Wall clock time and date at job start Wed Apr 1 2020 04:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38258 * 119.99741 * 2 1 4 4 C 1.38214 * 119.99771 * 179.97438 * 3 2 1 5 5 C 1.38261 * 120.00025 * 0.02562 * 4 3 2 6 6 C 1.38213 * 120.00082 * 359.97438 * 5 4 3 7 7 C 1.38209 * 119.99935 * 179.72199 * 2 1 3 8 8 C 1.50697 * 120.00241 * 0.02562 * 7 2 1 9 9 C 1.50699 * 109.47354 * 84.99683 * 8 7 2 10 10 O 1.21277 * 120.00069 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99927 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99839 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.47122 * 34.99595 * 12 11 9 14 14 C 1.52995 * 109.46944 * 274.99450 * 12 11 9 15 15 C 1.53000 * 109.47031 * 154.99585 * 12 11 9 16 16 N 1.46902 * 109.47157 * 304.99795 * 15 12 11 17 17 C 1.46890 * 110.99913 * 293.95539 * 16 15 12 18 18 C 1.46897 * 110.99879 * 170.00039 * 16 15 12 19 19 C 1.50703 * 109.47241 * 190.00038 * 18 16 15 20 20 O 1.21291 * 119.99815 * 0.02562 * 19 18 16 21 21 N 1.34777 * 119.99982 * 179.97438 * 19 18 16 22 22 C 1.37094 * 119.99616 * 179.97438 * 21 19 18 23 23 H 1.07995 * 120.00594 * 0.02562 * 22 21 19 24 24 C 1.38951 * 119.99864 * 180.02562 * 22 21 19 25 25 N 1.31417 * 119.99978 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 120.00305 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46471 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47110 * 119.99940 * 26 24 22 29 29 H 1.48492 * 109.46894 * 240.00040 * 26 24 22 30 30 H 1.09001 * 109.46953 * 89.99972 * 1 2 3 31 31 H 1.09000 * 109.47318 * 209.99570 * 1 2 3 32 32 H 1.09000 * 109.47161 * 330.00200 * 1 2 3 33 33 H 1.07997 * 120.00249 * 359.97438 * 3 2 1 34 34 H 1.07998 * 119.99641 * 179.97438 * 4 3 2 35 35 H 1.08002 * 120.00315 * 179.97438 * 5 4 3 36 36 H 1.07997 * 120.00092 * 179.97438 * 6 5 4 37 37 H 1.08996 * 109.47418 * 204.99840 * 8 7 2 38 38 H 1.09002 * 109.47180 * 324.99602 * 8 7 2 39 39 H 0.97000 * 120.00443 * 359.97438 * 11 9 8 40 40 H 1.09005 * 109.47367 * 180.02562 * 14 12 11 41 41 H 1.09002 * 109.47330 * 300.00018 * 14 12 11 42 42 H 1.09005 * 109.47172 * 60.00074 * 14 12 11 43 43 H 1.09000 * 109.46985 * 64.99931 * 15 12 11 44 44 H 1.09004 * 109.46750 * 184.99670 * 15 12 11 45 45 H 1.09000 * 109.47273 * 60.00153 * 17 16 15 46 46 H 1.09002 * 109.47168 * 180.02562 * 17 16 15 47 47 H 1.09007 * 109.47301 * 299.99961 * 17 16 15 48 48 H 1.09007 * 109.47215 * 310.00330 * 18 16 15 49 49 H 1.09001 * 109.47290 * 69.99938 * 18 16 15 50 50 H 0.96996 * 119.99916 * 0.02562 * 21 19 18 51 51 H 0.97005 * 120.00074 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2718 0.0000 0.0005 6 6 3.5807 -1.1970 0.0005 7 6 2.1981 -1.1969 0.0058 8 6 1.4446 -2.5020 0.0116 9 6 1.0867 -2.8817 -1.4022 10 8 1.4118 -2.1635 -2.3238 11 7 0.4052 -4.0194 -1.6424 12 6 0.0578 -4.3888 -3.0169 13 1 0.8562 -4.0764 -3.6900 14 6 -1.2466 -3.6963 -3.4168 15 6 -0.1215 -5.9055 -3.1075 16 7 1.0893 -6.5723 -2.6101 17 6 2.2365 -6.3030 -3.4870 18 6 0.8702 -8.0169 -2.4586 19 6 2.0350 -8.6273 -1.7226 20 8 2.9568 -7.9276 -1.3595 21 7 2.0520 -9.9505 -1.4669 22 6 3.1119 -10.5057 -0.7978 23 1 3.9331 -9.8829 -0.4752 24 6 3.1297 -11.8700 -0.5346 25 7 2.1307 -12.6280 -0.9276 26 14 4.5736 -12.6265 0.3777 27 1 5.5606 -11.5671 0.7075 28 1 4.0902 -13.2607 1.6304 29 1 5.2180 -13.6531 -0.4801 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6583 2.1327 -0.0004 34 1 4.1204 2.1327 0.0001 35 1 5.3518 0.0000 0.0005 36 1 4.1207 -2.1322 0.0001 37 1 2.0694 -3.2803 0.4497 38 1 0.5337 -2.3931 0.6002 39 1 0.1455 -4.5940 -0.9054 40 1 -1.5054 -3.9714 -4.4393 41 1 -2.0450 -4.0086 -2.7437 42 1 -1.1188 -2.6157 -3.3522 43 1 -0.9768 -6.2071 -2.5029 44 1 -0.2923 -6.1897 -4.1459 45 1 2.4199 -5.2292 -3.5260 46 1 3.1194 -6.8087 -3.0960 47 1 2.0216 -6.6715 -4.4901 48 1 -0.0464 -8.1882 -1.8940 49 1 0.7815 -8.4762 -3.4432 50 1 1.3146 -10.5100 -1.7570 51 1 2.1430 -13.5804 -0.7435 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716504469.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:38 Heat of formation + Delta-G solvation = -70.631296 kcal Electronic energy + Delta-G solvation = -30429.181469 eV Core-core repulsion = 26327.271886 eV Total energy + Delta-G solvation = -4101.909583 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -41.21904 -40.40094 -39.81601 -38.23345 -36.08556 -35.46711 -34.28031 -33.25039 -33.15311 -31.95266 -29.48246 -28.79753 -27.99957 -27.45781 -26.63407 -24.11875 -23.16493 -22.40432 -21.37508 -21.05237 -20.93545 -19.82703 -18.19757 -17.74767 -17.43998 -17.03660 -16.79525 -16.57757 -16.52246 -16.17351 -15.78187 -15.61797 -15.46814 -15.15627 -15.06888 -14.78467 -14.38316 -14.09185 -13.98502 -13.80491 -13.63637 -13.59468 -13.40711 -13.21209 -13.11190 -12.88183 -12.87615 -12.76532 -12.68537 -12.62865 -12.42928 -12.36726 -12.11690 -11.84535 -11.75586 -11.69942 -11.44358 -10.85546 -10.25254 -9.96915 -9.91847 -9.67944 -9.45687 -9.20593 -8.44884 -5.92572 0.44403 0.51265 1.36799 1.42237 1.55714 1.76807 2.09667 2.28533 2.34535 2.76343 2.94137 3.22562 3.45163 3.71954 3.80626 3.92713 4.07743 4.11619 4.16768 4.20238 4.24157 4.31380 4.36301 4.44431 4.47981 4.54683 4.56298 4.58535 4.60042 4.71461 4.74699 4.80324 4.83045 4.84508 4.86462 4.95683 5.06560 5.16718 5.18883 5.30997 5.33166 5.43361 5.59134 5.62980 5.65412 5.75328 5.88969 6.06896 6.16230 6.19829 6.63898 6.71245 7.16409 7.40224 7.60720 8.17047 8.72654 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012513 B = 0.002266 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.104417 B =12355.121647 C =13927.485854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.085 4.085 3 C -0.131 4.131 4 C -0.125 4.125 5 C -0.138 4.138 6 C -0.127 4.127 7 C -0.080 4.080 8 C -0.104 4.104 9 C 0.518 3.482 10 O -0.581 6.581 11 N -0.701 5.701 12 C 0.148 3.852 13 H 0.059 0.941 14 C -0.151 4.151 15 C 0.047 3.953 16 N -0.526 5.526 17 C 0.032 3.968 18 C 0.058 3.942 19 C 0.442 3.558 20 O -0.614 6.614 21 N -0.576 5.576 22 C -0.327 4.327 23 H 0.077 0.923 24 C -0.014 4.014 25 N -0.921 5.921 26 Si 0.989 3.011 27 H -0.275 1.275 28 H -0.271 1.271 29 H -0.273 1.273 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.134 0.866 36 H 0.116 0.884 37 H 0.105 0.895 38 H 0.129 0.871 39 H 0.412 0.588 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.045 0.955 43 H 0.105 0.895 44 H 0.062 0.938 45 H 0.059 0.941 46 H 0.054 0.946 47 H 0.029 0.971 48 H 0.118 0.882 49 H 0.066 0.934 50 H 0.396 0.604 51 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.692 21.606 -0.225 23.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.085 4.085 3 C -0.149 4.149 4 C -0.143 4.143 5 C -0.156 4.156 6 C -0.145 4.145 7 C -0.080 4.080 8 C -0.143 4.143 9 C 0.306 3.694 10 O -0.461 6.461 11 N -0.352 5.352 12 C 0.043 3.957 13 H 0.077 0.923 14 C -0.209 4.209 15 C -0.080 4.080 16 N -0.251 5.251 17 C -0.116 4.116 18 C -0.073 4.073 19 C 0.230 3.770 20 O -0.500 6.500 21 N -0.214 5.214 22 C -0.457 4.457 23 H 0.095 0.905 24 C -0.213 4.213 25 N -0.562 5.562 26 Si 0.813 3.187 27 H -0.199 1.199 28 H -0.196 1.196 29 H -0.198 1.198 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.152 0.848 36 H 0.134 0.866 37 H 0.123 0.877 38 H 0.147 0.853 39 H 0.248 0.752 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.064 0.936 43 H 0.123 0.877 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.072 0.928 47 H 0.048 0.952 48 H 0.136 0.864 49 H 0.084 0.916 50 H 0.230 0.770 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.792 22.542 -0.167 24.196 hybrid contribution 0.550 -1.627 -0.362 1.755 sum -8.242 20.915 -0.529 22.487 Atomic orbital electron populations 1.20857 0.90040 1.03873 1.02212 1.20017 0.97144 0.92596 0.98727 1.21309 0.94640 0.97961 1.01014 1.21427 0.94630 0.98579 0.99655 1.21344 1.00721 0.92530 1.01027 1.21226 0.94153 0.98807 1.00329 1.19357 0.93563 0.94083 1.01016 1.20740 1.03165 0.96098 0.94318 1.20719 0.76658 0.80750 0.91307 1.90670 1.55287 1.52967 1.47214 1.45819 1.56714 1.23083 1.09571 1.20915 0.97600 0.93522 0.83656 0.92305 1.22048 0.96116 1.00001 1.02779 1.22587 0.92479 0.92392 1.00591 1.61488 1.04866 1.08497 1.50214 1.22318 0.94707 1.00935 0.93628 1.21767 0.97067 0.88553 0.99940 1.20825 0.89708 0.82132 0.84367 1.90479 1.40412 1.61489 1.57578 1.41942 1.21034 1.07077 1.51352 1.19634 1.00349 0.92232 1.33466 0.90517 1.25980 1.00765 0.96105 0.98480 1.69674 1.32328 1.06828 1.47372 0.84923 0.77746 0.77927 0.78072 1.19946 1.19590 1.19835 0.91977 0.90541 0.89849 0.84110 0.83944 0.84828 0.86628 0.87652 0.85342 0.75226 0.90355 0.90503 0.93573 0.87711 0.91973 0.92244 0.92756 0.95244 0.86407 0.91634 0.77037 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.86 9.61 71.24 0.68 -1.17 16 2 C -0.08 -1.84 5.88 -19.86 -0.12 -1.96 16 3 C -0.13 -2.59 9.70 22.27 0.22 -2.38 16 4 C -0.13 -2.45 10.05 22.27 0.22 -2.23 16 5 C -0.14 -3.07 10.05 22.27 0.22 -2.85 16 6 C -0.13 -3.23 9.68 22.27 0.22 -3.02 16 7 C -0.08 -1.94 4.37 -19.87 -0.09 -2.03 16 8 C -0.10 -2.21 5.33 29.10 0.16 -2.05 16 9 C 0.52 13.46 7.79 87.66 0.68 14.14 16 10 O -0.58 -19.64 15.70 -3.02 -0.05 -19.68 16 11 N -0.70 -15.46 4.80 -442.53 -2.12 -17.59 16 12 C 0.15 3.16 2.35 44.99 0.11 3.26 16 13 H 0.06 1.60 6.23 -2.39 -0.01 1.59 16 14 C -0.15 -2.47 9.48 71.98 0.68 -1.79 16 15 C 0.05 0.94 4.52 86.30 0.39 1.33 16 16 N -0.53 -15.35 4.22 -927.04 -3.92 -19.27 16 17 C 0.03 1.06 8.96 127.69 1.14 2.21 16 18 C 0.06 1.82 5.45 85.56 0.47 2.28 16 19 C 0.44 20.11 7.47 87.66 0.66 20.76 16 20 O -0.61 -32.78 13.91 -3.06 -0.04 -32.82 16 21 N -0.58 -28.66 5.29 -306.99 -1.62 -30.28 16 22 C -0.33 -18.25 9.68 84.04 0.81 -17.44 16 23 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 24 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 25 N -0.92 -48.96 13.05 21.66 0.28 -48.68 16 26 Si 0.99 42.66 29.55 68.60 2.03 44.68 16 27 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 28 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 29 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.08 1.06 6.02 -2.39 -0.01 1.04 16 32 H 0.08 1.02 8.09 -2.39 -0.02 1.00 16 33 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 34 H 0.14 1.99 8.06 -2.91 -0.02 1.96 16 35 H 0.13 2.43 8.06 -2.91 -0.02 2.40 16 36 H 0.12 2.92 8.06 -2.91 -0.02 2.90 16 37 H 0.11 2.21 8.05 -2.39 -0.02 2.20 16 38 H 0.13 1.94 6.16 -2.39 -0.01 1.92 16 39 H 0.41 7.88 8.60 -92.71 -0.80 7.08 16 40 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 41 H 0.08 0.98 8.14 -2.39 -0.02 0.97 16 42 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 43 H 0.10 1.62 7.93 -2.39 -0.02 1.60 16 44 H 0.06 1.10 8.12 -2.38 -0.02 1.08 16 45 H 0.06 1.93 6.58 -2.39 -0.02 1.92 16 46 H 0.05 2.25 5.82 -2.39 -0.01 2.23 16 47 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 48 H 0.12 3.05 7.93 -2.38 -0.02 3.03 16 49 H 0.07 1.87 8.12 -2.39 -0.02 1.85 16 50 H 0.40 18.64 7.90 -92.71 -0.73 17.91 16 51 H 0.28 13.76 8.31 -92.70 -0.77 12.99 16 Total: -1.00 -73.94 417.68 0.90 -73.04 By element: Atomic # 1 Polarization: 44.35 SS G_CDS: -0.58 Total: 43.78 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 6.92 Total: 6.82 kcal Atomic # 7 Polarization: -108.43 SS G_CDS: -7.38 Total: -115.81 kcal Atomic # 8 Polarization: -52.42 SS G_CDS: -0.09 Total: -52.51 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Total: -73.94 0.90 -73.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716504469.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.410 kcal (2) G-P(sol) polarization free energy of solvation -73.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds