Wall clock time and date at job start Wed Apr 1 2020 04:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38364 * 119.92765 * 2 1 4 4 C 1.38360 * 120.29443 * 179.97438 * 3 2 1 5 5 C 1.50695 * 119.92839 * 179.97438 * 4 3 2 6 6 C 1.37959 * 120.14500 * 359.97438 * 4 3 2 7 7 C 1.39577 * 119.84888 * 0.02562 * 6 4 3 8 8 C 1.47851 * 120.14348 * 179.97438 * 7 6 4 9 9 O 1.21553 * 119.99877 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00199 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27782 * 10 8 7 12 12 C 1.52996 * 109.47059 * 179.72339 * 11 10 8 13 13 C 1.53003 * 109.47301 * 179.97438 * 12 11 10 14 14 H 1.08996 * 109.46851 * 55.00107 * 13 12 11 15 15 C 1.53000 * 109.47041 * 174.99629 * 13 12 11 16 16 N 1.46894 * 109.46965 * 294.99871 * 13 12 11 17 17 C 1.46905 * 110.99877 * 154.99834 * 16 13 12 18 18 C 1.50696 * 109.46878 * 179.97438 * 17 16 13 19 19 O 1.21285 * 120.00374 * 359.97438 * 18 17 16 20 20 N 1.34787 * 119.99880 * 180.02562 * 18 17 16 21 21 C 1.37091 * 120.00068 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00170 * 359.97438 * 21 20 18 23 23 C 1.38948 * 119.99901 * 179.97438 * 21 20 18 24 24 N 1.31416 * 120.00161 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99845 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47515 * 59.99836 * 25 23 21 27 27 H 1.48509 * 109.47142 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47307 * 299.99584 * 25 23 21 29 29 C 1.37959 * 119.92784 * 180.25592 * 2 1 3 30 30 H 1.09001 * 109.47301 * 90.00003 * 1 2 3 31 31 H 1.09003 * 109.47366 * 209.99879 * 1 2 3 32 32 H 1.09006 * 109.46974 * 330.00144 * 1 2 3 33 33 H 1.07999 * 119.85359 * 359.97438 * 3 2 1 34 34 H 1.09001 * 109.47665 * 269.98200 * 5 4 3 35 35 H 1.08999 * 109.47020 * 29.98516 * 5 4 3 36 36 H 1.09007 * 109.46954 * 149.97833 * 5 4 3 37 37 H 1.07997 * 120.07790 * 180.02562 * 6 4 3 38 38 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 39 39 H 1.09004 * 109.46963 * 299.72135 * 11 10 8 40 40 H 1.08994 * 109.47567 * 59.72287 * 11 10 8 41 41 H 1.09004 * 109.47066 * 299.99732 * 12 11 10 42 42 H 1.09000 * 109.47665 * 59.99541 * 12 11 10 43 43 H 1.09003 * 109.47155 * 60.00174 * 15 13 12 44 44 H 1.09003 * 109.47089 * 180.02562 * 15 13 12 45 45 H 1.09000 * 109.47427 * 299.99741 * 15 13 12 46 46 H 1.00900 * 111.00007 * 31.04473 * 16 13 12 47 47 H 1.09001 * 109.47123 * 299.99875 * 17 16 13 48 48 H 1.08997 * 109.47075 * 59.99925 * 17 16 13 49 49 H 0.97002 * 119.99782 * 359.97438 * 20 18 17 50 50 H 0.96997 * 119.99708 * 179.97438 * 24 23 21 51 51 H 1.07999 * 120.07467 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1991 0.0000 4 6 3.5808 1.2080 0.0005 5 6 4.3243 2.5188 -0.0001 6 6 4.2813 0.0194 0.0016 7 6 3.5910 -1.1937 0.0016 8 6 4.3351 -2.4713 0.0022 9 8 5.5506 -2.4667 0.0031 10 7 3.6657 -3.6411 0.0017 11 6 4.4031 -4.9070 0.0084 12 6 3.4133 -6.0736 0.0132 13 6 4.1833 -7.3957 0.0196 14 1 4.8751 -7.4092 0.8618 15 6 3.1982 -8.5591 0.1502 16 7 4.9361 -7.5300 -1.2347 17 6 6.0980 -8.4116 -1.0595 18 6 6.8435 -8.5253 -2.3642 19 8 6.4458 -7.9309 -3.3438 20 7 7.9517 -9.2885 -2.4429 21 6 8.6302 -9.3915 -3.6297 22 1 8.2765 -8.8615 -4.5018 23 6 9.7729 -10.1778 -3.7107 24 7 10.2036 -10.8223 -2.6495 25 14 10.6969 -10.3188 -5.3280 26 1 11.1567 -8.9728 -5.7544 27 1 11.8712 -11.2105 -5.1511 28 1 9.7972 -10.8859 -6.3644 29 6 2.1952 -1.1956 -0.0053 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6537 2.1324 -0.0004 34 1 4.5043 2.8341 -1.0278 35 1 3.7291 3.2743 0.5128 36 1 5.2774 2.3961 0.5146 37 1 5.3612 0.0276 0.0024 38 1 2.6957 -3.6447 0.0013 39 1 5.0306 -4.9666 -0.8809 40 1 5.0292 -4.9580 0.8990 41 1 2.7857 -6.0140 0.9025 42 1 2.7871 -6.0226 -0.8775 43 1 2.5063 -8.5456 -0.6920 44 1 3.7468 -9.5010 0.1552 45 1 2.6397 -8.4595 1.0809 46 1 5.2171 -6.6269 -1.5861 47 1 6.7583 -7.9957 -0.2984 48 1 5.7605 -9.3998 -0.7470 49 1 8.2696 -9.7642 -1.6596 50 1 11.0011 -11.3715 -2.7062 51 1 1.6553 -2.1309 -0.0099 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714498583.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:40 Heat of formation + Delta-G solvation = -91.353611 kcal Electronic energy + Delta-G solvation = -29036.012372 eV Core-core repulsion = 24933.204202 eV Total energy + Delta-G solvation = -4102.808170 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.40280 -40.27494 -39.74149 -38.39445 -36.14409 -35.81422 -34.48324 -33.49375 -33.26756 -32.40326 -29.93924 -28.24358 -28.08190 -27.55754 -26.00646 -25.24800 -23.59825 -21.77499 -21.59848 -21.19347 -20.90013 -19.93731 -18.54044 -17.92058 -17.49346 -17.01941 -16.98948 -16.81881 -16.45517 -16.16591 -16.02090 -15.65050 -15.48137 -15.21712 -14.95165 -14.59338 -14.43337 -14.30424 -14.08362 -14.00749 -13.91401 -13.51875 -13.36592 -13.34045 -13.16822 -12.88265 -12.80760 -12.61592 -12.56855 -12.49100 -12.45254 -12.28125 -12.21808 -12.12351 -12.00929 -11.77235 -11.52401 -11.10609 -10.37999 -10.31115 -10.03899 -9.79624 -9.60987 -9.34248 -8.48327 -5.97396 -0.19966 0.31806 1.38177 1.39613 1.51026 1.74632 2.00803 2.02807 2.27747 2.77934 2.91615 3.18425 3.48613 3.56575 3.71780 3.80203 3.82024 3.94423 4.06775 4.12399 4.28511 4.30280 4.34507 4.42075 4.46783 4.50077 4.53173 4.59434 4.64147 4.67083 4.78757 4.83488 4.89724 4.94792 4.96626 4.99495 5.02592 5.15274 5.17611 5.24021 5.30279 5.34031 5.38544 5.47311 5.49793 5.55305 5.89688 5.93034 6.11708 6.38335 6.41436 6.58020 7.08466 7.10237 7.53529 8.09099 8.68850 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013149 B = 0.001765 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.893815 B =15861.401489 C =17319.680999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.090 4.090 3 C -0.096 4.096 4 C -0.095 4.095 5 C -0.115 4.115 6 C -0.092 4.092 7 C -0.145 4.145 8 C 0.549 3.451 9 O -0.587 6.587 10 N -0.706 5.706 11 C 0.115 3.885 12 C -0.117 4.117 13 C 0.082 3.918 14 H 0.052 0.948 15 C -0.135 4.135 16 N -0.680 5.680 17 C 0.064 3.936 18 C 0.435 3.565 19 O -0.624 6.624 20 N -0.573 5.573 21 C -0.336 4.336 22 H 0.078 0.922 23 C -0.013 4.013 24 N -0.919 5.919 25 Si 0.994 3.006 26 H -0.273 1.273 27 H -0.268 1.268 28 H -0.271 1.271 29 C -0.092 4.092 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.154 0.846 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.065 0.935 37 H 0.115 0.885 38 H 0.417 0.583 39 H 0.042 0.958 40 H 0.062 0.938 41 H 0.111 0.889 42 H 0.084 0.916 43 H 0.056 0.944 44 H 0.046 0.954 45 H 0.083 0.917 46 H 0.340 0.660 47 H 0.061 0.939 48 H 0.106 0.894 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.986 21.551 13.253 34.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.090 4.090 3 C -0.114 4.114 4 C -0.095 4.095 5 C -0.171 4.171 6 C -0.111 4.111 7 C -0.148 4.148 8 C 0.338 3.662 9 O -0.468 6.468 10 N -0.359 5.359 11 C -0.009 4.009 12 C -0.155 4.155 13 C -0.027 4.027 14 H 0.070 0.930 15 C -0.193 4.193 16 N -0.314 5.314 17 C -0.068 4.068 18 C 0.223 3.777 19 O -0.511 6.511 20 N -0.210 5.210 21 C -0.466 4.466 22 H 0.096 0.904 23 C -0.213 4.213 24 N -0.560 5.560 25 Si 0.817 3.183 26 H -0.199 1.199 27 H -0.193 1.193 28 H -0.196 1.196 29 C -0.111 4.111 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.171 0.829 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.084 0.916 37 H 0.133 0.867 38 H 0.256 0.744 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.130 0.870 42 H 0.103 0.897 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.102 0.898 46 H 0.160 0.840 47 H 0.079 0.921 48 H 0.124 0.876 49 H 0.230 0.770 50 H 0.088 0.912 51 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -22.642 21.275 12.401 33.452 hybrid contribution 1.643 -0.120 -0.082 1.649 sum -20.999 21.156 12.319 32.253 Atomic orbital electron populations 1.20877 0.88273 1.04331 1.03501 1.20233 0.97996 0.92228 0.98591 1.21518 0.93049 0.99144 0.97684 1.20159 0.94649 0.95344 0.99368 1.20863 1.00132 0.92874 1.03274 1.21204 1.00151 0.91644 0.98139 1.19864 0.94786 0.92279 1.07871 1.18797 0.86869 0.85061 0.75489 1.90775 1.15794 1.88321 1.51928 1.45711 1.11147 1.04692 1.74315 1.21409 0.95450 0.82967 1.01077 1.21902 0.97675 0.90605 1.05322 1.21638 0.95518 0.95793 0.89771 0.92970 1.21775 0.98479 0.96617 1.02438 1.60267 1.23882 1.17660 1.29638 1.21582 0.91965 1.00278 0.92976 1.20925 0.82614 0.82649 0.91505 1.90482 1.69520 1.50795 1.40286 1.41930 1.23680 1.43066 1.12303 1.19634 1.07815 1.28778 0.90375 0.90426 1.26065 0.97476 0.95433 1.02338 1.69669 1.25144 1.30777 1.30409 0.84977 0.77594 0.78372 0.77308 1.19863 1.19257 1.19602 1.21410 0.91501 0.99784 0.98400 0.90115 0.90176 0.90014 0.82872 0.90332 0.89314 0.91639 0.86728 0.74440 0.93935 0.92014 0.87037 0.89728 0.92473 0.93484 0.89790 0.83979 0.92101 0.87614 0.76969 0.91244 0.83259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 10.01 71.23 0.71 0.13 16 2 C -0.09 -1.04 5.87 -19.90 -0.12 -1.15 16 3 C -0.10 -1.14 9.34 22.33 0.21 -0.93 16 4 C -0.10 -1.50 5.87 -19.90 -0.12 -1.62 16 5 C -0.11 -1.26 10.01 71.23 0.71 -0.54 16 6 C -0.09 -2.03 9.24 22.53 0.21 -1.82 16 7 C -0.14 -3.14 5.87 -20.09 -0.12 -3.25 16 8 C 0.55 14.82 7.77 86.79 0.67 15.49 16 9 O -0.59 -21.71 16.35 -3.88 -0.06 -21.77 16 10 N -0.71 -14.15 5.51 -465.98 -2.57 -16.71 16 11 C 0.12 2.61 5.50 86.38 0.48 3.09 16 12 C -0.12 -1.96 4.92 30.59 0.15 -1.81 16 13 C 0.08 1.81 2.65 44.92 0.12 1.93 16 14 H 0.05 1.11 7.80 -2.39 -0.02 1.09 16 15 C -0.14 -2.59 9.41 71.98 0.68 -1.91 16 16 N -0.68 -22.06 5.93 -495.58 -2.94 -25.00 16 17 C 0.06 2.33 5.97 85.55 0.51 2.85 16 18 C 0.44 21.84 7.82 87.65 0.69 22.52 16 19 O -0.62 -36.33 15.78 -3.04 -0.05 -36.38 16 20 N -0.57 -30.72 5.29 -306.99 -1.62 -32.34 16 21 C -0.34 -19.85 9.68 84.04 0.81 -19.04 16 22 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 23 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 24 N -0.92 -50.93 13.05 21.66 0.28 -50.65 16 25 Si 0.99 44.31 29.55 68.60 2.03 46.34 16 26 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 27 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 28 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 29 C -0.09 -1.32 9.19 22.53 0.21 -1.11 16 30 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.08 0.26 8.09 -2.39 -0.02 0.25 16 32 H 0.08 0.24 8.08 -2.38 -0.02 0.22 16 33 H 0.15 0.93 8.06 -2.91 -0.02 0.91 16 34 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.09 0.60 8.08 -2.39 -0.02 0.58 16 36 H 0.06 0.77 8.08 -2.38 -0.02 0.75 16 37 H 0.11 2.88 7.65 -2.91 -0.02 2.86 16 38 H 0.42 5.05 6.51 -92.71 -0.60 4.44 16 39 H 0.04 1.26 6.43 -2.38 -0.02 1.25 16 40 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 42 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.05 1.00 7.45 -2.39 -0.02 0.99 16 45 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.34 12.13 6.17 -89.69 -0.55 11.57 16 47 H 0.06 2.01 8.06 -2.39 -0.02 1.99 16 48 H 0.11 3.43 7.44 -2.39 -0.02 3.41 16 49 H 0.40 20.14 7.90 -92.71 -0.73 19.40 16 50 H 0.28 14.42 8.31 -92.71 -0.77 13.65 16 51 H 0.15 1.23 6.41 -2.91 -0.02 1.21 16 Total: -1.00 -80.69 422.07 0.42 -80.27 By element: Atomic # 1 Polarization: 44.61 SS G_CDS: -0.93 Total: 43.68 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 6.27 Total: 12.55 kcal Atomic # 7 Polarization: -117.85 SS G_CDS: -6.85 Total: -124.69 kcal Atomic # 8 Polarization: -58.04 SS G_CDS: -0.11 Total: -58.16 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -80.69 0.42 -80.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714498583.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.080 kcal (2) G-P(sol) polarization free energy of solvation -80.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds