Wall clock time and date at job start Wed Apr 1 2020 05:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38383 * 119.93060 * 2 1 4 4 C 1.38339 * 120.29285 * 179.97438 * 3 2 1 5 5 C 1.37977 * 120.14515 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.07046 * 179.97438 * 5 4 3 7 7 C 1.39559 * 119.85504 * 359.97438 * 5 4 3 8 8 C 1.47845 * 120.14550 * 179.97438 * 7 5 4 9 9 O 1.21551 * 119.99627 * 47.87483 * 8 7 5 10 10 N 1.34766 * 120.00067 * 227.88198 * 8 7 5 11 11 C 1.46502 * 119.99916 * 5.48012 * 10 8 7 12 12 C 1.46497 * 120.00040 * 185.48242 * 10 8 7 13 13 H 1.08995 * 109.47207 * 359.97438 * 12 10 8 14 14 C 1.53004 * 109.47317 * 119.99765 * 12 10 8 15 15 C 1.53004 * 109.47130 * 239.99339 * 12 10 8 16 16 N 1.46905 * 109.46594 * 55.00379 * 15 12 10 17 17 C 1.46898 * 110.99604 * 179.97438 * 16 15 12 18 18 C 1.50706 * 109.47196 * 180.02562 * 17 16 15 19 19 O 1.21295 * 119.99526 * 359.97438 * 18 17 16 20 20 N 1.34774 * 120.00193 * 179.97438 * 18 17 16 21 21 C 1.37099 * 119.99711 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99841 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99696 * 179.97438 * 21 20 18 24 24 N 1.31409 * 119.99942 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99759 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47245 * 90.00461 * 25 23 21 27 27 H 1.48504 * 109.47130 * 210.00457 * 25 23 21 28 28 H 1.48502 * 109.47294 * 330.00121 * 25 23 21 29 29 C 1.37940 * 119.92794 * 180.25750 * 2 1 3 30 30 H 1.08999 * 109.47039 * 90.00179 * 1 2 3 31 31 H 1.08998 * 109.47475 * 209.99910 * 1 2 3 32 32 H 1.08999 * 109.46841 * 329.99870 * 1 2 3 33 33 H 1.07996 * 119.84684 * 359.97438 * 3 2 1 34 34 H 1.07999 * 119.92459 * 180.02562 * 4 3 2 35 35 H 1.09003 * 109.47129 * 265.39378 * 6 5 4 36 36 H 1.08996 * 109.46819 * 25.39855 * 6 5 4 37 37 H 1.09003 * 109.46872 * 145.39962 * 6 5 4 38 38 H 1.08997 * 109.47269 * 269.82523 * 11 10 8 39 39 H 1.09007 * 109.46919 * 149.83255 * 11 10 8 40 40 H 1.08996 * 109.47631 * 29.83220 * 11 10 8 41 41 H 1.09000 * 109.47288 * 300.00496 * 14 12 10 42 42 H 1.09006 * 109.46722 * 60.00015 * 14 12 10 43 43 H 1.08997 * 109.47452 * 179.97438 * 14 12 10 44 44 H 1.09009 * 109.47033 * 174.99642 * 15 12 10 45 45 H 1.08996 * 109.47557 * 295.00207 * 15 12 10 46 46 H 1.00896 * 110.99894 * 56.04654 * 16 15 12 47 47 H 1.09003 * 109.47176 * 299.99253 * 17 16 15 48 48 H 1.09001 * 109.47555 * 60.00076 * 17 16 15 49 49 H 0.96998 * 120.00049 * 359.97438 * 20 18 17 50 50 H 0.97005 * 120.00006 * 179.97438 * 24 23 21 51 51 H 1.07999 * 120.07176 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5808 1.2080 0.0005 5 6 4.2812 0.0193 0.0005 6 6 5.7882 0.0307 0.0005 7 6 3.5911 -1.1937 0.0005 8 6 4.3352 -2.4713 0.0000 9 8 5.2515 -2.6412 0.7803 10 7 3.9976 -3.4473 -0.8658 11 6 2.9751 -3.2005 -1.8856 12 6 4.6530 -4.7552 -0.7872 13 1 5.3786 -4.7497 0.0261 14 6 3.6029 -5.8371 -0.5272 15 6 5.3695 -5.0467 -2.1073 16 7 6.2926 -3.9466 -2.4167 17 6 7.0003 -4.1929 -3.6802 18 6 7.9364 -3.0463 -3.9634 19 8 8.0066 -2.1153 -3.1891 20 7 8.6955 -3.0553 -5.0770 21 6 9.5466 -2.0119 -5.3349 22 1 9.6091 -1.1830 -4.6454 23 6 10.3296 -2.0215 -6.4827 24 7 10.2539 -3.0305 -7.3213 25 14 11.4898 -0.6003 -6.8337 26 1 12.8156 -0.8819 -6.2268 27 1 11.6423 -0.4367 -8.3019 28 1 10.9340 0.6478 -6.2518 29 6 2.1952 -1.1954 -0.0054 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6538 2.1324 -0.0004 34 1 4.1136 2.1474 0.0009 35 1 6.1522 -0.0490 -1.0238 36 1 6.1444 0.9618 0.4413 37 1 6.1580 -0.8124 0.5841 38 1 1.9953 -3.4673 -1.4897 39 1 3.1878 -3.8054 -2.7672 40 1 2.9816 -2.1453 -2.1588 41 1 3.0923 -5.6295 0.4132 42 1 2.8776 -5.8425 -1.3409 43 1 4.0905 -6.8103 -0.4692 44 1 5.9302 -5.9773 -2.0186 45 1 4.6346 -5.1401 -2.9068 46 1 6.9440 -3.7978 -1.6607 47 1 7.5724 -5.1175 -3.6019 48 1 6.2770 -4.2806 -4.4908 49 1 8.6396 -3.8001 -5.6960 50 1 10.8003 -3.0370 -8.1228 51 1 1.6552 -2.1307 -0.0100 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714829852.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:40 Heat of formation + Delta-G solvation = -70.712644 kcal Electronic energy + Delta-G solvation = -31129.127041 eV Core-core repulsion = 27027.213931 eV Total energy + Delta-G solvation = -4101.913110 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.58174 -40.19698 -39.66605 -37.90548 -36.19932 -35.58837 -34.66330 -33.38072 -33.13847 -31.40851 -30.08910 -28.97227 -27.86647 -26.71343 -25.93734 -25.01039 -24.43590 -22.85689 -21.50589 -21.04480 -20.05755 -19.84789 -18.34380 -17.95130 -17.35899 -17.00085 -16.66243 -16.54887 -16.46789 -16.09203 -15.75571 -15.46910 -15.20333 -14.95776 -14.87006 -14.75137 -14.41729 -14.10923 -14.06437 -13.97222 -13.70586 -13.54526 -13.40953 -13.28996 -13.20281 -13.08479 -12.83103 -12.79138 -12.73891 -12.58648 -12.46737 -12.41926 -12.30492 -12.14050 -11.95716 -11.77892 -11.52925 -10.74132 -10.37127 -10.03189 -9.87614 -9.54583 -9.40109 -9.30928 -8.48779 -5.97284 0.04466 0.39079 1.35475 1.38986 1.51929 1.71975 2.03907 2.09934 2.27260 2.77421 2.90789 3.18310 3.46947 3.56318 3.84273 3.85690 3.92928 4.06549 4.14720 4.27135 4.28493 4.32032 4.33839 4.45124 4.48880 4.54080 4.63724 4.65120 4.66600 4.70597 4.72736 4.73992 4.81518 4.86427 4.93047 4.97216 5.03980 5.10484 5.16346 5.27852 5.34225 5.36188 5.38520 5.58297 5.60570 5.67817 5.87698 6.00783 6.10110 6.29450 6.43216 6.58855 7.11126 7.20546 7.54443 8.10929 8.68770 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010880 B = 0.002795 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.917550 B =10016.725018 C =11607.994215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.100 4.100 3 C -0.097 4.097 4 C -0.131 4.131 5 C -0.062 4.062 6 C -0.125 4.125 7 C -0.143 4.143 8 C 0.561 3.439 9 O -0.580 6.580 10 N -0.583 5.583 11 C 0.082 3.918 12 C 0.135 3.865 13 H 0.071 0.929 14 C -0.146 4.146 15 C 0.050 3.950 16 N -0.677 5.677 17 C 0.068 3.932 18 C 0.436 3.564 19 O -0.622 6.622 20 N -0.573 5.573 21 C -0.333 4.333 22 H 0.075 0.925 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.991 3.009 26 H -0.271 1.271 27 H -0.268 1.268 28 H -0.274 1.274 29 C -0.083 4.083 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.154 0.846 34 H 0.139 0.861 35 H 0.048 0.952 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.055 0.945 45 H 0.094 0.906 46 H 0.335 0.665 47 H 0.064 0.936 48 H 0.107 0.893 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.675 -2.258 11.238 26.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.100 4.100 3 C -0.115 4.115 4 C -0.149 4.149 5 C -0.063 4.063 6 C -0.182 4.182 7 C -0.146 4.146 8 C 0.351 3.649 9 O -0.461 6.461 10 N -0.313 5.313 11 C -0.060 4.060 12 C 0.031 3.969 13 H 0.090 0.910 14 C -0.204 4.204 15 C -0.079 4.079 16 N -0.309 5.309 17 C -0.065 4.065 18 C 0.224 3.776 19 O -0.508 6.508 20 N -0.211 5.211 21 C -0.462 4.462 22 H 0.093 0.907 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.815 3.185 26 H -0.197 1.197 27 H -0.192 1.192 28 H -0.199 1.199 29 C -0.102 4.102 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.171 0.829 34 H 0.157 0.843 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.073 0.927 45 H 0.112 0.888 46 H 0.152 0.848 47 H 0.082 0.918 48 H 0.125 0.875 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -23.557 -1.422 11.643 26.316 hybrid contribution 2.019 -0.313 -0.415 2.084 sum -21.539 -1.735 11.229 24.352 Atomic orbital electron populations 1.20822 0.88209 1.03970 1.03466 1.20213 0.97982 0.92162 0.99683 1.21534 0.93370 0.99129 0.97435 1.21231 0.95191 0.97122 1.01331 1.20031 0.95816 0.92987 0.97419 1.20898 0.92059 1.03526 1.01669 1.19791 0.94992 0.92383 1.07407 1.18619 0.82194 0.83954 0.80175 1.90672 1.31345 1.81258 1.42874 1.47562 1.39899 1.11965 1.31885 1.21936 0.90601 1.02251 0.91257 1.21196 0.95504 0.82777 0.97400 0.91032 1.22006 0.98332 0.97327 1.02756 1.22485 0.95779 0.91830 0.97848 1.60040 1.23031 1.43847 1.03938 1.21529 0.95916 0.94307 0.94728 1.20938 0.84227 0.89849 0.82610 1.90514 1.71025 1.39546 1.49757 1.41914 1.36758 1.21333 1.21064 1.19620 1.18639 1.00948 1.07038 0.90713 1.26012 0.99469 1.00716 0.94976 1.69666 1.41637 1.31863 1.12923 0.84960 0.78034 0.77708 0.77835 1.19666 1.19233 1.19932 1.21326 0.91101 0.99553 0.98191 0.89929 0.90557 0.90212 0.82872 0.84298 0.93336 0.90259 0.91461 0.89884 0.90006 0.92364 0.92259 0.90168 0.89853 0.92677 0.88772 0.84769 0.91797 0.87492 0.76963 0.91255 0.83641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.01 71.24 0.71 -0.30 16 2 C -0.10 -1.70 5.87 -19.90 -0.12 -1.81 16 3 C -0.10 -1.74 9.69 22.33 0.22 -1.53 16 4 C -0.13 -3.07 9.67 22.23 0.21 -2.86 16 5 C -0.06 -1.86 5.91 -19.61 -0.12 -1.98 16 6 C -0.12 -4.36 9.54 71.24 0.68 -3.68 16 7 C -0.14 -4.07 4.73 -20.09 -0.09 -4.17 16 8 C 0.56 18.03 6.75 86.79 0.59 18.61 16 9 O -0.58 -23.13 14.09 -3.87 -0.05 -23.18 16 10 N -0.58 -14.56 2.48 -826.01 -2.05 -16.61 16 11 C 0.08 1.51 8.12 127.77 1.04 2.55 16 12 C 0.13 3.05 2.88 44.99 0.13 3.18 16 13 H 0.07 2.05 6.91 -2.39 -0.02 2.03 16 14 C -0.15 -2.05 9.19 71.98 0.66 -1.39 16 15 C 0.05 1.14 4.93 86.30 0.43 1.56 16 16 N -0.68 -22.80 5.85 -517.90 -3.03 -25.83 16 17 C 0.07 2.38 6.17 85.56 0.53 2.91 16 18 C 0.44 21.61 7.82 87.66 0.69 22.30 16 19 O -0.62 -36.37 15.78 -3.08 -0.05 -36.42 16 20 N -0.57 -30.25 5.29 -306.98 -1.62 -31.87 16 21 C -0.33 -19.46 9.68 84.04 0.81 -18.65 16 22 H 0.07 4.70 7.16 -2.91 -0.02 4.68 16 23 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 24 N -0.92 -50.34 13.05 21.66 0.28 -50.06 16 25 Si 0.99 43.96 29.55 68.60 2.03 45.98 16 26 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 27 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 28 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 29 C -0.08 -1.70 7.64 22.53 0.17 -1.53 16 30 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.08 0.58 8.08 -2.39 -0.02 0.56 16 32 H 0.08 0.57 8.08 -2.39 -0.02 0.55 16 33 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 34 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 35 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.08 2.34 8.05 -2.39 -0.02 2.32 16 37 H 0.07 2.68 5.62 -2.39 -0.01 2.66 16 38 H 0.08 0.97 7.20 -2.39 -0.02 0.96 16 39 H 0.08 1.37 6.53 -2.38 -0.02 1.35 16 40 H 0.06 1.28 6.53 -2.39 -0.02 1.26 16 41 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.08 0.84 7.67 -2.38 -0.02 0.82 16 43 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 45 H 0.09 1.78 6.88 -2.39 -0.02 1.76 16 46 H 0.33 13.19 8.43 -89.70 -0.76 12.44 16 47 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 48 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 49 H 0.40 19.72 7.90 -92.71 -0.73 18.99 16 50 H 0.28 14.20 8.31 -92.70 -0.77 13.42 16 51 H 0.15 2.24 6.68 -2.91 -0.02 2.22 16 Total: -1.00 -78.73 414.65 1.97 -76.76 By element: Atomic # 1 Polarization: 48.73 SS G_CDS: -0.53 Total: 48.20 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: 7.00 Total: 13.03 kcal Atomic # 7 Polarization: -117.95 SS G_CDS: -6.42 Total: -124.37 kcal Atomic # 8 Polarization: -59.50 SS G_CDS: -0.10 Total: -59.60 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -78.73 1.97 -76.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714829852.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.048 kcal (2) G-P(sol) polarization free energy of solvation -78.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds