Wall clock time and date at job start Wed Apr 1 2020 04:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38256 * 119.99730 * 2 1 4 4 C 1.38214 * 120.00164 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99661 * 0.02562 * 4 3 2 6 6 C 1.38212 * 120.00042 * 359.97438 * 5 4 3 7 7 C 1.38211 * 120.00152 * 179.72671 * 2 1 3 8 8 C 1.50698 * 119.99834 * 359.97438 * 7 2 1 9 9 C 1.50698 * 109.47251 * 85.00549 * 8 7 2 10 10 O 1.21279 * 119.99783 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00308 * 180.02562 * 9 8 7 12 12 C 1.46490 * 120.00068 * 179.97438 * 11 9 8 13 13 H 1.09003 * 109.47238 * 324.99818 * 12 11 9 14 14 C 1.53007 * 109.47383 * 84.99803 * 12 11 9 15 15 C 1.52999 * 109.47138 * 204.99773 * 12 11 9 16 16 N 1.46896 * 109.47121 * 55.00086 * 15 12 11 17 17 C 1.46903 * 111.00195 * 66.04512 * 16 15 12 18 18 C 1.46905 * 111.00250 * 190.00283 * 16 15 12 19 19 C 1.50695 * 109.47110 * 170.00209 * 18 16 15 20 20 O 1.21293 * 120.00612 * 359.97438 * 19 18 16 21 21 N 1.34780 * 120.00027 * 180.02562 * 19 18 16 22 22 C 1.37092 * 120.00383 * 179.97438 * 21 19 18 23 23 H 1.08005 * 119.99940 * 0.02562 * 22 21 19 24 24 C 1.38950 * 120.00226 * 179.97438 * 22 21 19 25 25 N 1.31408 * 120.00329 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 119.99877 * 0.02562 * 24 22 21 27 27 H 1.48489 * 109.47694 * 89.99539 * 26 24 22 28 28 H 1.48507 * 109.46763 * 209.99572 * 26 24 22 29 29 H 1.48503 * 109.47172 * 329.98903 * 26 24 22 30 30 H 1.08999 * 109.47015 * 90.00126 * 1 2 3 31 31 H 1.09000 * 109.46646 * 209.99278 * 1 2 3 32 32 H 1.09000 * 109.47248 * 329.99996 * 1 2 3 33 33 H 1.07999 * 120.00073 * 0.02562 * 3 2 1 34 34 H 1.07991 * 120.00008 * 180.02562 * 4 3 2 35 35 H 1.08002 * 119.99635 * 179.97438 * 5 4 3 36 36 H 1.08000 * 119.99941 * 179.97438 * 6 5 4 37 37 H 1.09004 * 109.46683 * 204.99819 * 8 7 2 38 38 H 1.09000 * 109.47263 * 324.99722 * 8 7 2 39 39 H 0.96999 * 119.99704 * 359.97438 * 11 9 8 40 40 H 1.09003 * 109.46921 * 59.99821 * 14 12 11 41 41 H 1.08997 * 109.47247 * 179.97438 * 14 12 11 42 42 H 1.09000 * 109.46956 * 300.00041 * 14 12 11 43 43 H 1.09001 * 109.47492 * 175.00063 * 15 12 11 44 44 H 1.09000 * 109.47051 * 294.99907 * 15 12 11 45 45 H 1.09004 * 109.46905 * 59.99856 * 17 16 15 46 46 H 1.08992 * 109.47302 * 179.97438 * 17 16 15 47 47 H 1.08995 * 109.47076 * 300.00337 * 17 16 15 48 48 H 1.09005 * 109.46790 * 289.99914 * 18 16 15 49 49 H 1.08999 * 109.47367 * 49.99496 * 18 16 15 50 50 H 0.97000 * 119.99912 * 359.97438 * 21 19 18 51 51 H 0.96996 * 120.00419 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2718 0.0001 0.0005 6 6 3.5807 -1.1969 0.0005 7 6 2.1981 -1.1969 0.0057 8 6 1.4447 -2.5020 0.0125 9 6 1.0858 -2.8822 -1.4008 10 8 1.4096 -2.1639 -2.3228 11 7 0.4041 -4.0200 -1.6402 12 6 0.0548 -4.3894 -3.0141 13 1 -0.1645 -3.4889 -3.5879 14 6 1.2288 -5.1305 -3.6573 15 6 -1.1761 -5.2980 -3.0007 16 7 -2.2679 -4.6327 -2.2775 17 6 -2.7244 -3.4364 -2.9976 18 6 -3.3819 -5.5597 -2.0372 19 6 -4.3678 -4.9254 -1.0903 20 8 -4.1626 -3.8111 -0.6576 21 7 -5.4773 -5.5969 -0.7232 22 6 -6.3740 -5.0202 0.1386 23 1 -6.1916 -4.0276 0.5232 24 6 -7.5181 -5.7123 0.5165 25 7 -8.3774 -5.1597 1.3430 26 14 -7.8340 -7.4288 -0.1491 27 1 -7.2267 -8.4324 0.7613 28 1 -9.2977 -7.6633 -0.2386 29 1 -7.2291 -7.5552 -1.4995 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3632 -0.8901 0.5137 32 1 -0.3634 0.8900 0.5138 33 1 1.6583 2.1327 0.0004 34 1 4.1203 2.1327 0.0010 35 1 5.3518 0.0002 0.0005 36 1 4.1208 -2.1321 0.0001 37 1 2.0698 -3.2801 0.4505 38 1 0.5342 -2.3928 0.6018 39 1 0.1448 -4.5943 -0.9028 40 1 1.4482 -6.0310 -3.0835 41 1 0.9687 -5.4057 -4.6793 42 1 2.1057 -4.4832 -3.6668 43 1 -1.4892 -5.5007 -4.0249 44 1 -0.9296 -6.2362 -2.5037 45 1 -3.0834 -3.7225 -3.9863 46 1 -3.5332 -2.9636 -2.4406 47 1 -1.8956 -2.7360 -3.1006 48 1 -3.8779 -5.7841 -2.9816 49 1 -2.9994 -6.4818 -1.5996 50 1 -5.6414 -6.4883 -1.0689 51 1 -9.1759 -5.6429 1.6072 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716504468.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:34 Heat of formation + Delta-G solvation = -65.641866 kcal Electronic energy + Delta-G solvation = -30635.517782 eV Core-core repulsion = 26533.824557 eV Total energy + Delta-G solvation = -4101.693225 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.22040 -40.49460 -39.84211 -38.26416 -36.10817 -35.49049 -34.27842 -33.71704 -33.17466 -31.95971 -29.61698 -28.81210 -28.00042 -27.47986 -26.52911 -24.04819 -23.13584 -22.40312 -21.36808 -21.20101 -21.04886 -20.13017 -18.18652 -17.74009 -17.45282 -16.94729 -16.86983 -16.74628 -16.55769 -16.11436 -15.75367 -15.54712 -15.48702 -15.14598 -14.93533 -14.78071 -14.44311 -14.31209 -14.07752 -13.97251 -13.80466 -13.63559 -13.47525 -13.24354 -13.15042 -12.92259 -12.87808 -12.79178 -12.68475 -12.63012 -12.42318 -12.37400 -11.96559 -11.84316 -11.77705 -11.68366 -11.43822 -10.85355 -10.32545 -10.19778 -9.91782 -9.67130 -9.46427 -9.20451 -8.38440 -5.98666 0.44783 0.51870 1.31442 1.37341 1.45831 1.76989 2.01460 2.25064 2.34177 2.63841 2.93910 3.17667 3.28632 3.71998 3.80886 3.91994 4.06967 4.09365 4.13594 4.16891 4.23249 4.33141 4.35139 4.41825 4.45465 4.47882 4.55310 4.55689 4.59490 4.71474 4.74219 4.78041 4.80795 4.82460 4.83918 4.93398 5.07148 5.17732 5.20352 5.29348 5.31250 5.56078 5.58678 5.62905 5.65924 5.76336 5.91741 6.02285 6.16092 6.18036 6.63468 6.71444 6.92991 7.40727 7.44651 8.02947 8.79328 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013763 B = 0.002357 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.918136 B =11874.762528 C =13277.922117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.089 4.089 3 C -0.136 4.136 4 C -0.125 4.125 5 C -0.133 4.133 6 C -0.116 4.116 7 C -0.080 4.080 8 C -0.105 4.105 9 C 0.518 3.482 10 O -0.582 6.582 11 N -0.701 5.701 12 C 0.147 3.853 13 H 0.058 0.942 14 C -0.151 4.151 15 C 0.049 3.951 16 N -0.530 5.530 17 C 0.032 3.968 18 C 0.054 3.946 19 C 0.452 3.548 20 O -0.604 6.604 21 N -0.594 5.594 22 C -0.323 4.323 23 H 0.054 0.946 24 C -0.018 4.018 25 N -0.937 5.937 26 Si 0.965 3.035 27 H -0.256 1.256 28 H -0.279 1.279 29 H -0.231 1.231 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.130 0.870 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.136 0.864 37 H 0.128 0.872 38 H 0.107 0.893 39 H 0.412 0.588 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.042 0.958 43 H 0.065 0.935 44 H 0.108 0.892 45 H 0.032 0.968 46 H 0.052 0.948 47 H 0.057 0.943 48 H 0.076 0.924 49 H 0.128 0.872 50 H 0.389 0.611 51 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.322 -2.720 -7.967 25.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.089 4.089 3 C -0.154 4.154 4 C -0.143 4.143 5 C -0.151 4.151 6 C -0.134 4.134 7 C -0.081 4.081 8 C -0.144 4.144 9 C 0.305 3.695 10 O -0.462 6.462 11 N -0.352 5.352 12 C 0.042 3.958 13 H 0.076 0.924 14 C -0.210 4.210 15 C -0.079 4.079 16 N -0.254 5.254 17 C -0.117 4.117 18 C -0.077 4.077 19 C 0.240 3.760 20 O -0.487 6.487 21 N -0.236 5.236 22 C -0.452 4.452 23 H 0.072 0.928 24 C -0.216 4.216 25 N -0.578 5.578 26 Si 0.785 3.215 27 H -0.180 1.180 28 H -0.204 1.204 29 H -0.154 1.154 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.148 0.852 34 H 0.160 0.840 35 H 0.162 0.838 36 H 0.154 0.846 37 H 0.146 0.854 38 H 0.125 0.875 39 H 0.248 0.752 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.061 0.939 43 H 0.083 0.917 44 H 0.126 0.874 45 H 0.051 0.949 46 H 0.070 0.930 47 H 0.076 0.924 48 H 0.094 0.906 49 H 0.146 0.854 50 H 0.224 0.776 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 24.667 -1.335 -7.774 25.897 hybrid contribution -1.479 -0.716 -0.393 1.690 sum 23.188 -2.051 -8.167 24.669 Atomic orbital electron populations 1.20807 0.91531 1.03220 1.01600 1.19939 0.96057 0.93555 0.99353 1.21251 0.95146 0.97527 1.01463 1.21424 0.93996 0.99203 0.99658 1.21407 1.00983 0.92210 1.00525 1.21243 0.93113 0.99342 0.99657 1.19373 0.94143 0.93525 1.01011 1.20747 1.02763 0.96655 0.94242 1.20724 0.77138 0.80394 0.91224 1.90672 1.55710 1.52558 1.47233 1.45812 1.56007 1.23741 1.09657 1.20934 0.94172 0.97584 0.83147 0.92372 1.22052 0.96851 1.00427 1.01652 1.22582 0.89345 0.97484 0.98497 1.61463 1.08731 1.06457 1.48740 1.22320 1.00441 0.93299 0.95613 1.21865 0.91338 0.96387 0.98098 1.20940 0.83089 0.86769 0.85228 1.90532 1.77042 1.22050 1.59120 1.42048 1.20542 1.17603 1.43452 1.18965 1.01546 1.01934 1.22777 0.92773 1.26117 0.94730 1.04084 0.96703 1.69808 1.12497 1.40629 1.34903 0.85367 0.78752 0.77013 0.80380 1.18021 1.20447 1.15391 0.92806 0.91548 0.90594 0.85166 0.83975 0.83813 0.84592 0.85429 0.87486 0.75185 0.90460 0.90255 0.93871 0.91678 0.87375 0.94917 0.92965 0.92376 0.90620 0.85373 0.77578 0.91291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.01 9.61 71.24 0.68 -2.33 16 2 C -0.09 -2.29 5.88 -19.86 -0.12 -2.41 16 3 C -0.14 -3.10 9.70 22.27 0.22 -2.88 16 4 C -0.12 -2.44 10.05 22.27 0.22 -2.22 16 5 C -0.13 -2.52 10.05 22.27 0.22 -2.30 16 6 C -0.12 -2.42 9.68 22.27 0.22 -2.20 16 7 C -0.08 -1.93 4.37 -19.87 -0.09 -2.01 16 8 C -0.10 -2.19 5.33 29.10 0.16 -2.04 16 9 C 0.52 13.20 7.79 87.66 0.68 13.88 16 10 O -0.58 -19.45 15.70 -3.03 -0.05 -19.50 16 11 N -0.70 -14.78 4.80 -442.54 -2.12 -16.90 16 12 C 0.15 2.92 2.35 45.00 0.11 3.03 16 13 H 0.06 1.52 6.23 -2.39 -0.01 1.50 16 14 C -0.15 -2.32 9.48 71.98 0.68 -1.64 16 15 C 0.05 0.84 4.52 86.30 0.39 1.23 16 16 N -0.53 -14.07 4.22 -927.05 -3.92 -17.98 16 17 C 0.03 0.97 8.96 127.69 1.14 2.12 16 18 C 0.05 1.47 5.45 85.55 0.47 1.94 16 19 C 0.45 19.24 7.47 87.65 0.66 19.89 16 20 O -0.60 -31.92 13.91 -3.07 -0.04 -31.96 16 21 N -0.59 -26.84 5.09 -306.98 -1.56 -28.41 16 22 C -0.32 -18.49 10.16 84.04 0.85 -17.64 16 23 H 0.05 3.72 7.39 -2.91 -0.02 3.70 16 24 C -0.02 -0.99 5.50 84.93 0.47 -0.53 16 25 N -0.94 -56.12 13.96 21.66 0.30 -55.82 16 26 Si 0.96 37.87 27.74 68.60 1.90 39.77 16 27 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 28 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 29 H -0.23 -7.51 6.52 99.48 0.65 -6.86 16 30 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.07 1.74 6.02 -2.39 -0.01 1.73 16 32 H 0.08 1.74 8.09 -2.39 -0.02 1.72 16 33 H 0.13 2.53 8.06 -2.91 -0.02 2.50 16 34 H 0.14 1.98 8.06 -2.92 -0.02 1.96 16 35 H 0.14 1.89 8.06 -2.91 -0.02 1.86 16 36 H 0.14 2.21 8.06 -2.91 -0.02 2.18 16 37 H 0.13 1.83 8.05 -2.39 -0.02 1.81 16 38 H 0.11 2.27 6.16 -2.39 -0.01 2.25 16 39 H 0.41 7.38 8.60 -92.71 -0.80 6.59 16 40 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.07 0.96 8.12 -2.39 -0.02 0.94 16 44 H 0.11 1.33 7.93 -2.39 -0.02 1.31 16 45 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 46 H 0.05 2.09 5.82 -2.39 -0.01 2.07 16 47 H 0.06 1.81 6.58 -2.39 -0.02 1.80 16 48 H 0.08 1.74 8.12 -2.38 -0.02 1.72 16 49 H 0.13 2.59 7.93 -2.39 -0.02 2.57 16 50 H 0.39 14.39 5.76 -92.71 -0.53 13.85 16 51 H 0.28 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -82.25 414.56 1.03 -81.22 By element: Atomic # 1 Polarization: 46.12 SS G_CDS: -0.44 Total: 45.68 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: 6.96 Total: 3.89 kcal Atomic # 7 Polarization: -111.80 SS G_CDS: -7.30 Total: -119.10 kcal Atomic # 8 Polarization: -51.37 SS G_CDS: -0.09 Total: -51.46 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 1.90 Total: 39.77 kcal Total: -82.25 1.03 -81.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716504468.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.576 kcal (2) G-P(sol) polarization free energy of solvation -82.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds