Wall clock time and date at job start Wed Apr 1 2020 05:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21290 * 119.99727 * 2 1 4 4 N 1.34774 * 120.00325 * 180.02562 * 2 1 3 5 5 C 1.39950 * 120.00260 * 175.15131 * 4 2 1 6 6 C 1.38988 * 119.99898 * 326.91101 * 5 4 2 7 7 C 1.38219 * 120.22245 * 179.97438 * 6 5 4 8 8 C 1.38016 * 120.22399 * 0.02562 * 7 6 5 9 9 C 1.50702 * 120.00586 * 179.97438 * 8 7 6 10 10 C 1.39584 * 119.99301 * 359.97438 * 8 7 6 11 11 C 1.47861 * 120.10846 * 180.02562 * 10 8 7 12 12 O 1.21555 * 120.00298 * 354.17578 * 11 10 8 13 13 N 1.34779 * 120.00142 * 174.18236 * 11 10 8 14 14 C 1.46499 * 120.00196 * 179.97438 * 13 11 10 15 15 H 1.08998 * 109.46981 * 34.99326 * 14 13 11 16 16 C 1.53004 * 109.46740 * 274.99529 * 14 13 11 17 17 C 1.52994 * 109.47150 * 154.99790 * 14 13 11 18 18 C 1.53008 * 109.46883 * 294.99446 * 17 14 13 19 19 C 1.53007 * 109.46758 * 180.02562 * 18 17 14 20 20 N 1.46501 * 109.46627 * 180.02562 * 19 18 17 21 21 C 1.36938 * 119.99480 * 179.97438 * 20 19 18 22 22 H 1.07990 * 120.00435 * 359.97438 * 21 20 19 23 23 C 1.38816 * 119.99722 * 179.97438 * 21 20 19 24 24 N 1.31622 * 120.00194 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00039 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47121 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47210 * 119.99976 * 25 23 21 28 28 H 1.48502 * 109.47179 * 240.00356 * 25 23 21 29 29 C 1.38602 * 120.00193 * 147.18405 * 5 4 2 30 30 H 1.08998 * 109.46817 * 270.00076 * 1 2 3 31 31 H 1.08993 * 109.47079 * 30.00189 * 1 2 3 32 32 H 1.08996 * 109.46979 * 149.99958 * 1 2 3 33 33 H 0.97006 * 119.99968 * 355.15253 * 4 2 1 34 34 H 1.07996 * 119.89316 * 359.97438 * 6 5 4 35 35 H 1.07994 * 119.88774 * 179.97438 * 7 6 5 36 36 H 1.08994 * 109.47205 * 263.41486 * 9 8 7 37 37 H 1.09001 * 109.46823 * 23.41391 * 9 8 7 38 38 H 1.08996 * 109.47112 * 143.41085 * 9 8 7 39 39 H 0.97001 * 119.99755 * 359.97438 * 13 11 10 40 40 H 1.09005 * 109.46765 * 180.02562 * 16 14 13 41 41 H 1.08998 * 109.47217 * 299.99651 * 16 14 13 42 42 H 1.08998 * 109.46845 * 60.00356 * 16 14 13 43 43 H 1.08992 * 109.47645 * 54.99467 * 17 14 13 44 44 H 1.08996 * 109.47213 * 175.00089 * 17 14 13 45 45 H 1.08997 * 109.46979 * 299.99941 * 18 17 14 46 46 H 1.08996 * 109.46671 * 60.00311 * 18 17 14 47 47 H 1.09000 * 109.47008 * 300.00150 * 19 18 17 48 48 H 1.09001 * 109.47154 * 60.00185 * 19 18 17 49 49 H 0.96998 * 120.00309 * 0.02562 * 20 19 18 50 50 H 0.96998 * 120.00506 * 180.02562 * 24 23 21 51 51 H 1.08008 * 120.10643 * 0.02562 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 -0.0005 5 6 3.5767 -1.1692 -0.1030 6 6 4.2201 -0.1902 -0.8508 7 6 5.5984 -0.1876 -0.9547 8 6 6.3450 -1.1574 -0.3169 9 6 7.8474 -1.1503 -0.4339 10 6 5.7083 -2.1450 0.4365 11 6 6.5057 -3.1850 1.1213 12 8 7.7068 -3.2451 0.9439 13 7 5.9009 -4.0664 1.9422 14 6 6.6909 -5.0972 2.6202 15 1 7.6708 -4.6942 2.8761 16 6 6.8612 -6.3017 1.6923 17 6 5.9701 -5.5347 3.8968 18 6 5.9102 -4.3609 4.8765 19 6 5.1899 -4.7987 6.1535 20 7 5.1321 -3.6746 7.0912 21 6 4.5290 -3.8308 8.3107 22 1 4.0956 -4.7823 8.5809 23 6 4.4746 -2.7659 9.1995 24 7 5.0023 -1.6060 8.8699 25 14 3.6525 -2.9790 10.8632 26 1 3.1428 -4.3681 10.9892 27 1 4.6398 -2.7149 11.9406 28 1 2.5220 -2.0236 10.9828 29 6 4.3171 -2.1510 0.5367 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8899 -0.5138 32 1 -0.3633 -0.8899 -0.5138 33 1 1.6986 -2.0058 0.0701 34 1 3.6412 0.5711 -1.3525 35 1 6.0926 0.5755 -1.5375 36 1 8.1537 -1.8371 -1.2229 37 1 8.1881 -0.1436 -0.6761 38 1 8.2871 -1.4648 0.5125 39 1 4.9426 -4.0183 2.0840 40 1 7.4487 -7.0689 2.1970 41 1 5.8814 -6.7047 1.4365 42 1 7.3748 -5.9900 0.7829 43 1 4.9576 -5.8547 3.6510 44 1 6.5117 -6.3625 4.3544 45 1 6.9228 -4.0410 5.1224 46 1 5.3686 -3.5331 4.4189 47 1 4.1774 -5.1190 5.9078 48 1 5.7319 -5.6264 6.6108 49 1 5.5203 -2.8197 6.8481 50 1 4.9647 -0.8619 9.4911 51 1 3.8186 -2.9154 1.1143 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717697062.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:09 Heat of formation + Delta-G solvation = -73.262711 kcal Electronic energy + Delta-G solvation = -30070.571354 eV Core-core repulsion = 25968.547665 eV Total energy + Delta-G solvation = -4102.023690 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.84463 -40.97729 -39.30328 -37.93748 -36.59429 -36.02111 -34.33834 -33.22627 -32.77723 -31.72728 -30.68081 -30.41974 -27.36970 -27.17252 -25.25086 -24.68197 -23.07253 -22.68640 -22.29159 -21.54438 -21.13258 -19.20798 -19.08115 -18.32841 -17.49358 -17.07270 -16.80604 -16.62437 -16.49832 -16.14531 -15.89377 -15.49835 -15.39411 -15.37901 -15.16167 -14.76413 -14.61982 -14.51288 -14.28369 -13.80101 -13.54158 -13.45372 -13.34609 -13.17253 -13.10671 -13.06572 -12.89003 -12.83675 -12.80276 -12.46340 -12.36965 -12.20077 -12.04606 -11.86084 -11.70070 -11.49068 -11.36622 -11.09455 -10.95155 -10.62888 -10.18231 -9.94881 -9.09691 -9.01577 -7.96488 -5.26162 -0.21304 0.16190 1.46327 1.47554 1.47773 1.57953 1.87175 2.02316 2.20513 2.55111 2.77716 3.37489 3.56622 3.65898 3.72256 3.82615 3.93673 3.98993 4.10976 4.14368 4.28643 4.30005 4.37361 4.41833 4.54145 4.59502 4.65204 4.66591 4.69461 4.80640 4.83582 4.84376 4.86630 4.93431 4.99505 5.01785 5.10239 5.10574 5.13592 5.29123 5.33612 5.34872 5.39439 5.43127 5.50210 5.54645 5.62744 5.86683 6.25778 6.39025 6.52864 7.08839 7.20740 7.31164 8.08696 8.30246 9.27506 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007183 B = 0.002749 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3897.269369 B =10184.484687 C =12634.514205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.504 3.496 3 O -0.578 6.578 4 N -0.661 5.661 5 C 0.124 3.876 6 C -0.102 4.102 7 C -0.113 4.113 8 C -0.053 4.053 9 C -0.113 4.113 10 C -0.135 4.135 11 C 0.557 3.443 12 O -0.562 6.562 13 N -0.708 5.708 14 C 0.144 3.856 15 H 0.065 0.935 16 C -0.153 4.153 17 C -0.109 4.109 18 C -0.114 4.114 19 C 0.150 3.850 20 N -0.752 5.752 21 C -0.245 4.245 22 H 0.079 0.921 23 C -0.080 4.080 24 N -0.973 5.973 25 Si 0.976 3.024 26 H -0.262 1.262 27 H -0.294 1.294 28 H -0.292 1.292 29 C -0.102 4.102 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.116 0.884 33 H 0.431 0.569 34 H 0.133 0.867 35 H 0.150 0.850 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.409 0.591 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.044 0.956 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.044 0.956 46 H 0.055 0.945 47 H 0.028 0.972 48 H 0.020 0.980 49 H 0.371 0.629 50 H 0.251 0.749 51 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.040 -5.660 -26.522 28.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.295 3.705 3 O -0.457 6.457 4 N -0.309 5.309 5 C 0.029 3.971 6 C -0.123 4.123 7 C -0.131 4.131 8 C -0.054 4.054 9 C -0.170 4.170 10 C -0.139 4.139 11 C 0.345 3.655 12 O -0.442 6.442 13 N -0.360 5.360 14 C 0.040 3.960 15 H 0.084 0.916 16 C -0.211 4.211 17 C -0.147 4.147 18 C -0.152 4.152 19 C 0.024 3.976 20 N -0.394 5.394 21 C -0.377 4.377 22 H 0.097 0.903 23 C -0.271 4.271 24 N -0.624 5.624 25 Si 0.804 3.196 26 H -0.187 1.187 27 H -0.222 1.222 28 H -0.219 1.219 29 C -0.123 4.123 30 H 0.127 0.873 31 H 0.116 0.884 32 H 0.135 0.865 33 H 0.271 0.729 34 H 0.151 0.849 35 H 0.168 0.832 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.246 0.754 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.063 0.937 43 H 0.109 0.891 44 H 0.111 0.889 45 H 0.063 0.937 46 H 0.073 0.927 47 H 0.045 0.955 48 H 0.038 0.962 49 H 0.202 0.798 50 H 0.059 0.941 51 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -5.960 -5.127 -26.507 27.648 hybrid contribution -0.596 0.444 1.178 1.392 sum -6.555 -4.684 -25.329 26.579 Atomic orbital electron populations 1.21937 0.86824 1.06962 1.06501 1.21918 0.92709 0.82385 0.73518 1.90742 1.71844 1.33072 1.50018 1.43614 1.04015 1.10914 1.72340 1.17681 0.84233 0.97291 0.97850 1.21420 0.95063 0.98451 0.97339 1.21130 0.93056 0.98801 1.00125 1.20217 0.97361 0.93259 0.94583 1.20972 0.90035 1.02244 1.03703 1.19634 0.93446 0.98150 1.02636 1.18387 0.86962 0.81112 0.78994 1.90706 1.15636 1.73179 1.64712 1.45984 1.12271 1.31716 1.46045 1.21008 0.95012 0.88056 0.91961 0.91636 1.22088 1.02995 0.96965 0.99075 1.21758 1.02482 0.97621 0.92830 1.21604 0.99657 0.98902 0.95024 1.20863 0.97376 0.89925 0.89390 1.42690 1.69415 1.11375 1.15950 1.19718 1.28053 0.96822 0.93095 0.90349 1.25640 1.03050 0.95718 1.02737 1.69844 1.52348 1.02650 1.37512 0.85038 0.77342 0.77810 0.79367 1.18660 1.22162 1.21928 1.21159 0.92170 1.00141 0.98782 0.87278 0.88365 0.86515 0.72927 0.84927 0.83209 0.90743 0.90868 0.90924 0.75400 0.90269 0.90763 0.93692 0.89129 0.88935 0.93738 0.92672 0.95453 0.96166 0.79830 0.94061 0.82689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 10.31 71.24 0.73 -0.40 16 2 C 0.50 8.50 7.68 87.66 0.67 9.17 16 3 O -0.58 -15.78 14.75 -3.06 -0.05 -15.83 16 4 N -0.66 -8.98 5.34 -303.60 -1.62 -10.61 16 5 C 0.12 2.42 6.28 38.11 0.24 2.66 16 6 C -0.10 -2.25 8.65 22.45 0.19 -2.06 16 7 C -0.11 -2.39 9.65 22.21 0.21 -2.18 16 8 C -0.05 -1.25 5.92 -19.59 -0.12 -1.37 16 9 C -0.11 -2.63 8.73 71.24 0.62 -2.01 16 10 C -0.13 -3.20 5.87 -20.10 -0.12 -3.32 16 11 C 0.56 14.49 7.67 86.79 0.67 15.15 16 12 O -0.56 -17.85 12.98 -3.89 -0.05 -17.90 16 13 N -0.71 -14.83 4.48 -445.39 -1.99 -16.83 16 14 C 0.14 3.03 2.57 44.99 0.12 3.15 16 15 H 0.07 1.74 7.58 -2.39 -0.02 1.73 16 16 C -0.15 -2.60 9.48 71.98 0.68 -1.91 16 17 C -0.11 -2.24 4.75 30.59 0.15 -2.09 16 18 C -0.11 -3.49 5.22 30.60 0.16 -3.33 16 19 C 0.15 5.82 6.26 86.38 0.54 6.36 16 20 N -0.75 -39.07 5.60 -343.44 -1.92 -40.99 16 21 C -0.25 -13.87 9.99 84.03 0.84 -13.03 16 22 H 0.08 4.21 7.83 -2.92 -0.02 4.19 16 23 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 24 N -0.97 -61.04 13.06 21.65 0.28 -60.76 16 25 Si 0.98 46.43 29.55 68.60 2.03 48.45 16 26 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 27 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 28 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 29 C -0.10 -1.91 9.44 22.66 0.21 -1.70 16 30 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.12 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.43 2.31 8.82 -92.70 -0.82 1.49 16 34 H 0.13 3.04 6.37 -2.91 -0.02 3.02 16 35 H 0.15 2.48 8.05 -2.91 -0.02 2.46 16 36 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.07 1.39 8.04 -2.39 -0.02 1.37 16 38 H 0.07 2.07 5.83 -2.39 -0.01 2.06 16 39 H 0.41 6.65 6.67 -92.71 -0.62 6.03 16 40 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 41 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.05 1.74 7.75 -2.39 -0.02 1.73 16 47 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.37 20.81 7.67 -92.71 -0.71 20.10 16 50 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 51 H 0.16 1.95 6.45 -2.91 -0.02 1.93 16 Total: -1.00 -81.65 418.13 1.76 -79.88 By element: Atomic # 1 Polarization: 36.83 SS G_CDS: -1.18 Total: 35.64 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: 6.27 Total: -1.07 kcal Atomic # 7 Polarization: -123.93 SS G_CDS: -5.26 Total: -129.18 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -0.10 Total: -33.73 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.45 kcal Total: -81.65 1.76 -79.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717697062.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.620 kcal (2) G-P(sol) polarization free energy of solvation -81.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds