Wall clock time and date at job start Wed Apr 1 2020 04:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38379 * 119.92633 * 2 1 4 4 C 1.38338 * 120.28861 * 180.25496 * 3 2 1 5 5 C 1.37975 * 120.14736 * 359.48403 * 4 3 2 6 6 C 1.50708 * 120.07457 * 180.23249 * 5 4 3 7 7 C 1.39559 * 119.85181 * 0.49072 * 5 4 3 8 8 C 1.47848 * 120.14502 * 179.74341 * 7 5 4 9 9 O 1.21551 * 119.99892 * 310.13496 * 8 7 5 10 10 N 1.34774 * 119.99678 * 130.13520 * 8 7 5 11 11 C 1.46501 * 120.00251 * 4.44253 * 10 8 7 12 12 C 1.46501 * 119.99866 * 184.43902 * 10 8 7 13 13 C 1.53003 * 109.47218 * 89.99875 * 12 10 8 14 14 N 1.46903 * 109.47214 * 180.02562 * 13 12 10 15 15 C 1.46901 * 110.99857 * 66.04596 * 14 13 12 16 16 C 1.46897 * 110.99920 * 190.00213 * 14 13 12 17 17 C 1.50695 * 109.47177 * 169.99815 * 16 14 13 18 18 O 1.21293 * 120.00016 * 0.02562 * 17 16 14 19 19 N 1.34780 * 120.00415 * 179.97438 * 17 16 14 20 20 C 1.37098 * 120.00357 * 180.02562 * 19 17 16 21 21 H 1.07996 * 119.99622 * 0.02562 * 20 19 17 22 22 C 1.38945 * 120.00053 * 180.02562 * 20 19 17 23 23 N 1.31417 * 119.99913 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00054 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46887 * 60.00132 * 24 22 20 26 26 H 1.48496 * 109.47270 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47195 * 300.00150 * 24 22 20 28 28 C 1.37940 * 119.92698 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.46752 * 90.00396 * 1 2 3 30 30 H 1.09003 * 109.47056 * 210.00353 * 1 2 3 31 31 H 1.09001 * 109.47210 * 330.00318 * 1 2 3 32 32 H 1.07992 * 119.85728 * 359.97438 * 3 2 1 33 33 H 1.08000 * 119.92747 * 179.74155 * 4 3 2 34 34 H 1.09000 * 109.47086 * 264.78828 * 6 5 4 35 35 H 1.08992 * 109.47089 * 24.79509 * 6 5 4 36 36 H 1.09000 * 109.46864 * 144.79796 * 6 5 4 37 37 H 1.08994 * 109.46988 * 93.07576 * 11 10 8 38 38 H 1.09003 * 109.46865 * 213.07476 * 11 10 8 39 39 H 1.09002 * 109.46938 * 333.06732 * 11 10 8 40 40 H 1.08994 * 109.47636 * 210.00338 * 12 10 8 41 41 H 1.09007 * 109.47212 * 330.00137 * 12 10 8 42 42 H 1.09002 * 109.47068 * 300.00453 * 13 12 10 43 43 H 1.09003 * 109.47015 * 60.00493 * 13 12 10 44 44 H 1.09001 * 109.46663 * 60.00420 * 15 14 13 45 45 H 1.08995 * 109.46868 * 179.97438 * 15 14 13 46 46 H 1.08999 * 109.47473 * 300.00103 * 15 14 13 47 47 H 1.08999 * 109.46984 * 290.00032 * 16 14 13 48 48 H 1.09000 * 109.46939 * 50.00039 * 16 14 13 49 49 H 0.96999 * 119.99771 * 0.02562 * 19 17 16 50 50 H 0.96996 * 119.99943 * 179.97438 * 23 22 20 51 51 H 1.08004 * 120.07284 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2080 -0.0053 5 6 4.2812 0.0194 0.0001 6 6 5.7883 0.0308 -0.0004 7 6 3.5911 -1.1937 0.0006 8 6 4.3352 -2.4712 0.0006 9 8 5.2272 -2.6551 -0.8044 10 7 4.0245 -3.4320 0.8933 11 6 2.8872 -3.2504 1.7988 12 6 4.8240 -4.6579 0.9581 13 6 5.9730 -4.4656 1.9500 14 7 6.7750 -5.6947 2.0145 15 6 7.4547 -5.9474 0.7370 16 6 7.7391 -5.6367 3.1213 17 6 8.3674 -6.9931 3.3118 18 8 8.0443 -7.9171 2.5956 19 7 9.2892 -7.1792 4.2773 20 6 9.8613 -8.4131 4.4503 21 1 9.5735 -9.2358 3.8126 22 6 10.8112 -8.6051 5.4460 23 7 11.1609 -7.6041 6.2223 24 14 11.5911 -10.2861 5.6812 25 1 12.2925 -10.6851 4.4345 26 1 12.5650 -10.2277 6.8006 27 1 10.5354 -11.2820 5.9956 28 6 2.1952 -1.1955 0.0005 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6539 2.1325 -0.0004 33 1 4.1136 2.1474 -0.0095 34 1 6.1520 -0.0646 -1.0235 35 1 6.1446 0.9685 0.4260 36 1 6.1581 -0.8033 0.5958 37 1 1.9959 -3.6951 1.3563 38 1 3.1004 -3.7352 2.7515 39 1 2.7194 -2.1859 1.9624 40 1 4.1949 -5.4850 1.2868 41 1 5.2295 -4.8799 -0.0291 42 1 6.6021 -3.6384 1.6212 43 1 5.5675 -4.2437 2.9371 44 1 8.1145 -5.1113 0.5049 45 1 8.0416 -6.8627 0.8126 46 1 6.7128 -6.0554 -0.0543 47 1 8.5144 -4.9063 2.8899 48 1 7.2245 -5.3429 4.0363 49 1 9.5479 -6.4402 4.8498 50 1 11.8237 -7.7382 6.9176 51 1 1.6552 -2.1308 0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715535382.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:02 Heat of formation + Delta-G solvation = -58.595478 kcal Electronic energy + Delta-G solvation = -30102.646223 eV Core-core repulsion = 26001.258553 eV Total energy + Delta-G solvation = -4101.387671 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.65428 -40.41873 -39.64636 -38.12230 -36.60962 -35.83394 -34.72671 -33.29086 -32.69911 -30.80048 -30.10831 -29.15644 -27.86693 -27.08101 -26.08631 -25.56808 -24.15843 -22.74217 -21.89488 -21.01282 -20.08322 -19.84355 -18.26960 -17.88999 -17.58756 -16.93128 -16.75937 -16.59854 -16.53902 -16.25305 -15.89823 -15.64999 -15.36597 -15.06940 -14.98676 -14.76368 -14.36279 -14.19607 -14.10107 -14.03588 -13.80431 -13.73146 -13.45859 -13.41731 -13.23690 -13.09090 -13.00842 -12.77043 -12.63854 -12.56803 -12.51395 -12.42059 -12.37249 -12.12316 -11.98294 -11.89661 -11.45567 -10.96933 -10.34741 -10.00408 -9.90053 -9.78662 -9.44070 -9.32238 -8.45966 -5.94731 -0.00388 0.35992 1.40006 1.41653 1.52425 1.55397 1.87396 2.04704 2.29399 2.71230 2.80683 3.20353 3.37569 3.44486 3.81221 3.83980 3.90015 4.04549 4.04957 4.19383 4.24609 4.27190 4.32455 4.41304 4.42609 4.48640 4.54798 4.56954 4.61150 4.64084 4.65299 4.69505 4.76715 4.82834 4.85617 4.89761 4.91140 5.01877 5.10619 5.14364 5.31633 5.33428 5.38976 5.41512 5.52424 5.59691 5.81323 5.97262 6.00726 6.10469 6.26781 6.60782 7.01705 7.13060 7.56107 8.11940 8.71257 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024588 B = 0.001761 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.476157 B =15894.015419 C =16130.327624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.099 4.099 3 C -0.095 4.095 4 C -0.124 4.124 5 C -0.062 4.062 6 C -0.111 4.111 7 C -0.145 4.145 8 C 0.555 3.445 9 O -0.574 6.574 10 N -0.605 5.605 11 C 0.067 3.933 12 C 0.123 3.877 13 C 0.051 3.949 14 N -0.527 5.527 15 C 0.029 3.971 16 C 0.058 3.942 17 C 0.443 3.557 18 O -0.612 6.612 19 N -0.574 5.574 20 C -0.333 4.333 21 H 0.080 0.920 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.271 1.271 28 C -0.088 4.088 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.153 0.847 33 H 0.148 0.852 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.044 0.956 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.067 0.933 42 H 0.023 0.977 43 H 0.092 0.908 44 H 0.019 0.981 45 H 0.062 0.938 46 H 0.075 0.925 47 H 0.061 0.939 48 H 0.114 0.886 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.834 22.139 -8.288 32.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.099 4.099 3 C -0.113 4.113 4 C -0.141 4.141 5 C -0.063 4.063 6 C -0.167 4.167 7 C -0.148 4.148 8 C 0.345 3.655 9 O -0.454 6.454 10 N -0.337 5.337 11 C -0.074 4.074 12 C 0.000 4.000 13 C -0.078 4.078 14 N -0.251 5.251 15 C -0.119 4.119 16 C -0.073 4.073 17 C 0.230 3.770 18 O -0.498 6.498 19 N -0.211 5.211 20 C -0.462 4.462 21 H 0.098 0.902 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.198 1.198 26 H -0.195 1.195 27 H -0.196 1.196 28 C -0.107 4.107 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.171 0.829 33 H 0.166 0.834 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.063 0.937 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.121 0.879 41 H 0.086 0.914 42 H 0.041 0.959 43 H 0.110 0.890 44 H 0.037 0.963 45 H 0.080 0.920 46 H 0.094 0.906 47 H 0.079 0.921 48 H 0.132 0.868 49 H 0.229 0.771 50 H 0.087 0.913 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -22.781 21.024 -8.909 32.254 hybrid contribution 1.664 -0.034 0.233 1.680 sum -21.117 20.990 -8.676 31.013 Atomic orbital electron populations 1.20851 0.88675 1.04183 1.03198 1.20181 0.97774 0.92306 0.99626 1.21575 0.93833 0.98862 0.97033 1.21254 0.94818 0.97342 1.00714 1.20056 0.96322 0.92367 0.97544 1.20762 0.91095 1.02628 1.02257 1.19715 0.94782 0.92046 1.08222 1.18852 0.82445 0.84123 0.80129 1.90769 1.33549 1.80893 1.40139 1.47841 1.31643 1.17891 1.36309 1.22272 0.87511 1.03848 0.93804 1.21339 0.92755 0.86202 0.99672 1.22422 0.94873 0.89413 1.01042 1.61494 1.24541 1.35433 1.03644 1.22417 0.98262 1.00424 0.90800 1.21746 0.95354 0.93570 0.96649 1.20659 0.82406 0.91223 0.82732 1.90461 1.65509 1.45325 1.48525 1.41920 1.36354 1.11869 1.30974 1.19633 1.20583 0.89273 1.16743 0.90221 1.26047 0.97218 1.02902 0.95165 1.69671 1.33114 1.32848 1.20548 0.84979 0.77981 0.77293 0.78022 1.19815 1.19490 1.19627 1.21362 0.91457 0.99552 0.98299 0.90534 0.90491 0.89957 0.82908 0.83425 0.91583 0.89373 0.93724 0.90253 0.89594 0.89695 0.87947 0.91433 0.95918 0.88957 0.96295 0.91954 0.90640 0.92105 0.86796 0.77063 0.91317 0.84146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.01 71.24 0.71 0.11 16 2 C -0.10 -1.09 5.87 -19.90 -0.12 -1.21 16 3 C -0.10 -1.00 9.69 22.33 0.22 -0.78 16 4 C -0.12 -1.67 9.67 22.23 0.21 -1.46 16 5 C -0.06 -1.20 5.91 -19.61 -0.12 -1.31 16 6 C -0.11 -2.26 8.89 71.24 0.63 -1.62 16 7 C -0.14 -2.96 4.86 -20.09 -0.10 -3.06 16 8 C 0.55 14.23 6.31 86.79 0.55 14.78 16 9 O -0.57 -19.46 15.41 -3.88 -0.06 -19.52 16 10 N -0.61 -12.75 2.87 -850.18 -2.44 -15.20 16 11 C 0.07 0.84 9.11 127.77 1.16 2.01 16 12 C 0.12 3.03 5.38 86.38 0.46 3.49 16 13 C 0.05 1.39 5.28 86.30 0.46 1.84 16 14 N -0.53 -18.16 4.50 -927.05 -4.17 -22.33 16 15 C 0.03 1.05 8.96 127.69 1.14 2.20 16 16 C 0.06 2.12 5.45 85.56 0.47 2.59 16 17 C 0.44 21.60 7.47 87.65 0.66 22.26 16 18 O -0.61 -34.31 13.91 -3.07 -0.04 -34.35 16 19 N -0.57 -30.02 5.29 -306.99 -1.62 -31.64 16 20 C -0.33 -19.14 9.68 84.04 0.81 -18.32 16 21 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 22 C -0.01 -0.74 5.50 84.92 0.47 -0.27 16 23 N -0.92 -50.22 13.05 21.66 0.28 -49.94 16 24 Si 0.99 43.42 29.55 68.60 2.03 45.44 16 25 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 26 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 27 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 28 C -0.09 -1.28 7.28 22.53 0.16 -1.12 16 29 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.08 0.30 8.08 -2.39 -0.02 0.28 16 31 H 0.08 0.24 8.08 -2.39 -0.02 0.22 16 32 H 0.15 0.74 8.06 -2.91 -0.02 0.71 16 33 H 0.15 1.33 8.06 -2.91 -0.02 1.30 16 34 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.09 1.31 8.05 -2.39 -0.02 1.29 16 36 H 0.04 1.09 7.09 -2.39 -0.02 1.07 16 37 H 0.08 0.70 7.59 -2.39 -0.02 0.68 16 38 H 0.09 0.93 8.10 -2.39 -0.02 0.91 16 39 H 0.08 0.97 5.70 -2.39 -0.01 0.96 16 40 H 0.10 2.25 8.07 -2.39 -0.02 2.23 16 41 H 0.07 1.97 5.77 -2.38 -0.01 1.95 16 42 H 0.02 0.67 8.12 -2.39 -0.02 0.65 16 43 H 0.09 2.14 7.93 -2.39 -0.02 2.12 16 44 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.06 2.70 5.82 -2.39 -0.01 2.68 16 46 H 0.07 2.48 6.47 -2.39 -0.02 2.46 16 47 H 0.06 2.08 8.12 -2.39 -0.02 2.06 16 48 H 0.11 3.57 7.93 -2.39 -0.02 3.55 16 49 H 0.40 19.68 7.90 -92.71 -0.73 18.94 16 50 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 51 H 0.14 1.59 6.65 -2.91 -0.02 1.57 16 Total: -1.00 -75.49 412.75 1.97 -73.52 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: 0.21 Total: 33.89 kcal Atomic # 6 Polarization: 12.33 SS G_CDS: 7.79 Total: 20.12 kcal Atomic # 7 Polarization: -111.15 SS G_CDS: -7.95 Total: -119.11 kcal Atomic # 8 Polarization: -53.77 SS G_CDS: -0.10 Total: -53.87 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -75.49 1.97 -73.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715535382.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.926 kcal (2) G-P(sol) polarization free energy of solvation -75.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds