Wall clock time and date at job start Wed Apr 1 2020 04:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38364 * 119.92765 * 2 1 4 4 C 1.38360 * 120.29443 * 179.97438 * 3 2 1 5 5 C 1.50695 * 119.92839 * 179.97438 * 4 3 2 6 6 C 1.37959 * 120.14500 * 359.97438 * 4 3 2 7 7 C 1.39577 * 119.84888 * 0.02562 * 6 4 3 8 8 C 1.47851 * 120.14348 * 179.97438 * 7 6 4 9 9 O 1.21553 * 119.99877 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00199 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27782 * 10 8 7 12 12 C 1.52996 * 109.47059 * 179.72339 * 11 10 8 13 13 C 1.53003 * 109.47301 * 179.97438 * 12 11 10 14 14 H 1.08996 * 109.46851 * 55.00107 * 13 12 11 15 15 C 1.53000 * 109.47041 * 174.99629 * 13 12 11 16 16 N 1.46894 * 109.46965 * 294.99871 * 13 12 11 17 17 C 1.46905 * 110.99877 * 154.99834 * 16 13 12 18 18 C 1.50696 * 109.46878 * 179.97438 * 17 16 13 19 19 O 1.21285 * 120.00374 * 359.97438 * 18 17 16 20 20 N 1.34787 * 119.99880 * 180.02562 * 18 17 16 21 21 C 1.37091 * 120.00068 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00170 * 359.97438 * 21 20 18 23 23 C 1.38948 * 119.99901 * 179.97438 * 21 20 18 24 24 N 1.31416 * 120.00161 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99845 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47515 * 59.99836 * 25 23 21 27 27 H 1.48509 * 109.47142 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47307 * 299.99584 * 25 23 21 29 29 C 1.37959 * 119.92784 * 180.25592 * 2 1 3 30 30 H 1.09001 * 109.47301 * 90.00003 * 1 2 3 31 31 H 1.09003 * 109.47366 * 209.99879 * 1 2 3 32 32 H 1.09006 * 109.46974 * 330.00144 * 1 2 3 33 33 H 1.07999 * 119.85359 * 359.97438 * 3 2 1 34 34 H 1.09001 * 109.47665 * 269.98200 * 5 4 3 35 35 H 1.08999 * 109.47020 * 29.98516 * 5 4 3 36 36 H 1.09007 * 109.46954 * 149.97833 * 5 4 3 37 37 H 1.07997 * 120.07790 * 180.02562 * 6 4 3 38 38 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 39 39 H 1.09004 * 109.46963 * 299.72135 * 11 10 8 40 40 H 1.08994 * 109.47567 * 59.72287 * 11 10 8 41 41 H 1.09004 * 109.47066 * 299.99732 * 12 11 10 42 42 H 1.09000 * 109.47665 * 59.99541 * 12 11 10 43 43 H 1.09003 * 109.47155 * 60.00174 * 15 13 12 44 44 H 1.09003 * 109.47089 * 180.02562 * 15 13 12 45 45 H 1.09000 * 109.47427 * 299.99741 * 15 13 12 46 46 H 1.00900 * 111.00007 * 31.04473 * 16 13 12 47 47 H 1.09001 * 109.47123 * 299.99875 * 17 16 13 48 48 H 1.08997 * 109.47075 * 59.99925 * 17 16 13 49 49 H 0.97002 * 119.99782 * 359.97438 * 20 18 17 50 50 H 0.96997 * 119.99708 * 179.97438 * 24 23 21 51 51 H 1.07999 * 120.07467 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1991 0.0000 4 6 3.5808 1.2080 0.0005 5 6 4.3243 2.5188 -0.0001 6 6 4.2813 0.0194 0.0016 7 6 3.5910 -1.1937 0.0016 8 6 4.3351 -2.4713 0.0022 9 8 5.5506 -2.4667 0.0031 10 7 3.6657 -3.6411 0.0017 11 6 4.4031 -4.9070 0.0084 12 6 3.4133 -6.0736 0.0132 13 6 4.1833 -7.3957 0.0196 14 1 4.8751 -7.4092 0.8618 15 6 3.1982 -8.5591 0.1502 16 7 4.9361 -7.5300 -1.2347 17 6 6.0980 -8.4116 -1.0595 18 6 6.8435 -8.5253 -2.3642 19 8 6.4458 -7.9309 -3.3438 20 7 7.9517 -9.2885 -2.4429 21 6 8.6302 -9.3915 -3.6297 22 1 8.2765 -8.8615 -4.5018 23 6 9.7729 -10.1778 -3.7107 24 7 10.2036 -10.8223 -2.6495 25 14 10.6969 -10.3188 -5.3280 26 1 11.1567 -8.9728 -5.7544 27 1 11.8712 -11.2105 -5.1511 28 1 9.7972 -10.8859 -6.3644 29 6 2.1952 -1.1956 -0.0053 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6537 2.1324 -0.0004 34 1 4.5043 2.8341 -1.0278 35 1 3.7291 3.2743 0.5128 36 1 5.2774 2.3961 0.5146 37 1 5.3612 0.0276 0.0024 38 1 2.6957 -3.6447 0.0013 39 1 5.0306 -4.9666 -0.8809 40 1 5.0292 -4.9580 0.8990 41 1 2.7857 -6.0140 0.9025 42 1 2.7871 -6.0226 -0.8775 43 1 2.5063 -8.5456 -0.6920 44 1 3.7468 -9.5010 0.1552 45 1 2.6397 -8.4595 1.0809 46 1 5.2171 -6.6269 -1.5861 47 1 6.7583 -7.9957 -0.2984 48 1 5.7605 -9.3998 -0.7470 49 1 8.2696 -9.7642 -1.6596 50 1 11.0011 -11.3715 -2.7062 51 1 1.6553 -2.1309 -0.0099 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714498583.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:42 Heat of formation + Delta-G solvation = -66.233379 kcal Electronic energy + Delta-G solvation = -29034.923077 eV Core-core repulsion = 24933.204202 eV Total energy + Delta-G solvation = -4101.718875 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.58048 -39.04193 -38.40402 -37.13791 -34.95652 -33.96836 -33.82889 -32.68542 -31.46243 -31.02042 -29.06265 -27.78580 -27.02357 -26.38732 -24.74674 -23.86500 -22.72400 -21.07445 -20.80394 -20.05453 -19.20474 -17.86735 -17.72916 -16.76660 -16.33643 -16.17128 -15.90668 -15.45735 -15.18936 -14.97305 -14.63984 -14.47250 -14.36017 -13.88289 -13.78608 -13.64029 -13.61892 -13.52786 -13.39087 -13.04803 -12.95800 -12.48375 -12.39143 -12.15852 -11.97370 -11.92603 -11.84589 -11.67112 -11.54229 -11.47031 -11.29003 -11.22783 -11.01438 -10.76489 -10.40718 -10.17241 -10.10858 -9.45812 -9.37895 -9.12752 -9.01482 -8.40350 -8.03923 -7.91476 -6.37387 -3.78006 0.50749 0.92823 2.58976 2.88066 3.23689 3.28763 3.33592 3.49341 3.95614 4.12367 4.26895 4.30286 4.31975 4.35084 4.61427 4.69036 4.81387 4.86482 4.90498 4.94809 5.01232 5.11763 5.15205 5.15890 5.23277 5.29194 5.34117 5.39668 5.41795 5.42671 5.55636 5.62111 5.71179 5.71769 5.82278 5.84919 5.90323 5.93770 6.02926 6.04709 6.07588 6.14062 6.18696 6.28099 6.37809 6.50725 7.23780 7.27427 7.59229 7.69336 7.99249 8.10596 8.65975 9.22205 9.58899 10.10633 10.80339 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013149 B = 0.001765 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.893815 B =15861.401489 C =17319.680999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.090 4.090 3 C -0.098 4.098 4 C -0.090 4.090 5 C -0.115 4.115 6 C -0.066 4.066 7 C -0.123 4.123 8 C 0.555 3.445 9 O -0.531 6.531 10 N -0.723 5.723 11 C 0.112 3.888 12 C -0.133 4.133 13 C 0.086 3.914 14 H 0.045 0.955 15 C -0.139 4.139 16 N -0.666 5.666 17 C 0.050 3.950 18 C 0.441 3.559 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 C -0.094 4.094 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.126 0.874 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.136 0.864 38 H 0.399 0.601 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.057 0.943 45 H 0.052 0.948 46 H 0.349 0.651 47 H 0.044 0.956 48 H 0.086 0.914 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.292 21.020 12.174 31.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.090 4.090 3 C -0.116 4.116 4 C -0.090 4.090 5 C -0.172 4.172 6 C -0.085 4.085 7 C -0.126 4.126 8 C 0.342 3.658 9 O -0.408 6.408 10 N -0.375 5.375 11 C -0.011 4.011 12 C -0.171 4.171 13 C -0.025 4.025 14 H 0.063 0.937 15 C -0.197 4.197 16 N -0.301 5.301 17 C -0.083 4.083 18 C 0.226 3.774 19 O -0.467 6.467 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.113 4.113 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.144 0.856 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.154 0.846 38 H 0.234 0.766 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.171 0.829 47 H 0.062 0.938 48 H 0.104 0.896 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -19.891 20.770 11.283 30.893 hybrid contribution 0.882 -0.011 0.221 0.910 sum -19.009 20.759 11.504 30.407 Atomic orbital electron populations 1.20809 0.90609 1.03047 1.02679 1.19836 0.96365 0.92755 1.00087 1.21129 0.93536 0.97747 0.99219 1.19908 0.93774 0.95423 0.99881 1.20815 1.00180 0.93463 1.02736 1.21180 1.00805 0.90352 0.96179 1.19928 0.93576 0.93581 1.05558 1.18297 0.87308 0.83697 0.76500 1.90815 1.13389 1.87513 1.49089 1.45867 1.10319 1.05707 1.75644 1.21518 0.94978 0.81660 1.02964 1.21987 0.98437 0.93154 1.03489 1.21451 0.95403 0.93906 0.91694 0.93700 1.21785 0.98923 0.97906 1.01071 1.60208 1.24705 1.18399 1.26793 1.21725 0.91480 0.98499 0.96579 1.19820 0.83297 0.84479 0.89767 1.90519 1.68614 1.49558 1.38035 1.41855 1.23050 1.42375 1.12782 1.19654 1.06146 1.27187 0.89868 0.87997 1.25258 0.97389 0.96452 0.98875 1.69608 1.24839 1.30953 1.28976 0.85916 0.78583 0.78265 0.81434 1.19921 1.20998 1.19916 1.21153 0.92779 0.98045 0.99278 0.90865 0.91287 0.91348 0.85632 0.90821 0.91352 0.91134 0.84587 0.76561 0.90697 0.91262 0.90619 0.90000 0.91845 0.92375 0.92897 0.82932 0.93829 0.89580 0.77469 0.91867 0.85683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.50 10.01 36.00 0.36 -0.14 16 2 C -0.09 -0.63 5.87 -104.68 -0.61 -1.24 16 3 C -0.10 -0.69 9.34 -39.49 -0.37 -1.06 16 4 C -0.09 -0.73 5.87 -104.68 -0.61 -1.34 16 5 C -0.12 -0.67 10.01 36.00 0.36 -0.31 16 6 C -0.07 -0.68 9.24 -39.18 -0.36 -1.04 16 7 C -0.12 -1.30 5.87 -104.96 -0.62 -1.91 16 8 C 0.55 7.10 7.77 -12.33 -0.10 7.01 16 9 O -0.53 -9.02 16.35 5.32 0.09 -8.93 16 10 N -0.72 -7.32 5.51 -61.25 -0.34 -7.66 16 11 C 0.11 1.27 5.50 -4.04 -0.02 1.25 16 12 C -0.13 -1.25 4.92 -26.73 -0.13 -1.38 16 13 C 0.09 1.02 2.65 -67.71 -0.18 0.84 16 14 H 0.05 0.52 7.80 -51.93 -0.40 0.12 16 15 C -0.14 -1.51 9.41 37.16 0.35 -1.16 16 16 N -0.67 -10.85 5.93 -107.99 -0.64 -11.49 16 17 C 0.05 0.91 5.97 -4.97 -0.03 0.88 16 18 C 0.44 10.75 7.82 -10.98 -0.09 10.66 16 19 O -0.58 -16.32 15.78 5.55 0.09 -16.23 16 20 N -0.56 -14.71 5.29 -10.97 -0.06 -14.76 16 21 C -0.30 -8.56 9.68 -14.94 -0.14 -8.70 16 22 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -25.03 13.05 55.50 0.72 -24.30 16 25 Si 0.93 21.56 29.55 -169.99 -5.02 16.54 16 26 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 29 C -0.09 -0.74 9.19 -39.18 -0.36 -1.10 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 32 H 0.07 0.24 8.08 -51.93 -0.42 -0.18 16 33 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 36 H 0.07 0.40 8.08 -51.92 -0.42 -0.02 16 37 H 0.14 1.47 7.65 -52.49 -0.40 1.07 16 38 H 0.40 2.77 6.51 -40.82 -0.27 2.51 16 39 H 0.07 1.04 6.43 -51.93 -0.33 0.71 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.68 7.45 -51.93 -0.39 0.30 16 45 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.35 6.03 6.17 -39.29 -0.24 5.79 16 47 H 0.04 0.73 8.06 -51.93 -0.42 0.31 16 48 H 0.09 1.44 7.44 -51.93 -0.39 1.05 16 49 H 0.39 9.76 7.90 -40.82 -0.32 9.43 16 50 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 51 H 0.13 0.68 6.41 -52.49 -0.34 0.35 16 LS Contribution 422.07 15.07 6.36 6.36 Total: -1.00 -35.18 422.07 -9.52 -44.70 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: -8.07 Total: 14.03 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -2.65 Total: 1.75 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: -0.31 Total: -58.22 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: 0.17 Total: -25.16 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -35.18 -9.52 -44.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714498583.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.532 kcal (2) G-P(sol) polarization free energy of solvation -35.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds