Wall clock time and date at job start Wed Apr 1 2020 05:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21290 * 119.99727 * 2 1 4 4 N 1.34774 * 120.00325 * 180.02562 * 2 1 3 5 5 C 1.39950 * 120.00260 * 175.15131 * 4 2 1 6 6 C 1.38988 * 119.99898 * 326.91101 * 5 4 2 7 7 C 1.38219 * 120.22245 * 179.97438 * 6 5 4 8 8 C 1.38016 * 120.22399 * 0.02562 * 7 6 5 9 9 C 1.50702 * 120.00586 * 179.97438 * 8 7 6 10 10 C 1.39584 * 119.99301 * 359.97438 * 8 7 6 11 11 C 1.47861 * 120.10846 * 180.02562 * 10 8 7 12 12 O 1.21555 * 120.00298 * 354.17578 * 11 10 8 13 13 N 1.34779 * 120.00142 * 174.18236 * 11 10 8 14 14 C 1.46499 * 120.00196 * 179.97438 * 13 11 10 15 15 H 1.08998 * 109.46981 * 34.99326 * 14 13 11 16 16 C 1.53004 * 109.46740 * 274.99529 * 14 13 11 17 17 C 1.52994 * 109.47150 * 154.99790 * 14 13 11 18 18 C 1.53008 * 109.46883 * 294.99446 * 17 14 13 19 19 C 1.53007 * 109.46758 * 180.02562 * 18 17 14 20 20 N 1.46501 * 109.46627 * 180.02562 * 19 18 17 21 21 C 1.36938 * 119.99480 * 179.97438 * 20 19 18 22 22 H 1.07990 * 120.00435 * 359.97438 * 21 20 19 23 23 C 1.38816 * 119.99722 * 179.97438 * 21 20 19 24 24 N 1.31622 * 120.00194 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00039 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47121 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47210 * 119.99976 * 25 23 21 28 28 H 1.48502 * 109.47179 * 240.00356 * 25 23 21 29 29 C 1.38602 * 120.00193 * 147.18405 * 5 4 2 30 30 H 1.08998 * 109.46817 * 270.00076 * 1 2 3 31 31 H 1.08993 * 109.47079 * 30.00189 * 1 2 3 32 32 H 1.08996 * 109.46979 * 149.99958 * 1 2 3 33 33 H 0.97006 * 119.99968 * 355.15253 * 4 2 1 34 34 H 1.07996 * 119.89316 * 359.97438 * 6 5 4 35 35 H 1.07994 * 119.88774 * 179.97438 * 7 6 5 36 36 H 1.08994 * 109.47205 * 263.41486 * 9 8 7 37 37 H 1.09001 * 109.46823 * 23.41391 * 9 8 7 38 38 H 1.08996 * 109.47112 * 143.41085 * 9 8 7 39 39 H 0.97001 * 119.99755 * 359.97438 * 13 11 10 40 40 H 1.09005 * 109.46765 * 180.02562 * 16 14 13 41 41 H 1.08998 * 109.47217 * 299.99651 * 16 14 13 42 42 H 1.08998 * 109.46845 * 60.00356 * 16 14 13 43 43 H 1.08992 * 109.47645 * 54.99467 * 17 14 13 44 44 H 1.08996 * 109.47213 * 175.00089 * 17 14 13 45 45 H 1.08997 * 109.46979 * 299.99941 * 18 17 14 46 46 H 1.08996 * 109.46671 * 60.00311 * 18 17 14 47 47 H 1.09000 * 109.47008 * 300.00150 * 19 18 17 48 48 H 1.09001 * 109.47154 * 60.00185 * 19 18 17 49 49 H 0.96998 * 120.00309 * 0.02562 * 20 19 18 50 50 H 0.96998 * 120.00506 * 180.02562 * 24 23 21 51 51 H 1.08008 * 120.10643 * 0.02562 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 -0.0005 5 6 3.5767 -1.1692 -0.1030 6 6 4.2201 -0.1902 -0.8508 7 6 5.5984 -0.1876 -0.9547 8 6 6.3450 -1.1574 -0.3169 9 6 7.8474 -1.1503 -0.4339 10 6 5.7083 -2.1450 0.4365 11 6 6.5057 -3.1850 1.1213 12 8 7.7068 -3.2451 0.9439 13 7 5.9009 -4.0664 1.9422 14 6 6.6909 -5.0972 2.6202 15 1 7.6708 -4.6942 2.8761 16 6 6.8612 -6.3017 1.6923 17 6 5.9701 -5.5347 3.8968 18 6 5.9102 -4.3609 4.8765 19 6 5.1899 -4.7987 6.1535 20 7 5.1321 -3.6746 7.0912 21 6 4.5290 -3.8308 8.3107 22 1 4.0956 -4.7823 8.5809 23 6 4.4746 -2.7659 9.1995 24 7 5.0023 -1.6060 8.8699 25 14 3.6525 -2.9790 10.8632 26 1 3.1428 -4.3681 10.9892 27 1 4.6398 -2.7149 11.9406 28 1 2.5220 -2.0236 10.9828 29 6 4.3171 -2.1510 0.5367 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8899 -0.5138 32 1 -0.3633 -0.8899 -0.5138 33 1 1.6986 -2.0058 0.0701 34 1 3.6412 0.5711 -1.3525 35 1 6.0926 0.5755 -1.5375 36 1 8.1537 -1.8371 -1.2229 37 1 8.1881 -0.1436 -0.6761 38 1 8.2871 -1.4648 0.5125 39 1 4.9426 -4.0183 2.0840 40 1 7.4487 -7.0689 2.1970 41 1 5.8814 -6.7047 1.4365 42 1 7.3748 -5.9900 0.7829 43 1 4.9576 -5.8547 3.6510 44 1 6.5117 -6.3625 4.3544 45 1 6.9228 -4.0410 5.1224 46 1 5.3686 -3.5331 4.4189 47 1 4.1774 -5.1190 5.9078 48 1 5.7319 -5.6264 6.6108 49 1 5.5203 -2.8197 6.8481 50 1 4.9647 -0.8619 9.4911 51 1 3.8186 -2.9154 1.1143 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717697062.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:10 Heat of formation + Delta-G solvation = -48.246580 kcal Electronic energy + Delta-G solvation = -30069.486574 eV Core-core repulsion = 25968.547665 eV Total energy + Delta-G solvation = -4100.938909 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.02628 -40.10371 -38.43557 -36.78959 -35.31177 -34.83391 -32.95462 -32.02623 -31.82064 -30.48927 -29.91082 -29.32324 -26.52770 -25.66864 -24.26617 -23.06145 -22.13671 -21.84667 -20.84981 -20.60245 -20.27638 -18.35395 -17.59079 -17.01320 -16.60764 -16.14490 -16.00694 -15.68486 -15.19371 -14.90256 -14.69336 -14.51617 -14.35209 -13.95380 -13.87786 -13.80186 -13.54482 -13.37053 -13.06342 -12.98279 -12.85688 -12.63717 -12.43167 -12.26753 -12.13721 -12.07909 -11.91897 -11.65179 -11.31051 -11.15882 -10.86813 -10.80898 -10.57719 -10.45145 -10.40797 -10.28654 -9.98195 -9.68660 -9.65304 -9.26642 -9.05940 -8.86440 -8.28929 -6.90625 -5.75010 -3.04016 0.67193 0.97264 2.18856 2.64298 2.82290 3.08203 3.43462 3.48530 3.51312 3.64276 4.28811 4.45948 4.49912 4.58023 4.74934 4.76669 4.77913 4.95908 4.98127 5.04198 5.09683 5.14675 5.16654 5.41226 5.41612 5.47954 5.55332 5.58352 5.62178 5.63452 5.74744 5.78320 5.84632 5.89122 5.95888 6.05759 6.09590 6.11950 6.18495 6.22017 6.35838 6.40678 6.41351 6.52401 6.68529 6.86600 6.89801 6.96915 7.43160 7.70797 7.71406 8.15264 8.43766 9.54558 10.13800 10.47955 11.47929 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007183 B = 0.002749 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3897.269369 B =10184.484687 C =12634.514205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.510 3.490 3 O -0.525 6.525 4 N -0.674 5.674 5 C 0.130 3.870 6 C -0.092 4.092 7 C -0.112 4.112 8 C -0.035 4.035 9 C -0.120 4.120 10 C -0.119 4.119 11 C 0.561 3.439 12 O -0.531 6.531 13 N -0.717 5.717 14 C 0.141 3.859 15 H 0.091 0.909 16 C -0.161 4.161 17 C -0.123 4.123 18 C -0.126 4.126 19 C 0.154 3.846 20 N -0.735 5.735 21 C -0.240 4.240 22 H 0.070 0.930 23 C -0.015 4.015 24 N -0.933 5.933 25 Si 0.907 3.093 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.291 1.291 29 C -0.107 4.107 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.412 0.588 34 H 0.138 0.862 35 H 0.133 0.867 36 H 0.073 0.927 37 H 0.056 0.944 38 H 0.097 0.903 39 H 0.398 0.602 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.058 0.942 43 H 0.066 0.934 44 H 0.080 0.920 45 H 0.062 0.938 46 H 0.060 0.940 47 H 0.015 0.985 48 H 0.017 0.983 49 H 0.383 0.617 50 H 0.255 0.745 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.859 -3.574 -26.186 26.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.299 3.701 3 O -0.400 6.400 4 N -0.320 5.320 5 C 0.036 3.964 6 C -0.112 4.112 7 C -0.131 4.131 8 C -0.037 4.037 9 C -0.176 4.176 10 C -0.123 4.123 11 C 0.349 3.651 12 O -0.409 6.409 13 N -0.368 5.368 14 C 0.037 3.963 15 H 0.109 0.891 16 C -0.220 4.220 17 C -0.161 4.161 18 C -0.164 4.164 19 C 0.026 3.974 20 N -0.379 5.379 21 C -0.371 4.371 22 H 0.088 0.912 23 C -0.211 4.211 24 N -0.581 5.581 25 Si 0.738 3.262 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.219 1.219 29 C -0.128 4.128 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.102 0.898 33 H 0.248 0.752 34 H 0.155 0.845 35 H 0.150 0.850 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.115 0.885 39 H 0.234 0.766 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.098 0.902 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.033 0.967 48 H 0.035 0.965 49 H 0.217 0.783 50 H 0.065 0.935 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.728 -2.942 -26.156 26.584 hybrid contribution -1.272 -0.169 1.117 1.701 sum -5.000 -3.111 -25.039 25.722 Atomic orbital electron populations 1.21902 0.90477 1.05266 1.05494 1.21053 0.90998 0.83059 0.74978 1.90764 1.70522 1.31208 1.47498 1.43632 1.04994 1.10087 1.73314 1.17528 0.82878 0.97649 0.98304 1.21304 0.94805 0.98185 0.96896 1.20953 0.93076 0.98768 1.00273 1.20056 0.97121 0.92646 0.93871 1.21072 0.90096 1.01378 1.05032 1.19553 0.92571 0.98103 1.02047 1.18163 0.87213 0.80820 0.78902 1.90717 1.14317 1.72325 1.63553 1.46038 1.11755 1.32217 1.46821 1.21066 0.96187 0.87460 0.91555 0.89139 1.22169 1.01888 0.97717 1.00199 1.21852 1.00804 0.99346 0.94110 1.21741 1.01529 0.97289 0.95852 1.20641 0.96299 0.91614 0.88856 1.42397 1.69705 1.10335 1.15455 1.19279 1.28958 0.96684 0.92183 0.91184 1.24761 1.01670 0.95879 0.98801 1.69676 1.50379 1.01824 1.36262 0.86121 0.78717 0.77163 0.84221 1.20565 1.21838 1.21867 1.20978 0.92924 0.99771 0.99107 0.88179 0.88403 0.89816 0.75156 0.84455 0.84959 0.90832 0.92469 0.88473 0.76641 0.91507 0.92607 0.92247 0.91510 0.90187 0.91885 0.92110 0.96679 0.96499 0.78318 0.93549 0.85247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.80 10.31 36.01 0.37 -0.42 16 2 C 0.51 4.59 7.68 -10.99 -0.08 4.51 16 3 O -0.52 -7.10 14.75 5.55 0.08 -7.02 16 4 N -0.67 -5.15 5.34 -9.89 -0.05 -5.20 16 5 C 0.13 1.33 6.28 -83.74 -0.53 0.80 16 6 C -0.09 -1.01 8.65 -39.31 -0.34 -1.35 16 7 C -0.11 -1.18 9.65 -39.67 -0.38 -1.57 16 8 C -0.04 -0.41 5.92 -104.20 -0.62 -1.03 16 9 C -0.12 -1.34 8.73 36.01 0.31 -1.03 16 10 C -0.12 -1.41 5.87 -104.99 -0.62 -2.03 16 11 C 0.56 7.27 7.67 -12.32 -0.09 7.17 16 12 O -0.53 -8.14 12.98 5.32 0.07 -8.07 16 13 N -0.72 -7.91 4.48 -54.75 -0.25 -8.15 16 14 C 0.14 1.59 2.57 -67.93 -0.17 1.41 16 15 H 0.09 1.20 7.58 -51.93 -0.39 0.80 16 16 C -0.16 -1.54 9.48 37.16 0.35 -1.19 16 17 C -0.12 -1.42 4.75 -26.73 -0.13 -1.54 16 18 C -0.13 -2.00 5.22 -26.72 -0.14 -2.14 16 19 C 0.15 3.08 6.26 -4.04 -0.03 3.05 16 20 N -0.73 -19.14 5.60 -59.90 -0.34 -19.47 16 21 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 22 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 23 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 24 N -0.93 -28.87 13.06 55.49 0.72 -28.15 16 25 Si 0.91 22.67 29.55 -169.99 -5.02 17.64 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 29 C -0.11 -1.07 9.44 -38.98 -0.37 -1.43 16 30 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 33 H 0.41 1.67 8.82 -40.82 -0.36 1.31 16 34 H 0.14 1.54 6.37 -52.49 -0.33 1.20 16 35 H 0.13 1.11 8.05 -52.49 -0.42 0.69 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.53 8.04 -51.93 -0.42 0.12 16 38 H 0.10 1.30 5.83 -51.93 -0.30 1.00 16 39 H 0.40 3.67 6.67 -40.82 -0.27 3.40 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.06 0.99 7.75 -51.93 -0.40 0.58 16 47 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.38 10.58 7.67 -40.82 -0.31 10.26 16 50 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 51 H 0.13 0.97 6.45 -52.48 -0.34 0.63 16 LS Contribution 418.13 15.07 6.30 6.30 Total: -1.00 -36.76 418.13 -9.36 -46.12 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -8.18 Total: 10.33 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -2.70 Total: -4.33 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: 0.09 Total: -60.97 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: 0.15 Total: -15.09 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -36.76 -9.36 -46.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717697062.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.126 kcal (2) G-P(sol) polarization free energy of solvation -36.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds