Wall clock time and date at job start Wed Apr 1 2020 04:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38257 * 120.00178 * 2 1 4 4 C 1.38215 * 120.00116 * 180.02562 * 3 2 1 5 5 C 1.38258 * 119.99784 * 359.76868 * 4 3 2 6 6 C 1.38208 * 120.00101 * 0.46158 * 5 4 3 7 7 C 1.50703 * 120.00093 * 179.78643 * 6 5 4 8 8 C 1.50700 * 109.47235 * 269.73338 * 7 6 5 9 9 O 1.21279 * 119.99847 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00158 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00067 * 179.97438 * 10 8 7 12 12 H 1.08989 * 109.47080 * 322.90267 * 11 10 8 13 13 C 1.53002 * 109.46895 * 82.91052 * 11 10 8 14 14 C 1.53005 * 109.46965 * 202.90376 * 11 10 8 15 15 N 1.46898 * 109.47195 * 55.13833 * 14 11 10 16 16 C 1.46896 * 111.00165 * 198.96498 * 15 14 11 17 17 C 1.46903 * 110.99781 * 75.01134 * 15 14 11 18 18 C 1.50698 * 109.47210 * 190.00091 * 17 15 14 19 19 O 1.21290 * 120.00198 * 0.02562 * 18 17 15 20 20 N 1.34780 * 120.00111 * 180.02562 * 18 17 15 21 21 C 1.37089 * 120.00210 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99887 * 359.97438 * 21 20 18 23 23 C 1.38946 * 120.00298 * 179.97438 * 21 20 18 24 24 N 1.31409 * 120.00193 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00434 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.46957 * 0.02562 * 25 23 21 27 27 H 1.48495 * 109.47067 * 119.99678 * 25 23 21 28 28 H 1.48495 * 109.47416 * 240.00045 * 25 23 21 29 29 C 1.38217 * 119.99829 * 179.97438 * 2 1 3 30 30 H 1.08992 * 109.46812 * 270.01430 * 1 2 3 31 31 H 1.08997 * 109.47024 * 30.01825 * 1 2 3 32 32 H 1.09007 * 109.46930 * 150.01902 * 1 2 3 33 33 H 1.07999 * 119.99759 * 359.97438 * 3 2 1 34 34 H 1.08002 * 119.99908 * 179.97438 * 4 3 2 35 35 H 1.08002 * 119.99443 * 180.26019 * 5 4 3 36 36 H 1.09000 * 109.46881 * 149.72997 * 7 6 5 37 37 H 1.08995 * 109.46582 * 29.72991 * 7 6 5 38 38 H 0.97008 * 119.99911 * 359.97438 * 10 8 7 39 39 H 1.08993 * 109.47539 * 59.99386 * 13 11 10 40 40 H 1.08996 * 109.47076 * 180.02562 * 13 11 10 41 41 H 1.09001 * 109.46409 * 299.99526 * 13 11 10 42 42 H 1.08998 * 109.47084 * 295.14029 * 14 11 10 43 43 H 1.08993 * 109.47151 * 175.14066 * 14 11 10 44 44 H 1.09000 * 109.47364 * 289.98089 * 16 15 14 45 45 H 1.08999 * 109.47146 * 49.98328 * 16 15 14 46 46 H 1.09002 * 109.47210 * 169.98035 * 16 15 14 47 47 H 1.08999 * 109.47243 * 310.00270 * 17 15 14 48 48 H 1.08999 * 109.47207 * 70.00148 * 17 15 14 49 49 H 0.97006 * 119.99903 * 359.97438 * 20 18 17 50 50 H 0.96999 * 120.00579 * 179.97438 * 24 23 21 51 51 H 1.07998 * 120.00560 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 -0.0001 0.0038 6 6 3.5807 -1.1970 -0.0010 7 6 4.3342 -2.5021 -0.0012 8 6 4.5844 -2.9376 -1.4221 9 8 4.1893 -2.2555 -2.3438 10 7 5.2472 -4.0849 -1.6685 11 6 5.4899 -4.5084 -3.0498 12 1 4.6265 -4.2548 -3.6646 13 6 6.7297 -3.7942 -3.5918 14 6 5.7158 -6.0213 -3.0871 15 7 4.5751 -6.7023 -2.4602 16 6 4.9303 -8.0731 -2.0695 17 6 3.4047 -6.6944 -3.3479 18 6 2.1951 -7.1755 -2.5887 19 8 2.2978 -7.4933 -1.4226 20 7 0.9991 -7.2528 -3.2053 21 6 -0.1011 -7.6910 -2.5148 22 1 -0.0095 -7.9747 -1.4767 23 6 -1.3342 -7.7701 -3.1503 24 7 -1.4459 -7.4245 -4.4132 25 14 -2.8333 -8.3679 -2.2096 26 1 -2.4446 -8.6923 -0.8135 27 1 -3.8685 -7.3033 -2.2000 28 1 -3.3784 -9.5826 -2.8671 29 6 2.1981 -1.1970 0.0005 30 1 -0.3633 0.0003 1.0276 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3633 -0.8902 -0.5136 33 1 1.6583 2.1326 -0.0004 34 1 4.1205 2.1326 -0.0010 35 1 5.3517 0.0000 0.0076 36 1 3.7454 -3.2616 0.5132 37 1 5.2869 -2.3716 0.5119 38 1 5.5635 -4.6303 -0.9313 39 1 7.5931 -4.0479 -2.9768 40 1 6.9101 -4.1090 -4.6196 41 1 6.5687 -2.7165 -3.5652 42 1 6.6284 -6.2659 -2.5436 43 1 5.8105 -6.3490 -4.1223 44 1 5.0584 -8.6840 -2.9631 45 1 5.8608 -8.0596 -1.5021 46 1 4.1351 -8.4928 -1.4533 47 1 3.2283 -5.6807 -3.7077 48 1 3.5874 -7.3543 -4.1960 49 1 0.9169 -6.9983 -4.1378 50 1 -2.3066 -7.4800 -4.8570 51 1 1.6581 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716042352.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:26 Heat of formation + Delta-G solvation = -74.600765 kcal Electronic energy + Delta-G solvation = -30735.692718 eV Core-core repulsion = 26633.611006 eV Total energy + Delta-G solvation = -4102.081712 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.12947 -40.41060 -39.83625 -38.23107 -36.11488 -35.50805 -34.43677 -33.28378 -32.99641 -31.94683 -29.60417 -28.65672 -27.95280 -27.66032 -26.61382 -23.94651 -23.18434 -22.51085 -21.63348 -21.00884 -20.84856 -19.85752 -18.21132 -17.74494 -17.52182 -17.11420 -16.74126 -16.62464 -16.53107 -15.98169 -15.71273 -15.61324 -15.40403 -15.23253 -15.02650 -14.77562 -14.47727 -14.17998 -14.05671 -13.81753 -13.70934 -13.54471 -13.40487 -13.19604 -13.08033 -12.90785 -12.84633 -12.76382 -12.73780 -12.61072 -12.45606 -12.36334 -12.12788 -11.93791 -11.85634 -11.69863 -11.45821 -10.85513 -10.27945 -10.01231 -9.91826 -9.68624 -9.47014 -9.20011 -8.47264 -5.96055 0.43311 0.50377 1.34942 1.39597 1.54024 1.76754 2.04562 2.26354 2.34497 2.77631 2.94099 3.19452 3.37226 3.70718 3.83181 3.89288 4.04627 4.08690 4.18417 4.21271 4.24255 4.32855 4.39331 4.43290 4.46541 4.50387 4.58627 4.61263 4.63489 4.66526 4.72823 4.76932 4.79091 4.82803 4.84799 4.96679 5.09029 5.19346 5.24775 5.29269 5.31160 5.39980 5.56508 5.64987 5.66194 5.72278 5.87579 6.06312 6.15364 6.22215 6.59231 6.72155 7.12203 7.41643 7.55470 8.10783 8.70676 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007176 B = 0.003462 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3900.933520 B = 8087.010972 C =11175.038583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.100 4.100 3 C -0.132 4.132 4 C -0.120 4.120 5 C -0.123 4.123 6 C -0.071 4.071 7 C -0.099 4.099 8 C 0.512 3.488 9 O -0.585 6.585 10 N -0.698 5.698 11 C 0.145 3.855 12 H 0.050 0.950 13 C -0.150 4.150 14 C 0.049 3.951 15 N -0.528 5.528 16 C 0.028 3.972 17 C 0.058 3.942 18 C 0.444 3.556 19 O -0.608 6.608 20 N -0.578 5.578 21 C -0.329 4.329 22 H 0.080 0.920 23 C -0.015 4.015 24 N -0.923 5.923 25 Si 0.992 3.008 26 H -0.271 1.271 27 H -0.273 1.273 28 H -0.270 1.270 29 C -0.134 4.134 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.142 0.858 34 H 0.148 0.852 35 H 0.138 0.862 36 H 0.104 0.896 37 H 0.135 0.865 38 H 0.413 0.587 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.042 0.958 42 H 0.111 0.889 43 H 0.064 0.936 44 H 0.025 0.975 45 H 0.092 0.908 46 H 0.054 0.946 47 H 0.088 0.912 48 H 0.066 0.934 49 H 0.393 0.607 50 H 0.277 0.723 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.891 12.238 5.715 21.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.100 4.100 3 C -0.150 4.150 4 C -0.138 4.138 5 C -0.141 4.141 6 C -0.072 4.072 7 C -0.139 4.139 8 C 0.300 3.700 9 O -0.465 6.465 10 N -0.349 5.349 11 C 0.039 3.961 12 H 0.068 0.932 13 C -0.208 4.208 14 C -0.078 4.078 15 N -0.253 5.253 16 C -0.119 4.119 17 C -0.073 4.073 18 C 0.231 3.769 19 O -0.494 6.494 20 N -0.216 5.216 21 C -0.459 4.459 22 H 0.098 0.902 23 C -0.215 4.215 24 N -0.565 5.565 25 Si 0.816 3.184 26 H -0.195 1.195 27 H -0.198 1.198 28 H -0.195 1.195 29 C -0.152 4.152 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.160 0.840 34 H 0.166 0.834 35 H 0.156 0.844 36 H 0.122 0.878 37 H 0.153 0.847 38 H 0.249 0.751 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.061 0.939 42 H 0.129 0.871 43 H 0.082 0.918 44 H 0.043 0.957 45 H 0.110 0.890 46 H 0.072 0.928 47 H 0.106 0.894 48 H 0.084 0.916 49 H 0.226 0.774 50 H 0.086 0.914 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 16.410 12.724 6.133 21.652 hybrid contribution -1.023 -1.059 -0.827 1.688 sum 15.387 11.665 5.306 20.025 Atomic orbital electron populations 1.20825 0.90355 1.02928 1.03014 1.20175 0.97061 0.93284 0.99477 1.21309 0.94837 0.97688 1.01119 1.21438 0.94385 0.98724 0.99275 1.21216 1.00579 0.91795 1.00471 1.19496 0.93294 0.94880 0.99493 1.20712 1.03607 0.95726 0.93822 1.20858 0.76666 0.80925 0.91587 1.90686 1.52486 1.55618 1.47705 1.45747 1.57234 1.22834 1.09085 1.20949 0.98160 0.93752 0.83192 0.93200 1.22034 0.96832 0.99806 1.02166 1.22571 0.93664 0.91809 0.99792 1.61479 1.03894 1.18630 1.41251 1.22450 1.02084 0.87569 0.99837 1.21733 0.90029 1.01634 0.93930 1.20696 0.84965 0.83064 0.88129 1.90442 1.85645 1.54856 1.18428 1.41980 1.07307 1.58815 1.13466 1.19687 0.87382 1.42064 0.96745 0.90155 1.26056 1.01407 0.97240 0.96754 1.69689 1.27100 1.48522 1.11140 0.84880 0.77238 0.78161 0.78131 1.19549 1.19825 1.19475 1.21055 0.94467 0.97841 1.01882 0.89980 0.90144 0.92845 0.84042 0.83445 0.84428 0.87765 0.84705 0.75073 0.90206 0.90346 0.93911 0.87060 0.91830 0.95666 0.88978 0.92756 0.89425 0.91593 0.77416 0.91399 0.87885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.59 10.01 71.24 0.71 -1.88 16 2 C -0.10 -2.65 5.88 -19.86 -0.12 -2.77 16 3 C -0.13 -2.95 9.70 22.27 0.22 -2.74 16 4 C -0.12 -2.53 10.05 22.27 0.22 -2.31 16 5 C -0.12 -2.81 9.70 22.27 0.22 -2.60 16 6 C -0.07 -1.90 4.37 -19.86 -0.09 -1.99 16 7 C -0.10 -2.27 5.83 29.10 0.17 -2.10 16 8 C 0.51 14.71 7.76 87.66 0.68 15.39 16 9 O -0.58 -22.04 15.71 -3.03 -0.05 -22.09 16 10 N -0.70 -16.47 4.83 -442.54 -2.14 -18.60 16 11 C 0.14 3.34 2.55 44.99 0.11 3.46 16 12 H 0.05 1.52 6.41 -2.39 -0.02 1.51 16 13 C -0.15 -2.67 9.46 71.98 0.68 -1.99 16 14 C 0.05 0.99 4.54 86.31 0.39 1.38 16 15 N -0.53 -15.46 4.16 -927.07 -3.86 -19.32 16 16 C 0.03 0.79 9.19 127.69 1.17 1.97 16 17 C 0.06 2.08 5.28 85.56 0.45 2.53 16 18 C 0.44 21.48 7.54 87.66 0.66 22.14 16 19 O -0.61 -33.00 13.89 -3.06 -0.04 -33.04 16 20 N -0.58 -30.69 5.29 -306.99 -1.62 -32.31 16 21 C -0.33 -19.07 9.68 84.04 0.81 -18.26 16 22 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 23 C -0.02 -0.84 5.50 84.93 0.47 -0.37 16 24 N -0.92 -51.38 13.05 21.66 0.28 -51.10 16 25 Si 0.99 43.82 29.55 68.60 2.03 45.85 16 26 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 27 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 28 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 29 C -0.13 -4.03 9.36 22.27 0.21 -3.82 16 30 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.08 1.52 8.09 -2.39 -0.02 1.50 16 32 H 0.05 1.35 8.09 -2.38 -0.02 1.33 16 33 H 0.14 2.39 8.06 -2.91 -0.02 2.36 16 34 H 0.15 2.16 8.06 -2.91 -0.02 2.13 16 35 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 36 H 0.10 2.40 8.09 -2.39 -0.02 2.38 16 37 H 0.14 2.01 8.08 -2.39 -0.02 1.99 16 38 H 0.41 7.94 8.58 -92.70 -0.80 7.15 16 39 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.04 0.96 8.12 -2.39 -0.02 0.94 16 42 H 0.11 1.58 7.75 -2.39 -0.02 1.57 16 43 H 0.06 1.15 8.01 -2.39 -0.02 1.13 16 44 H 0.02 0.65 8.06 -2.39 -0.02 0.63 16 45 H 0.09 1.92 7.83 -2.39 -0.02 1.91 16 46 H 0.05 2.02 6.01 -2.39 -0.01 2.01 16 47 H 0.09 3.14 6.67 -2.39 -0.02 3.12 16 48 H 0.07 2.11 8.06 -2.39 -0.02 2.09 16 49 H 0.39 20.22 7.90 -92.70 -0.73 19.48 16 50 H 0.28 14.38 8.31 -92.71 -0.77 13.61 16 51 H 0.10 3.33 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -77.12 422.06 1.00 -76.13 By element: Atomic # 1 Polarization: 49.02 SS G_CDS: -0.59 Total: 48.43 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 6.98 Total: 6.05 kcal Atomic # 7 Polarization: -114.00 SS G_CDS: -7.33 Total: -121.33 kcal Atomic # 8 Polarization: -55.04 SS G_CDS: -0.09 Total: -55.13 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -77.12 1.00 -76.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716042352.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.528 kcal (2) G-P(sol) polarization free energy of solvation -77.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds