Wall clock time and date at job start Wed Apr 1 2020 04:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38379 * 119.92633 * 2 1 4 4 C 1.38338 * 120.28861 * 180.25496 * 3 2 1 5 5 C 1.37975 * 120.14736 * 359.48403 * 4 3 2 6 6 C 1.50708 * 120.07457 * 180.23249 * 5 4 3 7 7 C 1.39559 * 119.85181 * 0.49072 * 5 4 3 8 8 C 1.47848 * 120.14502 * 179.74341 * 7 5 4 9 9 O 1.21551 * 119.99892 * 310.13496 * 8 7 5 10 10 N 1.34774 * 119.99678 * 130.13520 * 8 7 5 11 11 C 1.46501 * 120.00251 * 4.44253 * 10 8 7 12 12 C 1.46501 * 119.99866 * 184.43902 * 10 8 7 13 13 C 1.53003 * 109.47218 * 89.99875 * 12 10 8 14 14 N 1.46903 * 109.47214 * 180.02562 * 13 12 10 15 15 C 1.46901 * 110.99857 * 66.04596 * 14 13 12 16 16 C 1.46897 * 110.99920 * 190.00213 * 14 13 12 17 17 C 1.50695 * 109.47177 * 169.99815 * 16 14 13 18 18 O 1.21293 * 120.00016 * 0.02562 * 17 16 14 19 19 N 1.34780 * 120.00415 * 179.97438 * 17 16 14 20 20 C 1.37098 * 120.00357 * 180.02562 * 19 17 16 21 21 H 1.07996 * 119.99622 * 0.02562 * 20 19 17 22 22 C 1.38945 * 120.00053 * 180.02562 * 20 19 17 23 23 N 1.31417 * 119.99913 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00054 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46887 * 60.00132 * 24 22 20 26 26 H 1.48496 * 109.47270 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47195 * 300.00150 * 24 22 20 28 28 C 1.37940 * 119.92698 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.46752 * 90.00396 * 1 2 3 30 30 H 1.09003 * 109.47056 * 210.00353 * 1 2 3 31 31 H 1.09001 * 109.47210 * 330.00318 * 1 2 3 32 32 H 1.07992 * 119.85728 * 359.97438 * 3 2 1 33 33 H 1.08000 * 119.92747 * 179.74155 * 4 3 2 34 34 H 1.09000 * 109.47086 * 264.78828 * 6 5 4 35 35 H 1.08992 * 109.47089 * 24.79509 * 6 5 4 36 36 H 1.09000 * 109.46864 * 144.79796 * 6 5 4 37 37 H 1.08994 * 109.46988 * 93.07576 * 11 10 8 38 38 H 1.09003 * 109.46865 * 213.07476 * 11 10 8 39 39 H 1.09002 * 109.46938 * 333.06732 * 11 10 8 40 40 H 1.08994 * 109.47636 * 210.00338 * 12 10 8 41 41 H 1.09007 * 109.47212 * 330.00137 * 12 10 8 42 42 H 1.09002 * 109.47068 * 300.00453 * 13 12 10 43 43 H 1.09003 * 109.47015 * 60.00493 * 13 12 10 44 44 H 1.09001 * 109.46663 * 60.00420 * 15 14 13 45 45 H 1.08995 * 109.46868 * 179.97438 * 15 14 13 46 46 H 1.08999 * 109.47473 * 300.00103 * 15 14 13 47 47 H 1.08999 * 109.46984 * 290.00032 * 16 14 13 48 48 H 1.09000 * 109.46939 * 50.00039 * 16 14 13 49 49 H 0.96999 * 119.99771 * 0.02562 * 19 17 16 50 50 H 0.96996 * 119.99943 * 179.97438 * 23 22 20 51 51 H 1.08004 * 120.07284 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2080 -0.0053 5 6 4.2812 0.0194 0.0001 6 6 5.7883 0.0308 -0.0004 7 6 3.5911 -1.1937 0.0006 8 6 4.3352 -2.4712 0.0006 9 8 5.2272 -2.6551 -0.8044 10 7 4.0245 -3.4320 0.8933 11 6 2.8872 -3.2504 1.7988 12 6 4.8240 -4.6579 0.9581 13 6 5.9730 -4.4656 1.9500 14 7 6.7750 -5.6947 2.0145 15 6 7.4547 -5.9474 0.7370 16 6 7.7391 -5.6367 3.1213 17 6 8.3674 -6.9931 3.3118 18 8 8.0443 -7.9171 2.5956 19 7 9.2892 -7.1792 4.2773 20 6 9.8613 -8.4131 4.4503 21 1 9.5735 -9.2358 3.8126 22 6 10.8112 -8.6051 5.4460 23 7 11.1609 -7.6041 6.2223 24 14 11.5911 -10.2861 5.6812 25 1 12.2925 -10.6851 4.4345 26 1 12.5650 -10.2277 6.8006 27 1 10.5354 -11.2820 5.9956 28 6 2.1952 -1.1955 0.0005 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6539 2.1325 -0.0004 33 1 4.1136 2.1474 -0.0095 34 1 6.1520 -0.0646 -1.0235 35 1 6.1446 0.9685 0.4260 36 1 6.1581 -0.8033 0.5958 37 1 1.9959 -3.6951 1.3563 38 1 3.1004 -3.7352 2.7515 39 1 2.7194 -2.1859 1.9624 40 1 4.1949 -5.4850 1.2868 41 1 5.2295 -4.8799 -0.0291 42 1 6.6021 -3.6384 1.6212 43 1 5.5675 -4.2437 2.9371 44 1 8.1145 -5.1113 0.5049 45 1 8.0416 -6.8627 0.8126 46 1 6.7128 -6.0554 -0.0543 47 1 8.5144 -4.9063 2.8899 48 1 7.2245 -5.3429 4.0363 49 1 9.5479 -6.4402 4.8498 50 1 11.8237 -7.7382 6.9176 51 1 1.6552 -2.1308 0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715535382.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:03 Heat of formation + Delta-G solvation = -36.478013 kcal Electronic energy + Delta-G solvation = -30101.687138 eV Core-core repulsion = 26001.258553 eV Total energy + Delta-G solvation = -4100.428585 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.85629 -39.03948 -38.47913 -36.72875 -35.51957 -34.13539 -33.82371 -31.94616 -31.21700 -29.85569 -29.41675 -27.64811 -27.08150 -25.67853 -25.13187 -24.34569 -23.27399 -21.79506 -20.90990 -19.33299 -19.06672 -17.81757 -17.44356 -16.73344 -16.19416 -16.10223 -16.01606 -15.41169 -15.11615 -14.72528 -14.54159 -14.48882 -14.24839 -13.96398 -13.81120 -13.62665 -13.40800 -13.34928 -13.20270 -13.16504 -12.84831 -12.74388 -12.53923 -12.28183 -12.07297 -12.03742 -11.86006 -11.78592 -11.48568 -11.42497 -11.27344 -11.18900 -10.88556 -10.75262 -10.42167 -10.19131 -10.04984 -9.44181 -9.27399 -8.97426 -8.83648 -8.39383 -7.95164 -7.82727 -6.39098 -3.79832 0.64536 0.93868 2.44139 2.72438 3.21937 3.27335 3.31875 3.33564 3.93681 4.06043 4.16316 4.31914 4.37483 4.42496 4.55924 4.76369 4.85995 4.89118 4.98108 5.05078 5.12023 5.15778 5.17139 5.23880 5.27691 5.29284 5.34065 5.41433 5.45050 5.52872 5.53255 5.62345 5.71207 5.77179 5.82635 5.87521 5.92405 5.94532 6.00392 6.08937 6.11151 6.15479 6.28740 6.33074 6.52156 6.63362 7.11396 7.29633 7.41186 7.57546 7.92693 8.09022 8.64873 9.20754 9.57363 10.09509 10.78656 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024588 B = 0.001761 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.476157 B =15894.015419 C =16130.327624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.100 4.100 3 C -0.098 4.098 4 C -0.122 4.122 5 C -0.040 4.040 6 C -0.116 4.116 7 C -0.124 4.124 8 C 0.559 3.441 9 O -0.526 6.526 10 N -0.609 5.609 11 C 0.072 3.928 12 C 0.117 3.883 13 C 0.042 3.958 14 N -0.516 5.516 15 C 0.021 3.979 16 C 0.047 3.953 17 C 0.445 3.555 18 O -0.577 6.577 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 C -0.086 4.086 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.033 0.967 43 H 0.072 0.928 44 H 0.015 0.985 45 H 0.096 0.904 46 H 0.061 0.939 47 H 0.047 0.953 48 H 0.087 0.913 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.605 20.465 -9.226 30.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.100 4.100 3 C -0.116 4.116 4 C -0.140 4.140 5 C -0.040 4.040 6 C -0.173 4.173 7 C -0.127 4.127 8 C 0.347 3.653 9 O -0.402 6.402 10 N -0.342 5.342 11 C -0.071 4.071 12 C -0.005 4.005 13 C -0.087 4.087 14 N -0.240 5.240 15 C -0.127 4.127 16 C -0.084 4.084 17 C 0.230 3.770 18 O -0.461 6.461 19 N -0.202 5.202 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.105 4.105 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.143 0.857 33 H 0.147 0.853 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.051 0.949 43 H 0.091 0.909 44 H 0.034 0.966 45 H 0.114 0.886 46 H 0.080 0.920 47 H 0.065 0.935 48 H 0.105 0.895 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -20.515 19.321 -9.878 29.862 hybrid contribution 1.064 0.414 0.555 1.269 sum -19.451 19.735 -9.322 29.236 Atomic orbital electron populations 1.20789 0.90710 1.02988 1.02520 1.19832 0.96323 0.92786 1.01047 1.21191 0.94125 0.97666 0.98581 1.21005 0.94103 0.97455 1.01443 1.19929 0.96505 0.91540 0.96062 1.20843 0.90347 1.02586 1.03479 1.19759 0.93823 0.93100 1.06053 1.18393 0.82949 0.83271 0.80669 1.90805 1.31339 1.79952 1.38136 1.47777 1.31256 1.18910 1.36267 1.22030 0.88192 1.02917 0.93977 1.21514 0.92750 0.84988 1.01251 1.22426 0.95223 0.91486 0.99585 1.61523 1.24806 1.33335 1.04341 1.22582 0.98126 1.02073 0.89920 1.21853 0.94623 0.97038 0.94916 1.19719 0.83464 0.89536 0.84239 1.90482 1.64648 1.43367 1.47587 1.41859 1.35711 1.12367 1.30222 1.19650 1.18779 0.88617 1.15753 0.87958 1.25257 0.97438 0.99268 0.96017 1.69608 1.32987 1.31357 1.20469 0.85916 0.78756 0.81693 0.77833 1.19935 1.21018 1.19914 1.21211 0.92451 0.98295 0.98522 0.91080 0.91356 0.91374 0.85669 0.85350 0.90089 0.91467 0.91368 0.92302 0.90606 0.90453 0.89212 0.89293 0.94891 0.90942 0.96604 0.88564 0.92003 0.93488 0.89500 0.77514 0.91866 0.85314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.50 10.01 36.01 0.36 -0.14 16 2 C -0.10 -0.69 5.87 -104.68 -0.61 -1.30 16 3 C -0.10 -0.66 9.69 -39.49 -0.38 -1.04 16 4 C -0.12 -0.94 9.67 -39.64 -0.38 -1.33 16 5 C -0.04 -0.39 5.91 -104.22 -0.62 -1.01 16 6 C -0.12 -1.14 8.89 36.01 0.32 -0.82 16 7 C -0.12 -1.30 4.86 -104.97 -0.51 -1.81 16 8 C 0.56 7.05 6.31 -12.33 -0.08 6.97 16 9 O -0.53 -8.45 15.41 5.32 0.08 -8.37 16 10 N -0.61 -6.62 2.87 -182.69 -0.52 -7.15 16 11 C 0.07 0.53 9.11 59.85 0.55 1.07 16 12 C 0.12 1.46 5.38 -4.04 -0.02 1.44 16 13 C 0.04 0.59 5.28 -3.82 -0.02 0.57 16 14 N -0.52 -8.96 4.50 -244.37 -1.10 -10.06 16 15 C 0.02 0.37 8.96 60.06 0.54 0.90 16 16 C 0.05 0.87 5.45 -4.98 -0.03 0.85 16 17 C 0.45 10.67 7.47 -10.99 -0.08 10.59 16 18 O -0.58 -15.66 13.91 5.55 0.08 -15.58 16 19 N -0.56 -14.49 5.29 -10.97 -0.06 -14.55 16 20 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.74 13.05 55.50 0.72 -24.02 16 24 Si 0.93 21.23 29.55 -169.99 -5.02 16.21 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 28 C -0.09 -0.70 7.28 -39.19 -0.29 -0.99 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 31 H 0.07 0.23 8.08 -51.93 -0.42 -0.19 16 32 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 33 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.51 8.05 -51.93 -0.42 0.09 16 36 H 0.07 0.78 7.09 -51.93 -0.37 0.41 16 37 H 0.06 0.34 7.59 -51.93 -0.39 -0.05 16 38 H 0.08 0.51 8.10 -51.93 -0.42 0.09 16 39 H 0.08 0.53 5.70 -51.93 -0.30 0.23 16 40 H 0.09 1.04 8.07 -51.93 -0.42 0.62 16 41 H 0.09 1.26 5.77 -51.93 -0.30 0.96 16 42 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 43 H 0.07 0.92 7.93 -51.93 -0.41 0.51 16 44 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.10 2.00 5.82 -51.93 -0.30 1.69 16 46 H 0.06 0.98 6.47 -51.93 -0.34 0.65 16 47 H 0.05 0.82 8.12 -51.93 -0.42 0.40 16 48 H 0.09 1.44 7.93 -51.93 -0.41 1.03 16 49 H 0.39 9.63 7.90 -40.82 -0.32 9.30 16 50 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 51 H 0.13 0.87 6.65 -52.48 -0.35 0.52 16 LS Contribution 412.75 15.07 6.22 6.22 Total: -1.00 -33.69 412.75 -9.16 -42.85 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -8.06 Total: 8.54 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: -1.50 Total: 5.92 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: -0.96 Total: -55.78 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: 0.16 Total: -23.96 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.69 -9.16 -42.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715535382.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.369 kcal (2) G-P(sol) polarization free energy of solvation -33.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds