Wall clock time and date at job start Wed Apr 1 2020 04:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38257 * 120.00178 * 2 1 4 4 C 1.38215 * 120.00116 * 180.02562 * 3 2 1 5 5 C 1.38258 * 119.99784 * 359.76868 * 4 3 2 6 6 C 1.38208 * 120.00101 * 0.46158 * 5 4 3 7 7 C 1.50703 * 120.00093 * 179.78643 * 6 5 4 8 8 C 1.50700 * 109.47235 * 269.73338 * 7 6 5 9 9 O 1.21279 * 119.99847 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00158 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00067 * 179.97438 * 10 8 7 12 12 H 1.08989 * 109.47080 * 322.90267 * 11 10 8 13 13 C 1.53002 * 109.46895 * 82.91052 * 11 10 8 14 14 C 1.53005 * 109.46965 * 202.90376 * 11 10 8 15 15 N 1.46898 * 109.47195 * 55.13833 * 14 11 10 16 16 C 1.46896 * 111.00165 * 198.96498 * 15 14 11 17 17 C 1.46903 * 110.99781 * 75.01134 * 15 14 11 18 18 C 1.50698 * 109.47210 * 190.00091 * 17 15 14 19 19 O 1.21290 * 120.00198 * 0.02562 * 18 17 15 20 20 N 1.34780 * 120.00111 * 180.02562 * 18 17 15 21 21 C 1.37089 * 120.00210 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99887 * 359.97438 * 21 20 18 23 23 C 1.38946 * 120.00298 * 179.97438 * 21 20 18 24 24 N 1.31409 * 120.00193 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00434 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.46957 * 0.02562 * 25 23 21 27 27 H 1.48495 * 109.47067 * 119.99678 * 25 23 21 28 28 H 1.48495 * 109.47416 * 240.00045 * 25 23 21 29 29 C 1.38217 * 119.99829 * 179.97438 * 2 1 3 30 30 H 1.08992 * 109.46812 * 270.01430 * 1 2 3 31 31 H 1.08997 * 109.47024 * 30.01825 * 1 2 3 32 32 H 1.09007 * 109.46930 * 150.01902 * 1 2 3 33 33 H 1.07999 * 119.99759 * 359.97438 * 3 2 1 34 34 H 1.08002 * 119.99908 * 179.97438 * 4 3 2 35 35 H 1.08002 * 119.99443 * 180.26019 * 5 4 3 36 36 H 1.09000 * 109.46881 * 149.72997 * 7 6 5 37 37 H 1.08995 * 109.46582 * 29.72991 * 7 6 5 38 38 H 0.97008 * 119.99911 * 359.97438 * 10 8 7 39 39 H 1.08993 * 109.47539 * 59.99386 * 13 11 10 40 40 H 1.08996 * 109.47076 * 180.02562 * 13 11 10 41 41 H 1.09001 * 109.46409 * 299.99526 * 13 11 10 42 42 H 1.08998 * 109.47084 * 295.14029 * 14 11 10 43 43 H 1.08993 * 109.47151 * 175.14066 * 14 11 10 44 44 H 1.09000 * 109.47364 * 289.98089 * 16 15 14 45 45 H 1.08999 * 109.47146 * 49.98328 * 16 15 14 46 46 H 1.09002 * 109.47210 * 169.98035 * 16 15 14 47 47 H 1.08999 * 109.47243 * 310.00270 * 17 15 14 48 48 H 1.08999 * 109.47207 * 70.00148 * 17 15 14 49 49 H 0.97006 * 119.99903 * 359.97438 * 20 18 17 50 50 H 0.96999 * 120.00579 * 179.97438 * 24 23 21 51 51 H 1.07998 * 120.00560 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 -0.0001 0.0038 6 6 3.5807 -1.1970 -0.0010 7 6 4.3342 -2.5021 -0.0012 8 6 4.5844 -2.9376 -1.4221 9 8 4.1893 -2.2555 -2.3438 10 7 5.2472 -4.0849 -1.6685 11 6 5.4899 -4.5084 -3.0498 12 1 4.6265 -4.2548 -3.6646 13 6 6.7297 -3.7942 -3.5918 14 6 5.7158 -6.0213 -3.0871 15 7 4.5751 -6.7023 -2.4602 16 6 4.9303 -8.0731 -2.0695 17 6 3.4047 -6.6944 -3.3479 18 6 2.1951 -7.1755 -2.5887 19 8 2.2978 -7.4933 -1.4226 20 7 0.9991 -7.2528 -3.2053 21 6 -0.1011 -7.6910 -2.5148 22 1 -0.0095 -7.9747 -1.4767 23 6 -1.3342 -7.7701 -3.1503 24 7 -1.4459 -7.4245 -4.4132 25 14 -2.8333 -8.3679 -2.2096 26 1 -2.4446 -8.6923 -0.8135 27 1 -3.8685 -7.3033 -2.2000 28 1 -3.3784 -9.5826 -2.8671 29 6 2.1981 -1.1970 0.0005 30 1 -0.3633 0.0003 1.0276 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3633 -0.8902 -0.5136 33 1 1.6583 2.1326 -0.0004 34 1 4.1205 2.1326 -0.0010 35 1 5.3517 0.0000 0.0076 36 1 3.7454 -3.2616 0.5132 37 1 5.2869 -2.3716 0.5119 38 1 5.5635 -4.6303 -0.9313 39 1 7.5931 -4.0479 -2.9768 40 1 6.9101 -4.1090 -4.6196 41 1 6.5687 -2.7165 -3.5652 42 1 6.6284 -6.2659 -2.5436 43 1 5.8105 -6.3490 -4.1223 44 1 5.0584 -8.6840 -2.9631 45 1 5.8608 -8.0596 -1.5021 46 1 4.1351 -8.4928 -1.4533 47 1 3.2283 -5.6807 -3.7077 48 1 3.5874 -7.3543 -4.1960 49 1 0.9169 -6.9983 -4.1378 50 1 -2.3066 -7.4800 -4.8570 51 1 1.6581 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716042352.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:27 Heat of formation + Delta-G solvation = -51.562105 kcal Electronic energy + Delta-G solvation = -30734.693687 eV Core-core repulsion = 26633.611006 eV Total energy + Delta-G solvation = -4101.082681 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.06823 -39.09010 -38.45853 -36.86602 -34.66929 -33.74783 -33.46878 -32.06609 -31.22768 -30.95769 -28.05358 -27.70449 -26.93817 -26.75819 -24.69358 -22.80526 -22.15400 -21.46697 -20.51728 -19.98533 -19.10727 -17.83335 -17.06143 -16.54596 -16.12923 -16.09492 -15.68201 -15.24295 -14.89616 -14.65141 -14.51215 -14.41273 -13.96751 -13.80665 -13.62898 -13.52289 -13.42558 -13.12184 -12.98884 -12.82075 -12.60784 -12.26278 -12.13929 -12.03193 -11.87666 -11.83384 -11.73531 -11.47921 -11.39819 -11.22438 -11.05129 -11.03498 -10.93700 -10.61763 -10.33563 -10.21264 -9.69604 -9.47561 -8.86176 -8.71988 -8.54240 -8.45663 -7.97364 -7.86190 -6.39952 -3.80782 1.37146 1.46160 2.86548 3.16911 3.27327 3.31664 3.34277 3.85238 3.92109 4.00199 4.24348 4.64951 4.73780 4.79646 4.91172 5.01849 5.10523 5.13892 5.20141 5.23607 5.27237 5.31185 5.35689 5.43099 5.51830 5.53791 5.56635 5.62381 5.63454 5.67007 5.70827 5.75304 5.87038 5.89774 5.98741 6.04173 6.12040 6.14217 6.18901 6.29513 6.47720 6.51176 6.60627 6.67213 6.68070 7.06406 7.22639 7.34084 7.56580 7.73079 8.07908 8.46223 8.63416 9.19748 9.56439 10.07993 10.77898 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007176 B = 0.003462 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3900.933520 B = 8087.010972 C =11175.038583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.084 4.084 3 C -0.125 4.125 4 C -0.119 4.119 5 C -0.114 4.114 6 C -0.057 4.057 7 C -0.104 4.104 8 C 0.518 3.482 9 O -0.538 6.538 10 N -0.707 5.707 11 C 0.147 3.853 12 H 0.085 0.915 13 C -0.161 4.161 14 C 0.043 3.957 15 N -0.515 5.515 16 C 0.023 3.977 17 C 0.044 3.956 18 C 0.446 3.554 19 O -0.579 6.579 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.928 3.072 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 C -0.102 4.102 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.403 0.597 39 H 0.055 0.945 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.048 0.952 44 H 0.015 0.985 45 H 0.057 0.943 46 H 0.097 0.903 47 H 0.086 0.914 48 H 0.047 0.953 49 H 0.391 0.609 50 H 0.271 0.729 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.875 11.650 5.472 19.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.084 4.084 3 C -0.143 4.143 4 C -0.137 4.137 5 C -0.132 4.132 6 C -0.057 4.057 7 C -0.144 4.144 8 C 0.304 3.696 9 O -0.415 6.415 10 N -0.358 5.358 11 C 0.042 3.958 12 H 0.103 0.897 13 C -0.219 4.219 14 C -0.086 4.086 15 N -0.239 5.239 16 C -0.125 4.125 17 C -0.087 4.087 18 C 0.232 3.768 19 O -0.463 6.463 20 N -0.201 5.201 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.755 3.245 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 C -0.120 4.120 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.124 0.876 37 H 0.117 0.883 38 H 0.237 0.763 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.066 0.934 44 H 0.034 0.966 45 H 0.076 0.924 46 H 0.115 0.885 47 H 0.104 0.896 48 H 0.065 0.935 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 14.356 12.160 5.889 19.714 hybrid contribution -0.474 -0.891 -0.762 1.265 sum 13.882 11.269 5.127 18.601 Atomic orbital electron populations 1.20809 0.91202 1.03052 1.02213 1.19891 0.96105 0.93049 0.99351 1.20980 0.94258 0.97336 1.01712 1.21017 0.94288 0.97686 1.00726 1.20893 0.99376 0.92032 1.00902 1.19257 0.93516 0.93576 0.99383 1.20681 1.02026 0.96427 0.95278 1.20396 0.77287 0.80908 0.91023 1.90712 1.50490 1.54079 1.46187 1.45749 1.58127 1.23436 1.08480 1.20906 0.98365 0.92787 0.83757 0.89703 1.22140 0.97389 1.01509 1.00909 1.22499 0.94323 0.93248 0.98559 1.61562 1.03345 1.17906 1.41049 1.22555 1.02194 0.87992 0.99710 1.21938 0.91254 1.01649 0.93891 1.19683 0.84115 0.84831 0.88197 1.90461 1.84943 1.54078 1.16839 1.41875 1.06860 1.57947 1.13417 1.19722 0.85708 1.40107 0.97183 0.87909 1.25255 0.99183 0.97638 0.95871 1.69619 1.26130 1.48311 1.10174 0.85823 0.80824 0.78202 0.79631 1.19232 1.20742 1.20791 1.20973 0.93508 0.97938 0.99614 0.91254 0.91684 0.91147 0.86429 0.86356 0.86561 0.87592 0.88308 0.76299 0.92563 0.91808 0.91860 0.90355 0.93425 0.96626 0.92438 0.88468 0.89550 0.93507 0.77547 0.91936 0.85921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 10.01 36.01 0.36 -0.92 16 2 C -0.08 -1.09 5.88 -104.62 -0.62 -1.70 16 3 C -0.12 -1.46 9.70 -39.58 -0.38 -1.84 16 4 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 5 C -0.11 -1.37 9.70 -39.58 -0.38 -1.75 16 6 C -0.06 -0.75 4.37 -104.62 -0.46 -1.21 16 7 C -0.10 -1.20 5.83 -29.03 -0.17 -1.37 16 8 C 0.52 7.39 7.76 -10.99 -0.09 7.31 16 9 O -0.54 -9.82 15.71 5.56 0.09 -9.73 16 10 N -0.71 -8.70 4.83 -53.81 -0.26 -8.96 16 11 C 0.15 1.80 2.55 -67.93 -0.17 1.63 16 12 H 0.08 1.28 6.41 -51.94 -0.33 0.95 16 13 C -0.16 -1.62 9.46 37.16 0.35 -1.27 16 14 C 0.04 0.49 4.54 -3.82 -0.02 0.47 16 15 N -0.51 -7.91 4.16 -244.38 -1.02 -8.93 16 16 C 0.02 0.35 9.19 60.06 0.55 0.90 16 17 C 0.04 0.79 5.28 -4.98 -0.03 0.76 16 18 C 0.45 10.48 7.54 -10.99 -0.08 10.40 16 19 O -0.58 -15.17 13.89 5.55 0.08 -15.09 16 20 N -0.56 -14.44 5.29 -10.97 -0.06 -14.50 16 21 C -0.30 -8.32 9.68 -14.94 -0.14 -8.46 16 22 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.80 13.05 55.50 0.72 -24.08 16 25 Si 0.93 21.15 29.55 -169.99 -5.02 16.12 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 29 C -0.10 -1.45 9.36 -39.58 -0.37 -1.82 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 32 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 33 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 34 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.11 1.18 8.09 -51.93 -0.42 0.76 16 37 H 0.10 0.83 8.08 -51.93 -0.42 0.41 16 38 H 0.40 4.26 8.58 -40.82 -0.35 3.91 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 42 H 0.08 0.75 7.75 -51.93 -0.40 0.35 16 43 H 0.05 0.52 8.01 -51.93 -0.42 0.10 16 44 H 0.02 0.22 8.06 -51.93 -0.42 -0.20 16 45 H 0.06 0.70 7.83 -51.93 -0.41 0.29 16 46 H 0.10 1.81 6.01 -51.93 -0.31 1.50 16 47 H 0.09 1.53 6.67 -51.93 -0.35 1.18 16 48 H 0.05 0.78 8.06 -51.93 -0.42 0.36 16 49 H 0.39 9.73 7.90 -40.82 -0.32 9.41 16 50 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 51 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 422.06 15.07 6.36 6.36 Total: -1.00 -33.78 422.06 -9.55 -43.33 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: -8.30 Total: 15.59 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -2.14 Total: -0.11 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: -0.61 Total: -56.47 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: 0.16 Total: -24.82 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -33.78 -9.55 -43.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716042352.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.236 kcal (2) G-P(sol) polarization free energy of solvation -33.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds