -3.699 32.822 Atomic orbital electron populations 1.20878 0.88705 1.04117 1.03469 1.20195 0.97774 0.92407 0.98756 1.21503 0.93299 0.98928 0.97871 1.20161 0.94438 0.95552 0.99267 1.20861 1.00138 0.92759 1.03344 1.21211 1.00305 0.91344 0.97924 1.19875 0.94483 0.92665 1.07625 1.18629 0.86844 0.84702 0.75556 1.90746 1.15300 1.88249 1.52024 1.45815 1.11130 1.05005 1.74178 1.21300 0.94228 0.81573 1.02224 1.21213 0.97095 0.92334 1.00130 0.89459 1.21890 1.00180 1.02593 0.96155 1.21956 0.93724 0.89270 1.01365 1.60086 1.19035 1.01299 1.50974 1.21538 0.94274 0.88042 1.03048 1.20871 0.90113 0.84234 0.82319 1.90482 1.19531 1.83886 1.57026 1.41931 1.09494 1.05179 1.64392 1.19655 0.90733 0.86731 1.49478 0.90225 1.26044 0.98684 1.00217 0.96236 1.69671 1.14669 1.21821 1.49954 0.84986 0.77643 0.76738 0.78953 1.19608 1.19521 1.19729 1.21390 0.91929 0.99500 0.98651 0.90034 0.90622 0.90110 0.83114 0.90145 0.89654 0.91410 0.86107 0.74933 0.91707 0.91574 0.91038 0.92407 0.92575 0.90231 0.94017 0.83453 0.91629 0.87857 0.76987 0.91298 0.83858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.69 10.01 71.24 0.71 0.03 16 2 C -0.09 -1.01 5.87 -19.90 -0.12 -1.13 16 3 C -0.10 -1.06 9.34 22.33 0.21 -0.85 16 4 C -0.09 -1.27 5.87 -19.90 -0.12 -1.39 16 5 C -0.11 -0.97 10.01 71.24 0.71 -0.26 16 6 C -0.09 -1.66 9.24 22.53 0.21 -1.45 16 7 C -0.14 -2.71 5.87 -20.09 -0.12 -2.83 16 8 C 0.55 12.67 7.77 86.79 0.67 13.35 16 9 O -0.58 -17.93 16.35 -3.86 -0.06 -17.99 16 10 N -0.71 -12.35 5.24 -465.97 -2.44 -14.79 16 11 C 0.13 2.43 5.06 86.38 0.44 2.86 16 12 C -0.09 -1.60 2.63 -10.79 -0.03 -1.63 16 13 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 14 C -0.15 -2.51 8.84 71.99 0.64 -1.88 16 15 C 0.07 1.45 5.14 86.30 0.44 1.90 16 16 N -0.68 -20.65 6.12 -517.93 -3.17 -23.83 16 17 C 0.06 2.16 6.17 85.56 0.53 2.68 16 18 C 0.44 20.78 7.82 87.66 0.69 21.46 16 19 O -0.62 -34.32 15.78 -3.07 -0.05 -34.37 16 20 N -0.57 -29.48 5.29 -306.99 -1.62 -31.10 16 21 C -0.34 -19.15 9.68 84.04 0.81 -18.34 16 22 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 23 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 24 N -0.92 -49.77 13.05 21.66 0.28 -49.48 16 25 Si 0.99 42.85 29.55 68.60 2.03 44.88 16 26 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 27 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 28 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 29 C -0.10 -1.29 9.19 22.52 0.21 -1.09 16 30 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.07 0.39 8.09 -2.39 -0.02 0.37 16 32 H 0.08 0.31 8.08 -2.39 -0.02 0.29 16 33 H 0.15 0.82 8.06 -2.91 -0.02 0.80 16 34 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.08 0.43 8.08 -2.39 -0.02 0.41 16 36 H 0.07 0.60 8.08 -2.39 -0.02 0.58 16 37 H 0.12 2.49 7.65 -2.91 -0.02 2.47 16 38 H 0.41 5.02 5.69 -92.71 -0.53 4.49 16 39 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.07 0.92 7.18 -2.39 -0.02 0.90 16 42 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.06 1.10 6.68 -2.39 -0.02 1.09 16 44 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.35 10.90 6.68 -89.69 -0.60 10.30 16 47 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 48 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 49 H 0.40 19.38 7.90 -92.71 -0.73 18.65 16 50 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 51 H 0.14 1.26 6.41 -2.91 -0.02 1.24 16 Total: -1.00 -74.42 422.19 0.42 -73.99 By element: Atomic # 1 Polarization: 42.30 SS G_CDS: -0.90 Total: 41.40 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: 6.36 Total: 11.28 kcal Atomic # 7 Polarization: -112.24 SS G_CDS: -6.95 Total: -119.19 kcal Atomic # 8 Polarization: -52.25 SS G_CDS: -0.11 Total: -52.36 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -74.42 0.42 -73.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714447124.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.854 kcal (2) G-P(sol) polarization free energy of solvation -74.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds