Wall clock time and date at job start Wed Apr 1 2020 04:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38256 * 119.99730 * 2 1 4 4 C 1.38214 * 120.00164 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99661 * 0.02562 * 4 3 2 6 6 C 1.38212 * 120.00042 * 359.97438 * 5 4 3 7 7 C 1.38211 * 120.00152 * 179.72671 * 2 1 3 8 8 C 1.50698 * 119.99834 * 359.97438 * 7 2 1 9 9 C 1.50698 * 109.47251 * 85.00549 * 8 7 2 10 10 O 1.21287 * 120.00089 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00308 * 180.02562 * 9 8 7 12 12 C 1.46490 * 120.00068 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.47346 * 34.99949 * 12 11 9 14 14 C 1.53000 * 109.47284 * 274.99961 * 12 11 9 15 15 C 1.52999 * 109.47128 * 154.99901 * 12 11 9 16 16 H 1.09006 * 109.47014 * 294.99875 * 15 12 11 17 17 C 1.52998 * 109.47161 * 54.99969 * 15 12 11 18 18 N 1.46906 * 109.47370 * 175.00105 * 15 12 11 19 19 C 1.46897 * 111.00051 * 155.00141 * 18 15 12 20 20 C 1.50698 * 109.47023 * 179.97438 * 19 18 15 21 21 O 1.21294 * 119.99848 * 359.97438 * 20 19 18 22 22 N 1.34780 * 119.99999 * 179.97438 * 20 19 18 23 23 C 1.37098 * 119.99915 * 180.02562 * 22 20 19 24 24 H 1.08005 * 119.99995 * 0.02562 * 23 22 20 25 25 C 1.38945 * 119.99825 * 179.97438 * 23 22 20 26 26 N 1.31407 * 120.00261 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99845 * 179.97438 * 25 23 22 28 28 H 1.48509 * 109.47058 * 90.00379 * 27 25 23 29 29 H 1.48501 * 109.47161 * 210.00091 * 27 25 23 30 30 H 1.48495 * 109.47317 * 330.00361 * 27 25 23 31 31 H 1.08999 * 109.47015 * 90.00126 * 1 2 3 32 32 H 1.09000 * 109.46646 * 209.99278 * 1 2 3 33 33 H 1.09000 * 109.47248 * 329.99996 * 1 2 3 34 34 H 1.07999 * 120.00073 * 0.02562 * 3 2 1 35 35 H 1.07991 * 120.00008 * 180.02562 * 4 3 2 36 36 H 1.08002 * 119.99635 * 179.97438 * 5 4 3 37 37 H 1.08000 * 119.99941 * 179.97438 * 6 5 4 38 38 H 1.09004 * 109.46683 * 204.99819 * 8 7 2 39 39 H 1.09000 * 109.47263 * 324.99722 * 8 7 2 40 40 H 0.96999 * 119.99704 * 359.97438 * 11 9 8 41 41 H 1.09010 * 109.46943 * 299.99701 * 14 12 11 42 42 H 1.08997 * 109.47739 * 60.00061 * 14 12 11 43 43 H 1.08997 * 109.47365 * 180.02562 * 14 12 11 44 44 H 1.08993 * 109.47270 * 60.00301 * 17 15 12 45 45 H 1.08998 * 109.47362 * 180.02562 * 17 15 12 46 46 H 1.09001 * 109.47137 * 300.00156 * 17 15 12 47 47 H 1.00897 * 110.99751 * 31.04243 * 18 15 12 48 48 H 1.09006 * 109.46697 * 299.99881 * 19 18 15 49 49 H 1.08998 * 109.47304 * 59.99518 * 19 18 15 50 50 H 0.97001 * 119.99873 * 359.97438 * 22 20 19 51 51 H 0.96998 * 120.00498 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2718 0.0001 0.0005 6 6 3.5807 -1.1969 0.0005 7 6 2.1981 -1.1969 0.0057 8 6 1.4447 -2.5020 0.0125 9 6 1.0858 -2.8822 -1.4008 10 8 1.4096 -2.1639 -2.3229 11 7 0.4041 -4.0200 -1.6402 12 6 0.0548 -4.3894 -3.0141 13 1 0.8523 -4.0769 -3.6883 14 6 -1.2501 -3.6969 -3.4123 15 6 -0.1245 -5.9061 -3.1046 16 1 0.8286 -6.3970 -2.9075 17 6 -1.1558 -6.3604 -2.0698 18 7 -0.5907 -6.2647 -4.4508 19 6 -0.2233 -7.6473 -4.7842 20 6 -0.7177 -7.9785 -6.1688 21 8 -1.3176 -7.1448 -6.8140 22 7 -0.4932 -9.2010 -6.6900 23 6 -0.9426 -9.5020 -7.9498 24 1 -1.4760 -8.7594 -8.5247 25 6 -0.7107 -10.7621 -8.4874 26 7 -0.0613 -11.6655 -7.7881 27 14 -1.3236 -11.1726 -10.2036 28 1 -0.2762 -10.8284 -11.1987 29 1 -1.6275 -12.6237 -10.2868 30 1 -2.5539 -10.3919 -10.4898 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3632 -0.8901 0.5137 33 1 -0.3634 0.8900 0.5138 34 1 1.6583 2.1327 0.0004 35 1 4.1203 2.1327 0.0010 36 1 5.3518 0.0002 0.0005 37 1 4.1208 -2.1321 0.0001 38 1 2.0698 -3.2801 0.4505 39 1 0.5342 -2.3928 0.6018 40 1 0.1448 -4.5943 -0.9028 41 1 -2.0477 -4.0094 -2.7382 42 1 -1.1225 -2.6164 -3.3479 43 1 -1.5102 -3.9721 -4.4344 44 1 -2.1088 -5.8696 -2.2669 45 1 -1.2832 -7.4410 -2.1339 46 1 -0.8098 -6.0943 -1.0710 47 1 -0.2352 -5.6197 -5.1403 48 1 0.8611 -7.7533 -4.7501 49 1 -0.6777 -8.3278 -4.0641 50 1 -0.0132 -9.8675 -6.1741 51 1 0.1003 -12.5453 -8.1632 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717440478.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:38 Heat of formation + Delta-G solvation = -54.748974 kcal Electronic energy + Delta-G solvation = -29654.908806 eV Core-core repulsion = 25553.687933 eV Total energy + Delta-G solvation = -4101.220874 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -40.55236 -39.36840 -38.39648 -37.27223 -34.44600 -33.79066 -33.64107 -32.51234 -31.31808 -30.91392 -29.23811 -28.15887 -26.88887 -26.56453 -24.62196 -23.62792 -22.42300 -21.51227 -20.39708 -19.77674 -19.31076 -17.94580 -17.49894 -16.82935 -16.38671 -16.13342 -15.86330 -15.54519 -15.19144 -15.01420 -14.77248 -14.44907 -14.23692 -14.00389 -13.72126 -13.67664 -13.38817 -13.26634 -13.13397 -12.92061 -12.74175 -12.54746 -12.28680 -12.21707 -12.08696 -12.01215 -11.81253 -11.59537 -11.44017 -11.25631 -11.19244 -11.09258 -10.91337 -10.69483 -10.39383 -10.22044 -10.05919 -9.51139 -9.23697 -9.03702 -8.82620 -8.47118 -8.12184 -7.96467 -6.42001 -3.82783 1.07371 1.16037 2.47051 2.92726 3.17919 3.26626 3.32758 3.55792 3.90418 4.10048 4.29285 4.32934 4.49295 4.53752 4.66031 4.70162 4.75945 4.85015 4.87722 5.00754 5.08407 5.14079 5.15249 5.25021 5.31398 5.39356 5.41789 5.42254 5.53125 5.56531 5.58178 5.74288 5.77646 5.79649 5.89686 5.93066 5.94083 5.96777 6.16631 6.20790 6.26202 6.27159 6.37066 6.38451 6.43881 6.76173 7.15290 7.31824 7.55090 7.59434 8.05974 8.06475 8.60852 9.17684 9.53886 10.05272 10.75720 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024993 B = 0.001601 C = 0.001585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.051855 B =17482.312808 C =17664.114423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.068 4.068 3 C -0.122 4.122 4 C -0.117 4.117 5 C -0.126 4.126 6 C -0.103 4.103 7 C -0.067 4.067 8 C -0.106 4.106 9 C 0.514 3.486 10 O -0.527 6.527 11 N -0.725 5.725 12 C 0.142 3.858 13 H 0.085 0.915 14 C -0.156 4.156 15 C 0.076 3.924 16 H 0.047 0.953 17 C -0.143 4.143 18 N -0.656 5.656 19 C 0.051 3.949 20 C 0.441 3.559 21 O -0.582 6.582 22 N -0.564 5.564 23 C -0.299 4.299 24 H 0.103 0.897 25 C 0.022 3.978 26 N -0.902 5.902 27 Si 0.930 3.070 28 H -0.278 1.278 29 H -0.284 1.284 30 H -0.269 1.269 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.399 0.601 41 H 0.059 0.941 42 H 0.052 0.948 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.060 0.940 46 H 0.049 0.951 47 H 0.351 0.649 48 H 0.044 0.956 49 H 0.086 0.914 50 H 0.392 0.608 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.233 18.722 23.005 30.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.068 4.068 3 C -0.140 4.140 4 C -0.135 4.135 5 C -0.144 4.144 6 C -0.121 4.121 7 C -0.067 4.067 8 C -0.146 4.146 9 C 0.300 3.700 10 O -0.403 6.403 11 N -0.379 5.379 12 C 0.037 3.963 13 H 0.103 0.897 14 C -0.215 4.215 15 C -0.034 4.034 16 H 0.064 0.936 17 C -0.201 4.201 18 N -0.290 5.290 19 C -0.082 4.082 20 C 0.226 3.774 21 O -0.466 6.466 22 N -0.200 5.200 23 C -0.429 4.429 24 H 0.121 0.879 25 C -0.179 4.179 26 N -0.543 5.543 27 Si 0.757 3.243 28 H -0.204 1.204 29 H -0.209 1.209 30 H -0.194 1.194 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.119 0.881 39 H 0.123 0.877 40 H 0.235 0.765 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.099 0.901 44 H 0.088 0.912 45 H 0.079 0.921 46 H 0.067 0.933 47 H 0.172 0.828 48 H 0.062 0.938 49 H 0.105 0.895 50 H 0.225 0.775 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.474 19.433 22.032 29.716 hybrid contribution 0.981 -1.054 -0.342 1.480 sum 5.456 18.379 21.690 28.948 Atomic orbital electron populations 1.20872 0.91393 1.02492 1.02777 1.19693 0.95918 0.92602 0.98570 1.20982 0.94305 0.97332 1.01338 1.21118 0.94314 0.98027 1.00033 1.21072 0.99791 0.92481 1.01088 1.20970 0.93374 0.98249 0.99520 1.19088 0.93414 0.93070 1.01176 1.20726 1.02161 0.96544 0.95179 1.20489 0.77541 0.80932 0.91064 1.90747 1.52964 1.50786 1.45765 1.46191 1.58012 1.24308 1.09438 1.21056 0.98372 0.93778 0.83059 0.89652 1.22114 0.96256 0.99780 1.03312 1.21721 0.96940 0.93291 0.91490 0.93552 1.21878 0.99869 1.02197 0.96194 1.60191 1.63732 1.03173 1.01954 1.21732 0.98156 0.90980 0.97322 1.19784 0.85754 0.83877 0.87959 1.90529 1.45410 1.48388 1.62289 1.41859 1.50501 1.11568 1.16111 1.19709 1.33368 0.98285 0.91524 0.87900 1.25258 0.97151 0.95482 1.00046 1.69607 1.41042 1.05607 1.38083 0.85855 0.79247 0.77485 0.81690 1.20433 1.20929 1.19398 0.90732 0.91559 0.91547 0.86160 0.86206 0.86154 0.86242 0.88072 0.87725 0.76545 0.92194 0.92925 0.90067 0.91166 0.92075 0.93255 0.82823 0.93846 0.89548 0.77486 0.91888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 9.61 36.01 0.35 -0.55 16 2 C -0.07 -0.63 5.88 -104.62 -0.62 -1.25 16 3 C -0.12 -1.07 9.70 -39.58 -0.38 -1.45 16 4 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 5 C -0.13 -1.09 10.05 -39.58 -0.40 -1.49 16 6 C -0.10 -0.94 9.68 -39.58 -0.38 -1.33 16 7 C -0.07 -0.62 4.37 -104.62 -0.46 -1.08 16 8 C -0.11 -0.77 5.33 -29.04 -0.15 -0.92 16 9 C 0.51 5.31 7.79 -10.98 -0.09 5.23 16 10 O -0.53 -7.81 15.70 5.55 0.09 -7.72 16 11 N -0.73 -6.39 4.99 -53.81 -0.27 -6.65 16 12 C 0.14 1.59 2.30 -67.94 -0.16 1.43 16 13 H 0.09 1.14 7.58 -51.93 -0.39 0.74 16 14 C -0.16 -1.84 9.02 37.16 0.34 -1.50 16 15 C 0.08 0.88 2.66 -67.71 -0.18 0.70 16 16 H 0.05 0.52 7.80 -51.93 -0.40 0.12 16 17 C -0.14 -1.41 8.93 37.16 0.33 -1.07 16 18 N -0.66 -10.09 5.13 -107.99 -0.55 -10.65 16 19 C 0.05 0.87 5.96 -4.98 -0.03 0.84 16 20 C 0.44 10.31 7.82 -10.98 -0.09 10.23 16 21 O -0.58 -15.70 15.78 5.55 0.09 -15.62 16 22 N -0.56 -14.23 5.29 -10.96 -0.06 -14.29 16 23 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 24 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 25 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 26 N -0.90 -24.49 13.05 55.50 0.72 -23.77 16 27 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 28 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 29 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 30 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.41 6.02 -51.93 -0.31 0.09 16 33 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 34 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 36 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.10 0.51 8.05 -51.93 -0.42 0.09 16 39 H 0.10 0.53 6.16 -51.93 -0.32 0.21 16 40 H 0.40 2.43 6.58 -40.82 -0.27 2.17 16 41 H 0.06 0.64 6.57 -51.92 -0.34 0.30 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 1.09 7.17 -51.93 -0.37 0.71 16 44 H 0.07 0.74 6.56 -51.93 -0.34 0.40 16 45 H 0.06 0.65 7.45 -51.93 -0.39 0.26 16 46 H 0.05 0.34 6.29 -51.93 -0.33 0.01 16 47 H 0.35 5.76 7.62 -39.29 -0.30 5.46 16 48 H 0.04 0.68 8.06 -51.93 -0.42 0.26 16 49 H 0.09 1.36 7.44 -51.93 -0.39 0.97 16 50 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 51 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 414.44 15.07 6.25 6.25 Total: -1.00 -34.11 414.44 -9.09 -43.20 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: -7.78 Total: 14.78 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -2.56 Total: -1.61 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: -0.16 Total: -55.36 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: 0.17 Total: -23.34 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.11 -9.09 -43.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717440478.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.544 kcal (2) G-P(sol) polarization free energy of solvation -34.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds