Wall clock time and date at job start Wed Apr 1 2020 05:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21292 * 119.99967 * 2 1 4 4 N 1.34778 * 120.00183 * 180.02562 * 2 1 3 5 5 C 1.39953 * 120.00130 * 175.39174 * 4 2 1 6 6 C 1.38998 * 120.00392 * 33.32738 * 5 4 2 7 7 C 1.38207 * 120.22659 * 179.97438 * 6 5 4 8 8 C 1.38021 * 120.22191 * 359.76933 * 7 6 5 9 9 C 1.39583 * 119.99592 * 0.48796 * 8 7 6 10 10 C 1.47859 * 120.10973 * 179.76642 * 9 8 7 11 11 O 1.21553 * 119.99598 * 173.40872 * 10 9 8 12 12 N 1.34774 * 119.99899 * 353.39911 * 10 9 8 13 13 C 1.46504 * 119.99520 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47030 * 180.02562 * 13 12 10 15 15 H 1.08994 * 109.47224 * 295.00326 * 14 13 12 16 16 N 1.46504 * 109.46906 * 54.99866 * 14 13 12 17 17 C 1.36936 * 119.99541 * 204.72349 * 16 14 13 18 18 H 1.07998 * 120.00553 * 0.28222 * 17 16 14 19 19 C 1.38824 * 119.99546 * 180.27512 * 17 16 14 20 20 N 1.31618 * 119.99668 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00123 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47101 * 89.99698 * 21 19 17 23 23 H 1.48498 * 109.47178 * 209.99928 * 21 19 17 24 24 H 1.48504 * 109.47226 * 329.99682 * 21 19 17 25 25 C 1.53001 * 109.47151 * 174.99890 * 14 13 12 26 26 C 1.52997 * 109.46765 * 60.00031 * 25 14 13 27 27 C 1.52998 * 109.46831 * 179.97438 * 25 14 13 28 28 C 1.38600 * 119.99885 * 213.30727 * 5 4 2 29 29 C 1.50701 * 120.11103 * 0.02562 * 28 5 4 30 30 H 1.08996 * 109.47074 * 239.99729 * 1 2 3 31 31 H 1.09002 * 109.47009 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.46905 * 120.00022 * 1 2 3 33 33 H 0.96998 * 119.99675 * 355.38090 * 4 2 1 34 34 H 1.08004 * 119.87908 * 359.97438 * 6 5 4 35 35 H 1.08001 * 119.88636 * 180.02562 * 7 6 5 36 36 H 1.08006 * 120.00276 * 180.26944 * 8 7 6 37 37 H 0.96998 * 120.00303 * 0.02562 * 12 10 9 38 38 H 1.08998 * 109.47532 * 60.00330 * 13 12 10 39 39 H 1.09001 * 109.47142 * 299.99987 * 13 12 10 40 40 H 0.97004 * 120.00340 * 25.00316 * 16 14 13 41 41 H 0.96997 * 119.99604 * 180.02562 * 20 19 17 42 42 H 1.09003 * 109.47110 * 299.99768 * 25 14 13 43 43 H 1.09004 * 109.47023 * 60.00160 * 26 25 14 44 44 H 1.09001 * 109.46447 * 179.97438 * 26 25 14 45 45 H 1.08994 * 109.47283 * 299.99928 * 26 25 14 46 46 H 1.09001 * 109.47294 * 59.99849 * 27 25 14 47 47 H 1.09001 * 109.47199 * 179.97438 * 27 25 14 48 48 H 1.09004 * 109.47520 * 300.00184 * 27 25 14 49 49 H 1.09004 * 109.46691 * 263.06013 * 29 28 5 50 50 H 1.08998 * 109.46651 * 23.05491 * 29 28 5 51 51 H 1.08991 * 109.47164 * 143.05519 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5770 -1.1691 -0.0979 6 6 4.3150 -0.1388 0.4730 7 6 5.6939 -0.1364 0.3801 8 6 6.3478 -1.1595 -0.2762 9 6 5.6156 -2.1959 -0.8576 10 6 6.3133 -3.2905 -1.5656 11 8 5.6863 -4.2516 -1.9666 12 7 7.6442 -3.2224 -1.7667 13 6 8.3353 -4.3068 -2.4688 14 6 9.8280 -3.9841 -2.5620 15 1 9.9706 -3.1007 -3.1843 16 7 10.3567 -3.7267 -1.2202 17 6 11.4737 -2.9507 -1.0617 18 1 11.9624 -2.5247 -1.9255 19 6 11.9780 -2.7114 0.2094 20 7 13.0514 -1.9652 0.3617 21 14 11.1332 -3.4487 1.7034 22 1 11.7163 -4.7832 1.9935 23 1 11.3310 -2.5569 2.8742 24 1 9.6806 -3.5920 1.4302 25 6 10.5684 -5.1703 -3.1830 26 6 10.0162 -5.4391 -4.5843 27 6 12.0609 -4.8473 -3.2768 28 6 4.2239 -2.1986 -0.7633 29 6 3.4263 -3.3168 -1.3833 30 1 -0.3633 -0.5139 0.8899 31 1 -0.3633 1.0277 0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 1.6982 -2.0059 0.0668 34 1 3.8090 0.6625 0.9910 35 1 6.2619 0.6667 0.8260 36 1 7.4258 -1.1563 -0.3429 37 1 8.1445 -2.4556 -1.4465 38 1 7.9225 -4.4112 -3.4722 39 1 8.1990 -5.2392 -1.9210 40 1 9.9178 -4.1093 -0.4443 41 1 13.4040 -1.7983 1.2498 42 1 10.4258 -6.0538 -2.5606 43 1 10.1588 -4.5556 -5.2067 44 1 10.5440 -6.2839 -5.0269 45 1 8.9528 -5.6690 -4.5179 46 1 12.4546 -4.6555 -2.2787 47 1 12.5885 -5.6926 -3.7188 48 1 12.2032 -3.9640 -3.8994 49 1 3.3988 -4.1657 -0.7000 50 1 2.4101 -2.9738 -1.5776 51 1 3.8930 -3.6197 -2.3205 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715504558.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:32 Heat of formation + Delta-G solvation = -59.267948 kcal Electronic energy + Delta-G solvation = -30903.138478 eV Core-core repulsion = 26801.721647 eV Total energy + Delta-G solvation = -4101.416831 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.92531 -40.90752 -39.37876 -38.63669 -36.10909 -35.36507 -34.93659 -33.46443 -32.75726 -32.07113 -30.33813 -29.18844 -27.88368 -27.55109 -25.65317 -24.71943 -23.42036 -22.36886 -22.22429 -21.27138 -20.82395 -19.70118 -19.03783 -18.16576 -17.29302 -17.25366 -17.04339 -16.84009 -16.40904 -16.22906 -15.88610 -15.59068 -15.39072 -14.98220 -14.88043 -14.76398 -14.57506 -14.42369 -14.21810 -14.06516 -13.52385 -13.50523 -13.28125 -13.21475 -13.06667 -12.97790 -12.93800 -12.90101 -12.82077 -12.51031 -12.34763 -12.23505 -11.95189 -11.75843 -11.51819 -11.47313 -11.32291 -11.03812 -10.90319 -10.62878 -10.16184 -9.77181 -9.27206 -9.21338 -7.95039 -5.26991 -0.22454 0.16133 1.39427 1.41229 1.46932 1.47685 1.84769 1.98078 2.26747 2.51639 2.75750 3.36392 3.55174 3.65258 3.71345 3.81123 3.83820 3.95909 4.03001 4.24259 4.28324 4.30561 4.41593 4.44494 4.54670 4.61600 4.64821 4.67712 4.69186 4.76319 4.80554 4.91949 4.96099 5.05469 5.08416 5.11970 5.14689 5.17919 5.25091 5.27358 5.33016 5.37725 5.44620 5.54892 5.63186 5.77224 5.86550 5.87900 6.27489 6.37259 6.51693 7.06734 7.13178 7.15964 7.87790 8.06519 9.26027 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012678 B = 0.002839 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.067641 B = 9861.287525 C =11406.415366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.504 3.496 3 O -0.575 6.575 4 N -0.659 5.659 5 C 0.125 3.875 6 C -0.103 4.103 7 C -0.118 4.118 8 C -0.100 4.100 9 C -0.137 4.137 10 C 0.555 3.445 11 O -0.560 6.560 12 N -0.713 5.713 13 C 0.120 3.880 14 C 0.174 3.826 15 H 0.057 0.943 16 N -0.746 5.746 17 C -0.202 4.202 18 H 0.068 0.932 19 C -0.058 4.058 20 N -0.982 5.982 21 Si 0.938 3.062 22 H -0.290 1.290 23 H -0.303 1.303 24 H -0.254 1.254 25 C -0.104 4.104 26 C -0.141 4.141 27 C -0.134 4.134 28 C -0.055 4.055 29 C -0.110 4.110 30 H 0.118 0.882 31 H 0.094 0.906 32 H 0.116 0.884 33 H 0.428 0.572 34 H 0.141 0.859 35 H 0.147 0.853 36 H 0.131 0.869 37 H 0.408 0.592 38 H 0.088 0.912 39 H 0.063 0.937 40 H 0.363 0.637 41 H 0.254 0.746 42 H 0.062 0.938 43 H 0.054 0.946 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.047 0.953 47 H 0.051 0.949 48 H 0.038 0.962 49 H 0.077 0.923 50 H 0.080 0.920 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.429 -2.165 -3.452 26.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.295 3.705 3 O -0.454 6.454 4 N -0.306 5.306 5 C 0.031 3.969 6 C -0.123 4.123 7 C -0.136 4.136 8 C -0.120 4.120 9 C -0.141 4.141 10 C 0.344 3.656 11 O -0.441 6.441 12 N -0.364 5.364 13 C -0.004 4.004 14 C 0.066 3.934 15 H 0.075 0.925 16 N -0.389 5.389 17 C -0.333 4.333 18 H 0.086 0.914 19 C -0.249 4.249 20 N -0.633 5.633 21 Si 0.768 3.232 22 H -0.217 1.217 23 H -0.231 1.231 24 H -0.179 1.179 25 C -0.125 4.125 26 C -0.199 4.199 27 C -0.192 4.192 28 C -0.059 4.059 29 C -0.167 4.167 30 H 0.136 0.864 31 H 0.113 0.887 32 H 0.134 0.866 33 H 0.268 0.732 34 H 0.158 0.842 35 H 0.165 0.835 36 H 0.149 0.851 37 H 0.245 0.755 38 H 0.106 0.894 39 H 0.081 0.919 40 H 0.196 0.804 41 H 0.063 0.937 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.066 0.934 47 H 0.070 0.930 48 H 0.057 0.943 49 H 0.096 0.904 50 H 0.099 0.901 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -26.355 -1.963 -3.823 26.703 hybrid contribution 0.682 -0.130 1.506 1.659 sum -25.673 -2.094 -2.316 25.862 Atomic orbital electron populations 1.21968 0.86449 1.06738 1.07013 1.21980 0.92780 0.82183 0.73561 1.90716 1.71722 1.33003 1.49938 1.43571 1.03779 1.11051 1.72238 1.17502 0.84216 0.96326 0.98890 1.21591 0.93990 0.98589 0.98150 1.21215 0.94136 0.98868 0.99429 1.21503 1.00422 0.93315 0.96713 1.19637 0.93789 0.96846 1.03800 1.18373 0.82050 0.86149 0.79069 1.90669 1.65917 1.34531 1.52981 1.45997 1.07470 1.24686 1.58249 1.21722 0.91554 0.89536 0.97556 1.20692 0.89771 0.96776 0.86181 0.92525 1.42822 1.31970 1.60641 1.03455 1.18925 1.01313 1.20083 0.92932 0.91373 1.25257 0.98577 1.01373 0.99715 1.69846 1.26069 1.45194 1.22221 0.85668 0.79604 0.77403 0.80569 1.21674 1.23061 1.17852 1.21595 0.95602 0.98211 0.97124 1.21856 1.01091 1.01770 0.95190 1.21728 0.96066 0.99786 1.01607 1.19905 0.92447 0.97265 0.96248 1.20933 0.98713 0.94946 1.02066 0.86352 0.88740 0.86581 0.73174 0.84172 0.83497 0.85081 0.75488 0.89367 0.91915 0.80424 0.93729 0.91940 0.92656 0.91995 0.91706 0.93379 0.92976 0.94301 0.90398 0.90140 0.90173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.86 10.32 71.23 0.74 -0.12 16 2 C 0.50 8.15 7.79 87.66 0.68 8.83 16 3 O -0.57 -14.99 14.41 -3.07 -0.04 -15.03 16 4 N -0.66 -9.90 4.77 -303.59 -1.45 -11.35 16 5 C 0.13 2.84 6.31 38.11 0.24 3.08 16 6 C -0.10 -2.58 8.71 22.44 0.20 -2.39 16 7 C -0.12 -2.97 10.02 22.21 0.22 -2.75 16 8 C -0.10 -2.73 9.52 22.54 0.21 -2.52 16 9 C -0.14 -3.88 5.87 -20.10 -0.12 -4.00 16 10 C 0.55 17.19 7.70 86.79 0.67 17.85 16 11 O -0.56 -18.69 13.35 -3.88 -0.05 -18.75 16 12 N -0.71 -21.77 5.34 -465.94 -2.49 -24.25 16 13 C 0.12 3.55 4.73 86.38 0.41 3.95 16 14 C 0.17 5.81 2.18 44.99 0.10 5.90 16 15 H 0.06 1.99 8.08 -2.39 -0.02 1.97 16 16 N -0.75 -30.85 4.25 -322.92 -1.37 -32.22 16 17 C -0.20 -10.30 8.04 84.04 0.68 -9.62 16 18 H 0.07 3.83 7.61 -2.91 -0.02 3.81 16 19 C -0.06 -3.21 5.50 84.87 0.47 -2.74 16 20 N -0.98 -60.39 13.97 21.66 0.30 -60.09 16 21 Si 0.94 44.12 27.74 68.60 1.90 46.02 16 22 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 23 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 24 H -0.25 -10.79 6.52 99.48 0.65 -10.14 16 25 C -0.10 -3.17 2.69 -10.79 -0.03 -3.20 16 26 C -0.14 -3.34 8.84 71.98 0.64 -2.70 16 27 C -0.13 -4.71 8.25 71.98 0.59 -4.12 16 28 C -0.06 -1.35 5.93 -19.47 -0.12 -1.47 16 29 C -0.11 -2.25 8.31 71.24 0.59 -1.65 16 30 H 0.12 0.04 8.14 -2.39 -0.02 0.02 16 31 H 0.09 0.61 8.12 -2.39 -0.02 0.60 16 32 H 0.12 0.11 8.14 -2.39 -0.02 0.09 16 33 H 0.43 3.35 7.63 -92.71 -0.71 2.65 16 34 H 0.14 3.62 6.07 -2.91 -0.02 3.60 16 35 H 0.15 3.16 8.06 -2.91 -0.02 3.13 16 36 H 0.13 3.56 6.45 -2.91 -0.02 3.54 16 37 H 0.41 12.76 6.21 -92.71 -0.58 12.19 16 38 H 0.09 2.35 6.71 -2.39 -0.02 2.34 16 39 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.36 15.08 5.66 -92.71 -0.52 14.55 16 41 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 42 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.06 1.38 6.54 -2.39 -0.02 1.36 16 46 H 0.05 2.08 5.99 -2.39 -0.01 2.06 16 47 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 48 H 0.04 1.36 8.14 -2.39 -0.02 1.35 16 49 H 0.08 1.54 8.14 -2.39 -0.02 1.53 16 50 H 0.08 1.09 6.80 -2.39 -0.02 1.08 16 51 H 0.08 2.02 5.88 -2.39 -0.01 2.01 16 Total: -1.00 -72.47 402.69 2.08 -70.39 By element: Atomic # 1 Polarization: 43.80 SS G_CDS: -0.89 Total: 42.91 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 6.17 Total: 2.36 kcal Atomic # 7 Polarization: -122.90 SS G_CDS: -5.00 Total: -127.91 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -0.10 Total: -33.78 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.90 Total: 46.02 kcal Total: -72.47 2.08 -70.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715504558.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.124 kcal (2) G-P(sol) polarization free energy of solvation -72.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds