Wall clock time and date at job start Wed Apr 1 2020 05:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21292 * 119.99967 * 2 1 4 4 N 1.34778 * 120.00183 * 180.02562 * 2 1 3 5 5 C 1.39953 * 120.00130 * 175.39174 * 4 2 1 6 6 C 1.38998 * 120.00392 * 33.32738 * 5 4 2 7 7 C 1.38207 * 120.22659 * 179.97438 * 6 5 4 8 8 C 1.38021 * 120.22191 * 359.76933 * 7 6 5 9 9 C 1.39583 * 119.99592 * 0.48796 * 8 7 6 10 10 C 1.47859 * 120.10973 * 179.76642 * 9 8 7 11 11 O 1.21553 * 119.99598 * 173.40872 * 10 9 8 12 12 N 1.34774 * 119.99899 * 353.39911 * 10 9 8 13 13 C 1.46504 * 119.99520 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47030 * 180.02562 * 13 12 10 15 15 H 1.08994 * 109.47224 * 295.00326 * 14 13 12 16 16 N 1.46504 * 109.46906 * 54.99866 * 14 13 12 17 17 C 1.36936 * 119.99541 * 204.72349 * 16 14 13 18 18 H 1.07998 * 120.00553 * 0.28222 * 17 16 14 19 19 C 1.38824 * 119.99546 * 180.27512 * 17 16 14 20 20 N 1.31618 * 119.99668 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00123 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47101 * 89.99698 * 21 19 17 23 23 H 1.48498 * 109.47178 * 209.99928 * 21 19 17 24 24 H 1.48504 * 109.47226 * 329.99682 * 21 19 17 25 25 C 1.53001 * 109.47151 * 174.99890 * 14 13 12 26 26 C 1.52997 * 109.46765 * 60.00031 * 25 14 13 27 27 C 1.52998 * 109.46831 * 179.97438 * 25 14 13 28 28 C 1.38600 * 119.99885 * 213.30727 * 5 4 2 29 29 C 1.50701 * 120.11103 * 0.02562 * 28 5 4 30 30 H 1.08996 * 109.47074 * 239.99729 * 1 2 3 31 31 H 1.09002 * 109.47009 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.46905 * 120.00022 * 1 2 3 33 33 H 0.96998 * 119.99675 * 355.38090 * 4 2 1 34 34 H 1.08004 * 119.87908 * 359.97438 * 6 5 4 35 35 H 1.08001 * 119.88636 * 180.02562 * 7 6 5 36 36 H 1.08006 * 120.00276 * 180.26944 * 8 7 6 37 37 H 0.96998 * 120.00303 * 0.02562 * 12 10 9 38 38 H 1.08998 * 109.47532 * 60.00330 * 13 12 10 39 39 H 1.09001 * 109.47142 * 299.99987 * 13 12 10 40 40 H 0.97004 * 120.00340 * 25.00316 * 16 14 13 41 41 H 0.96997 * 119.99604 * 180.02562 * 20 19 17 42 42 H 1.09003 * 109.47110 * 299.99768 * 25 14 13 43 43 H 1.09004 * 109.47023 * 60.00160 * 26 25 14 44 44 H 1.09001 * 109.46447 * 179.97438 * 26 25 14 45 45 H 1.08994 * 109.47283 * 299.99928 * 26 25 14 46 46 H 1.09001 * 109.47294 * 59.99849 * 27 25 14 47 47 H 1.09001 * 109.47199 * 179.97438 * 27 25 14 48 48 H 1.09004 * 109.47520 * 300.00184 * 27 25 14 49 49 H 1.09004 * 109.46691 * 263.06013 * 29 28 5 50 50 H 1.08998 * 109.46651 * 23.05491 * 29 28 5 51 51 H 1.08991 * 109.47164 * 143.05519 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5770 -1.1691 -0.0979 6 6 4.3150 -0.1388 0.4730 7 6 5.6939 -0.1364 0.3801 8 6 6.3478 -1.1595 -0.2762 9 6 5.6156 -2.1959 -0.8576 10 6 6.3133 -3.2905 -1.5656 11 8 5.6863 -4.2516 -1.9666 12 7 7.6442 -3.2224 -1.7667 13 6 8.3353 -4.3068 -2.4688 14 6 9.8280 -3.9841 -2.5620 15 1 9.9706 -3.1007 -3.1843 16 7 10.3567 -3.7267 -1.2202 17 6 11.4737 -2.9507 -1.0617 18 1 11.9624 -2.5247 -1.9255 19 6 11.9780 -2.7114 0.2094 20 7 13.0514 -1.9652 0.3617 21 14 11.1332 -3.4487 1.7034 22 1 11.7163 -4.7832 1.9935 23 1 11.3310 -2.5569 2.8742 24 1 9.6806 -3.5920 1.4302 25 6 10.5684 -5.1703 -3.1830 26 6 10.0162 -5.4391 -4.5843 27 6 12.0609 -4.8473 -3.2768 28 6 4.2239 -2.1986 -0.7633 29 6 3.4263 -3.3168 -1.3833 30 1 -0.3633 -0.5139 0.8899 31 1 -0.3633 1.0277 0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 1.6982 -2.0059 0.0668 34 1 3.8090 0.6625 0.9910 35 1 6.2619 0.6667 0.8260 36 1 7.4258 -1.1563 -0.3429 37 1 8.1445 -2.4556 -1.4465 38 1 7.9225 -4.4112 -3.4722 39 1 8.1990 -5.2392 -1.9210 40 1 9.9178 -4.1093 -0.4443 41 1 13.4040 -1.7983 1.2498 42 1 10.4258 -6.0538 -2.5606 43 1 10.1588 -4.5556 -5.2067 44 1 10.5440 -6.2839 -5.0269 45 1 8.9528 -5.6690 -4.5179 46 1 12.4546 -4.6555 -2.2787 47 1 12.5885 -5.6926 -3.7188 48 1 12.2032 -3.9640 -3.8994 49 1 3.3988 -4.1657 -0.7000 50 1 2.4101 -2.9738 -1.5776 51 1 3.8930 -3.6197 -2.3205 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715504558.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:33 Heat of formation + Delta-G solvation = -37.866656 kcal Electronic energy + Delta-G solvation = -30902.210448 eV Core-core repulsion = 26801.721647 eV Total energy + Delta-G solvation = -4100.488801 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.00212 -39.83735 -38.25482 -37.28287 -35.19121 -34.10188 -33.16125 -32.47297 -31.39398 -30.81976 -29.42732 -27.97674 -26.91816 -26.24937 -24.27989 -23.36146 -22.04872 -21.34318 -21.18677 -20.11281 -19.47061 -18.36423 -17.66529 -17.23267 -16.22961 -16.13863 -15.94973 -15.51942 -15.36965 -14.85479 -14.67597 -14.40740 -14.09852 -13.85164 -13.78528 -13.47892 -13.38460 -13.07628 -12.97010 -12.85893 -12.74931 -12.51266 -12.37779 -12.19603 -12.10998 -12.00637 -11.66035 -11.39652 -11.26999 -11.11276 -10.90560 -10.63351 -10.62125 -10.29754 -10.18722 -10.16115 -10.00826 -9.52058 -9.47661 -9.00491 -8.95177 -8.63556 -8.29266 -7.36872 -5.84320 -3.20560 0.84240 1.12858 2.20772 2.70095 2.99831 3.31506 3.36080 3.40735 3.44175 3.81059 4.30651 4.52037 4.69650 4.74773 4.78674 4.87642 4.91706 5.02203 5.12856 5.21981 5.25773 5.33361 5.39990 5.42215 5.54733 5.56800 5.65797 5.68317 5.72375 5.75901 5.88621 6.02239 6.07235 6.11947 6.15981 6.19455 6.27462 6.35675 6.38219 6.40799 6.49446 6.55863 6.62163 6.81919 6.82675 6.98657 7.03098 7.32188 7.73552 7.78271 7.91661 8.33805 8.40686 9.11744 9.83999 10.03251 11.33202 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012678 B = 0.002839 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.067641 B = 9861.287525 C =11406.415366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.509 3.491 3 O -0.526 6.526 4 N -0.670 5.670 5 C 0.123 3.877 6 C -0.095 4.095 7 C -0.115 4.115 8 C -0.090 4.090 9 C -0.121 4.121 10 C 0.555 3.445 11 O -0.544 6.544 12 N -0.710 5.710 13 C 0.111 3.889 14 C 0.174 3.826 15 H 0.063 0.937 16 N -0.747 5.747 17 C -0.242 4.242 18 H 0.095 0.905 19 C 0.008 3.992 20 N -0.930 5.930 21 Si 0.878 3.122 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.277 1.277 25 C -0.108 4.108 26 C -0.149 4.149 27 C -0.140 4.140 28 C -0.050 4.050 29 C -0.117 4.117 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.412 0.588 34 H 0.143 0.857 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.409 0.591 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.362 0.638 41 H 0.260 0.740 42 H 0.061 0.939 43 H 0.051 0.949 44 H 0.047 0.953 45 H 0.050 0.950 46 H 0.089 0.911 47 H 0.031 0.969 48 H 0.043 0.957 49 H 0.074 0.926 50 H 0.050 0.950 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.000 -0.734 -2.861 23.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.297 3.703 3 O -0.402 6.402 4 N -0.316 5.316 5 C 0.029 3.971 6 C -0.115 4.115 7 C -0.134 4.134 8 C -0.109 4.109 9 C -0.124 4.124 10 C 0.343 3.657 11 O -0.425 6.425 12 N -0.362 5.362 13 C -0.013 4.013 14 C 0.064 3.936 15 H 0.081 0.919 16 N -0.390 5.390 17 C -0.372 4.372 18 H 0.113 0.887 19 C -0.188 4.188 20 N -0.577 5.577 21 Si 0.708 3.292 22 H -0.212 1.212 23 H -0.218 1.218 24 H -0.203 1.203 25 C -0.130 4.130 26 C -0.207 4.207 27 C -0.197 4.197 28 C -0.054 4.054 29 C -0.173 4.173 30 H 0.110 0.890 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.248 0.752 34 H 0.161 0.839 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.247 0.753 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.195 0.805 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.107 0.893 47 H 0.050 0.950 48 H 0.062 0.938 49 H 0.093 0.907 50 H 0.069 0.931 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -22.847 -0.470 -3.193 23.074 hybrid contribution -0.335 -0.586 1.445 1.595 sum -23.182 -1.056 -1.748 23.272 Atomic orbital electron populations 1.21928 0.90639 1.06047 1.04618 1.21028 0.90926 0.83112 0.75218 1.90731 1.70420 1.31327 1.47729 1.43543 1.05143 1.09983 1.72885 1.17429 0.82538 0.97198 0.99914 1.21482 0.93843 0.98300 0.97899 1.21035 0.93853 0.98773 0.99707 1.21487 1.00486 0.92908 0.96043 1.19611 0.92947 0.96881 1.02976 1.18167 0.82209 0.86000 0.79338 1.90677 1.65695 1.33857 1.52249 1.45971 1.07316 1.24748 1.58122 1.21815 0.93145 0.89706 0.96642 1.20545 0.88460 0.96361 0.88234 0.91929 1.42849 1.33184 1.61275 1.01667 1.19041 1.01605 1.22254 0.94250 0.88729 1.24652 0.97466 0.99748 0.96912 1.69687 1.23644 1.42184 1.22168 0.86665 0.79356 0.78964 0.84185 1.21194 1.21827 1.20289 1.21692 0.97044 0.99151 0.95093 1.21939 1.00279 1.00994 0.97496 1.21830 0.94565 0.99125 1.04177 1.19713 0.92811 0.96588 0.96259 1.20984 0.97568 0.95407 1.03341 0.89049 0.88496 0.88986 0.75177 0.83908 0.84858 0.84790 0.75312 0.91012 0.91793 0.80514 0.93008 0.92004 0.92997 0.93414 0.93075 0.89258 0.94983 0.93764 0.90698 0.93149 0.88128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.75 10.32 36.00 0.37 -0.38 16 2 C 0.51 4.65 7.79 -10.99 -0.09 4.56 16 3 O -0.53 -7.06 14.41 5.55 0.08 -6.98 16 4 N -0.67 -5.85 4.77 -9.89 -0.05 -5.89 16 5 C 0.12 1.48 6.31 -83.73 -0.53 0.96 16 6 C -0.10 -1.22 8.71 -39.31 -0.34 -1.56 16 7 C -0.12 -1.47 10.02 -39.67 -0.40 -1.86 16 8 C -0.09 -1.24 9.52 -39.16 -0.37 -1.61 16 9 C -0.12 -1.75 5.87 -104.99 -0.62 -2.36 16 10 C 0.56 8.88 7.70 -12.32 -0.09 8.78 16 11 O -0.54 -9.47 13.35 5.32 0.07 -9.40 16 12 N -0.71 -11.21 5.34 -61.24 -0.33 -11.54 16 13 C 0.11 1.74 4.73 -4.04 -0.02 1.72 16 14 C 0.17 2.99 2.18 -67.93 -0.15 2.85 16 15 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 16 N -0.75 -15.61 4.25 -53.42 -0.23 -15.83 16 17 C -0.24 -6.07 8.04 -15.06 -0.12 -6.19 16 18 H 0.09 2.57 7.61 -52.49 -0.40 2.17 16 19 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 20 N -0.93 -27.57 13.97 55.49 0.78 -26.79 16 21 Si 0.88 21.03 27.74 -169.99 -4.71 16.31 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.28 -6.24 6.52 56.52 0.37 -5.87 16 25 C -0.11 -1.74 2.69 -90.62 -0.24 -1.98 16 26 C -0.15 -1.98 8.84 37.16 0.33 -1.65 16 27 C -0.14 -2.48 8.25 37.16 0.31 -2.18 16 28 C -0.05 -0.65 5.93 -104.02 -0.62 -1.27 16 29 C -0.12 -1.31 8.31 36.01 0.30 -1.01 16 30 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.10 0.44 8.12 -51.93 -0.42 0.02 16 32 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.41 2.31 7.63 -40.82 -0.31 2.00 16 34 H 0.14 1.86 6.07 -52.48 -0.32 1.54 16 35 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.13 1.81 6.45 -52.48 -0.34 1.47 16 37 H 0.41 6.51 6.21 -40.82 -0.25 6.25 16 38 H 0.07 1.05 6.71 -51.93 -0.35 0.70 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.36 7.74 5.66 -40.82 -0.23 7.51 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.05 0.63 6.54 -51.93 -0.34 0.29 16 46 H 0.09 1.91 5.99 -51.93 -0.31 1.60 16 47 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 50 H 0.05 0.42 6.80 -51.93 -0.35 0.07 16 51 H 0.10 1.35 5.88 -51.93 -0.31 1.04 16 LS Contribution 402.69 15.07 6.07 6.07 Total: -1.00 -32.32 402.69 -8.45 -40.77 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: -7.75 Total: 16.36 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -2.38 Total: -3.07 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: 0.17 Total: -60.06 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: 0.15 Total: -16.38 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.71 Total: 16.31 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.32 -8.45 -40.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715504558.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.899 kcal (2) G-P(sol) polarization free energy of solvation -32.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds