Wall clock time and date at job start Wed Apr 1 2020 04:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38258 * 119.99741 * 2 1 4 4 C 1.38214 * 119.99771 * 179.97438 * 3 2 1 5 5 C 1.38261 * 120.00025 * 0.02562 * 4 3 2 6 6 C 1.38213 * 120.00082 * 359.97438 * 5 4 3 7 7 C 1.38209 * 119.99935 * 179.72199 * 2 1 3 8 8 C 1.50697 * 120.00241 * 0.02562 * 7 2 1 9 9 C 1.50699 * 109.47354 * 84.99683 * 8 7 2 10 10 O 1.21277 * 120.00069 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99927 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99839 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.47122 * 34.99595 * 12 11 9 14 14 C 1.52995 * 109.46944 * 274.99450 * 12 11 9 15 15 C 1.53000 * 109.47031 * 154.99585 * 12 11 9 16 16 N 1.46902 * 109.47157 * 304.99795 * 15 12 11 17 17 C 1.46890 * 110.99913 * 293.95539 * 16 15 12 18 18 C 1.46897 * 110.99879 * 170.00039 * 16 15 12 19 19 C 1.50703 * 109.47241 * 190.00038 * 18 16 15 20 20 O 1.21291 * 119.99815 * 0.02562 * 19 18 16 21 21 N 1.34777 * 119.99982 * 179.97438 * 19 18 16 22 22 C 1.37094 * 119.99616 * 179.97438 * 21 19 18 23 23 H 1.07995 * 120.00594 * 0.02562 * 22 21 19 24 24 C 1.38951 * 119.99864 * 180.02562 * 22 21 19 25 25 N 1.31417 * 119.99978 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 120.00305 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46471 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47110 * 119.99940 * 26 24 22 29 29 H 1.48492 * 109.46894 * 240.00040 * 26 24 22 30 30 H 1.09001 * 109.46953 * 89.99972 * 1 2 3 31 31 H 1.09000 * 109.47318 * 209.99570 * 1 2 3 32 32 H 1.09000 * 109.47161 * 330.00200 * 1 2 3 33 33 H 1.07997 * 120.00249 * 359.97438 * 3 2 1 34 34 H 1.07998 * 119.99641 * 179.97438 * 4 3 2 35 35 H 1.08002 * 120.00315 * 179.97438 * 5 4 3 36 36 H 1.07997 * 120.00092 * 179.97438 * 6 5 4 37 37 H 1.08996 * 109.47418 * 204.99840 * 8 7 2 38 38 H 1.09002 * 109.47180 * 324.99602 * 8 7 2 39 39 H 0.97000 * 120.00443 * 359.97438 * 11 9 8 40 40 H 1.09005 * 109.47367 * 180.02562 * 14 12 11 41 41 H 1.09002 * 109.47330 * 300.00018 * 14 12 11 42 42 H 1.09005 * 109.47172 * 60.00074 * 14 12 11 43 43 H 1.09000 * 109.46985 * 64.99931 * 15 12 11 44 44 H 1.09004 * 109.46750 * 184.99670 * 15 12 11 45 45 H 1.09000 * 109.47273 * 60.00153 * 17 16 15 46 46 H 1.09002 * 109.47168 * 180.02562 * 17 16 15 47 47 H 1.09007 * 109.47301 * 299.99961 * 17 16 15 48 48 H 1.09007 * 109.47215 * 310.00330 * 18 16 15 49 49 H 1.09001 * 109.47290 * 69.99938 * 18 16 15 50 50 H 0.96996 * 119.99916 * 0.02562 * 21 19 18 51 51 H 0.97005 * 120.00074 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2718 0.0000 0.0005 6 6 3.5807 -1.1970 0.0005 7 6 2.1981 -1.1969 0.0058 8 6 1.4446 -2.5020 0.0116 9 6 1.0867 -2.8817 -1.4022 10 8 1.4118 -2.1635 -2.3238 11 7 0.4052 -4.0194 -1.6424 12 6 0.0578 -4.3888 -3.0169 13 1 0.8562 -4.0764 -3.6900 14 6 -1.2466 -3.6963 -3.4168 15 6 -0.1215 -5.9055 -3.1075 16 7 1.0893 -6.5723 -2.6101 17 6 2.2365 -6.3030 -3.4870 18 6 0.8702 -8.0169 -2.4586 19 6 2.0350 -8.6273 -1.7226 20 8 2.9568 -7.9276 -1.3595 21 7 2.0520 -9.9505 -1.4669 22 6 3.1119 -10.5057 -0.7978 23 1 3.9331 -9.8829 -0.4752 24 6 3.1297 -11.8700 -0.5346 25 7 2.1307 -12.6280 -0.9276 26 14 4.5736 -12.6265 0.3777 27 1 5.5606 -11.5671 0.7075 28 1 4.0902 -13.2607 1.6304 29 1 5.2180 -13.6531 -0.4801 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6583 2.1327 -0.0004 34 1 4.1204 2.1327 0.0001 35 1 5.3518 0.0000 0.0005 36 1 4.1207 -2.1322 0.0001 37 1 2.0694 -3.2803 0.4497 38 1 0.5337 -2.3931 0.6002 39 1 0.1455 -4.5940 -0.9054 40 1 -1.5054 -3.9714 -4.4393 41 1 -2.0450 -4.0086 -2.7437 42 1 -1.1188 -2.6157 -3.3522 43 1 -0.9768 -6.2071 -2.5029 44 1 -0.2923 -6.1897 -4.1459 45 1 2.4199 -5.2292 -3.5260 46 1 3.1194 -6.8087 -3.0960 47 1 2.0216 -6.6715 -4.4901 48 1 -0.0464 -8.1882 -1.8940 49 1 0.7815 -8.4762 -3.4432 50 1 1.3146 -10.5100 -1.7570 51 1 2.1430 -13.5804 -0.7435 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716504469.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:41 Heat of formation + Delta-G solvation = -48.431880 kcal Electronic energy + Delta-G solvation = -30428.218830 eV Core-core repulsion = 26327.271886 eV Total energy + Delta-G solvation = -4100.946944 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.27455 -39.16047 -38.49676 -36.93460 -34.67474 -33.77882 -33.44465 -32.33245 -31.27336 -31.01445 -28.01572 -27.97770 -26.91690 -26.68012 -24.82604 -22.93965 -22.23205 -21.48551 -20.43890 -20.11170 -19.16661 -17.86118 -17.14180 -16.65632 -16.19400 -16.08621 -15.83940 -15.28240 -15.05529 -14.71657 -14.67660 -14.46232 -14.11358 -13.97016 -13.60461 -13.53585 -13.39095 -13.19929 -13.01934 -12.84313 -12.70997 -12.48573 -12.15714 -12.06841 -12.04179 -11.87686 -11.76846 -11.51538 -11.37168 -11.25787 -11.04950 -10.98366 -10.95269 -10.71538 -10.36052 -10.24459 -9.79646 -9.50591 -8.94874 -8.83457 -8.63640 -8.47360 -8.00186 -7.88933 -6.43892 -3.84589 1.27569 1.35248 2.76940 3.14547 3.24575 3.25465 3.32387 3.76417 3.88206 3.94929 4.22596 4.55410 4.70489 4.74833 4.86104 4.90454 4.96150 5.06497 5.07203 5.15224 5.20855 5.23015 5.26495 5.36765 5.42421 5.50609 5.51108 5.56255 5.60148 5.63202 5.68349 5.70127 5.72420 5.92236 5.94646 5.97485 5.99731 6.07573 6.08669 6.25846 6.40314 6.45581 6.55700 6.58050 6.60573 6.95847 7.22702 7.33749 7.53423 7.65535 8.04608 8.36889 8.59744 9.16403 9.52552 10.04303 10.73873 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012513 B = 0.002266 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.104417 B =12355.121647 C =13927.485854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.071 4.071 3 C -0.124 4.124 4 C -0.120 4.120 5 C -0.126 4.126 6 C -0.101 4.101 7 C -0.062 4.062 8 C -0.108 4.108 9 C 0.520 3.480 10 O -0.541 6.541 11 N -0.707 5.707 12 C 0.148 3.852 13 H 0.086 0.914 14 C -0.161 4.161 15 C 0.042 3.958 16 N -0.514 5.514 17 C 0.022 3.978 18 C 0.045 3.955 19 C 0.444 3.556 20 O -0.576 6.576 21 N -0.565 5.565 22 C -0.297 4.297 23 H 0.103 0.897 24 C 0.021 3.979 25 N -0.902 5.902 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.282 1.282 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.405 0.595 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.079 0.921 44 H 0.045 0.955 45 H 0.060 0.940 46 H 0.095 0.905 47 H 0.014 0.986 48 H 0.087 0.913 49 H 0.047 0.953 50 H 0.392 0.608 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.712 21.265 -0.408 22.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.071 4.071 3 C -0.142 4.142 4 C -0.138 4.138 5 C -0.144 4.144 6 C -0.119 4.119 7 C -0.062 4.062 8 C -0.148 4.148 9 C 0.306 3.694 10 O -0.418 6.418 11 N -0.358 5.358 12 C 0.043 3.957 13 H 0.104 0.896 14 C -0.220 4.220 15 C -0.087 4.087 16 N -0.238 5.238 17 C -0.126 4.126 18 C -0.087 4.087 19 C 0.229 3.771 20 O -0.460 6.460 21 N -0.202 5.202 22 C -0.427 4.427 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.207 1.207 29 H -0.208 1.208 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.239 0.761 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.097 0.903 44 H 0.064 0.936 45 H 0.079 0.921 46 H 0.114 0.886 47 H 0.032 0.968 48 H 0.105 0.895 49 H 0.065 0.935 50 H 0.225 0.775 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.772 22.221 -0.348 23.233 hybrid contribution -0.074 -1.599 -0.270 1.624 sum -6.846 20.622 -0.618 21.738 Atomic orbital electron populations 1.20846 0.91575 1.02407 1.02496 1.19667 0.95802 0.92618 0.99003 1.20933 0.94276 0.97185 1.01761 1.21083 0.94296 0.97920 1.00491 1.21079 0.99787 0.92471 1.01059 1.21056 0.93513 0.98412 0.98951 1.19133 0.93448 0.93135 1.00482 1.20728 1.02115 0.96540 0.95426 1.20364 0.77230 0.80897 0.90877 1.90693 1.53619 1.51629 1.45902 1.45804 1.57387 1.23518 1.09109 1.20902 0.97312 0.93222 0.84294 0.89580 1.22145 0.97015 1.01359 1.01447 1.22504 0.93772 0.93202 0.99193 1.61568 1.03548 1.09092 1.49564 1.22554 0.95527 1.01573 0.92965 1.21884 0.99127 0.88068 0.99586 1.19727 0.88770 0.82967 0.85591 1.90490 1.38428 1.60746 1.56376 1.41880 1.21344 1.06160 1.50800 1.19731 0.99667 0.91669 1.31598 0.87891 1.25262 0.98410 0.96221 0.98115 1.69621 1.31279 1.06424 1.47026 0.85812 0.80795 0.78984 0.78836 1.19222 1.20746 1.20795 0.90986 0.91520 0.91740 0.86368 0.86372 0.86193 0.85945 0.87608 0.87994 0.76072 0.91798 0.92380 0.91968 0.90302 0.93648 0.92113 0.88631 0.96798 0.89459 0.93510 0.77538 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 9.61 36.01 0.35 -0.69 16 2 C -0.07 -0.79 5.88 -104.62 -0.62 -1.41 16 3 C -0.12 -1.28 9.70 -39.58 -0.38 -1.67 16 4 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 5 C -0.13 -1.38 10.05 -39.58 -0.40 -1.78 16 6 C -0.10 -1.23 9.68 -39.58 -0.38 -1.61 16 7 C -0.06 -0.74 4.37 -104.62 -0.46 -1.20 16 8 C -0.11 -1.16 5.33 -29.04 -0.15 -1.31 16 9 C 0.52 6.74 7.79 -10.99 -0.09 6.66 16 10 O -0.54 -8.91 15.70 5.56 0.09 -8.83 16 11 N -0.71 -8.15 4.80 -53.81 -0.26 -8.41 16 12 C 0.15 1.69 2.35 -67.93 -0.16 1.53 16 13 H 0.09 1.18 6.23 -51.93 -0.32 0.86 16 14 C -0.16 -1.51 9.48 37.16 0.35 -1.16 16 15 C 0.04 0.48 4.52 -3.82 -0.02 0.47 16 16 N -0.51 -7.90 4.22 -244.37 -1.03 -8.93 16 17 C 0.02 0.35 8.96 60.06 0.54 0.89 16 18 C 0.04 0.75 5.45 -4.98 -0.03 0.72 16 19 C 0.44 10.06 7.47 -10.98 -0.08 9.98 16 20 O -0.58 -14.96 13.91 5.55 0.08 -14.88 16 21 N -0.57 -13.92 5.29 -10.96 -0.06 -13.98 16 22 C -0.30 -8.11 9.68 -14.93 -0.14 -8.26 16 23 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 24 C 0.02 0.56 5.50 -17.46 -0.10 0.47 16 25 N -0.90 -24.20 13.05 55.50 0.72 -23.47 16 26 Si 0.93 20.80 29.55 -169.99 -5.02 15.78 16 27 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 28 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 29 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.52 6.02 -51.93 -0.31 0.21 16 32 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 33 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 36 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.11 1.09 8.05 -51.93 -0.42 0.67 16 38 H 0.10 0.83 6.16 -51.93 -0.32 0.51 16 39 H 0.40 4.21 8.60 -40.82 -0.35 3.86 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.79 7.93 -51.93 -0.41 0.38 16 44 H 0.05 0.49 8.12 -51.93 -0.42 0.07 16 45 H 0.06 0.97 6.58 -51.93 -0.34 0.62 16 46 H 0.10 1.91 5.82 -51.93 -0.30 1.61 16 47 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 48 H 0.09 1.29 7.93 -51.93 -0.41 0.88 16 49 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 50 H 0.39 9.25 7.90 -40.82 -0.32 8.92 16 51 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 417.68 15.07 6.29 6.29 Total: -1.00 -33.01 417.68 -9.45 -42.46 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -8.09 Total: 13.94 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -2.17 Total: 0.02 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.62 Total: -54.79 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: 0.16 Total: -23.71 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -33.01 -9.45 -42.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716504469.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.970 kcal (2) G-P(sol) polarization free energy of solvation -33.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds