Wall clock time and date at job start Wed Apr 1 2020 05:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21287 * 119.99651 * 2 1 4 4 N 1.34767 * 119.99811 * 179.97438 * 2 1 3 5 5 C 1.39956 * 119.99968 * 174.23179 * 4 2 1 6 6 C 1.38993 * 120.00128 * 329.17083 * 5 4 2 7 7 C 1.38207 * 120.22666 * 180.27923 * 6 5 4 8 8 C 1.38027 * 120.22013 * 359.43985 * 7 6 5 9 9 C 1.50694 * 120.00188 * 180.25661 * 8 7 6 10 10 C 1.39576 * 119.99333 * 0.53747 * 8 7 6 11 11 C 1.47862 * 120.10744 * 179.72110 * 10 8 7 12 12 O 1.21548 * 120.00134 * 353.73271 * 11 10 8 13 13 N 1.34781 * 119.99510 * 173.73133 * 11 10 8 14 14 C 1.46501 * 119.99611 * 180.02562 * 13 11 10 15 15 H 1.09001 * 109.47340 * 324.99610 * 14 13 11 16 16 C 1.53004 * 109.47481 * 84.99882 * 14 13 11 17 17 C 1.53002 * 109.47053 * 204.99964 * 14 13 11 18 18 C 1.53002 * 109.46987 * 64.99666 * 17 14 13 19 19 C 1.53002 * 109.46987 * 179.97438 * 18 17 14 20 20 N 1.46502 * 109.47415 * 180.02562 * 19 18 17 21 21 C 1.36931 * 120.00327 * 180.02562 * 20 19 18 22 22 H 1.07995 * 120.00015 * 359.97438 * 21 20 19 23 23 C 1.38821 * 119.99802 * 179.97438 * 21 20 19 24 24 N 1.31615 * 119.99823 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99540 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46860 * 90.00111 * 25 23 21 27 27 H 1.48499 * 109.46735 * 209.99899 * 25 23 21 28 28 H 1.48496 * 109.47339 * 329.99918 * 25 23 21 29 29 C 1.38593 * 120.00082 * 149.15137 * 5 4 2 30 30 H 1.08995 * 109.47414 * 240.00675 * 1 2 3 31 31 H 1.09002 * 109.46978 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.47057 * 119.99667 * 1 2 3 33 33 H 0.97006 * 120.00189 * 354.23769 * 4 2 1 34 34 H 1.08000 * 119.88106 * 359.97438 * 6 5 4 35 35 H 1.07997 * 119.88883 * 179.70851 * 7 6 5 36 36 H 1.09000 * 109.47599 * 262.77111 * 9 8 7 37 37 H 1.09004 * 109.47191 * 22.76567 * 9 8 7 38 38 H 1.08999 * 109.47441 * 142.76721 * 9 8 7 39 39 H 0.97000 * 120.00202 * 359.97438 * 13 11 10 40 40 H 1.08997 * 109.47168 * 179.97438 * 16 14 13 41 41 H 1.09001 * 109.46783 * 300.00180 * 16 14 13 42 42 H 1.08997 * 109.46679 * 59.99861 * 16 14 13 43 43 H 1.08997 * 109.47117 * 184.99424 * 17 14 13 44 44 H 1.08991 * 109.47159 * 304.99794 * 17 14 13 45 45 H 1.08995 * 109.47582 * 300.00300 * 18 17 14 46 46 H 1.09006 * 109.47045 * 60.00538 * 18 17 14 47 47 H 1.09007 * 109.47069 * 299.99854 * 19 18 17 48 48 H 1.08991 * 109.47159 * 60.00128 * 19 18 17 49 49 H 0.97006 * 119.99417 * 359.97438 * 20 19 18 50 50 H 0.97003 * 119.99131 * 180.02562 * 24 23 21 51 51 H 1.07997 * 120.11217 * 359.97438 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5751 -1.1703 -0.1213 6 6 4.2115 -0.1709 -0.8479 7 6 5.5877 -0.1727 -0.9760 8 6 6.3402 -1.1606 -0.3736 9 6 7.8407 -1.1545 -0.5117 10 6 5.7107 -2.1684 0.3586 11 6 6.5139 -3.2314 0.9998 12 8 7.7106 -3.2950 0.7969 13 7 5.9189 -4.1299 1.8094 14 6 6.7148 -5.1827 2.4453 15 1 7.5083 -5.4977 1.7676 16 6 7.3318 -4.6454 3.7382 17 6 5.8153 -6.3777 2.7676 18 6 5.2974 -6.9921 1.4656 19 6 4.3984 -8.1874 1.7879 20 7 3.9030 -8.7761 0.5412 21 6 3.0738 -9.8651 0.5803 22 1 2.7853 -10.2903 1.5302 23 6 2.6040 -10.4225 -0.6010 24 7 2.9560 -9.9047 -1.7587 25 14 1.4722 -11.9077 -0.5475 26 1 0.0599 -11.4520 -0.4917 27 1 1.6787 -12.7315 -1.7657 28 1 1.7781 -12.7201 0.6572 29 6 4.3213 -2.1698 0.4830 30 1 -0.3634 -0.5137 0.8900 31 1 -0.3633 1.0277 -0.0005 32 1 -0.3633 -0.5138 -0.8900 33 1 1.6995 -2.0051 0.0852 34 1 3.6282 0.6070 -1.3181 35 1 6.0761 0.6039 -1.5458 36 1 8.1345 -1.8307 -1.3146 37 1 8.1802 -0.1452 -0.7444 38 1 8.2931 -1.4833 0.4239 39 1 4.9640 -4.0789 1.9717 40 1 7.9235 -5.4289 4.2114 41 1 7.9726 -3.7941 3.5085 42 1 6.5382 -4.3304 4.4158 43 1 6.3866 -7.1241 3.3195 44 1 4.9721 -6.0449 3.3728 45 1 4.7262 -6.2457 0.9136 46 1 6.1407 -7.3250 0.8603 47 1 4.9701 -8.9337 2.3396 48 1 3.5553 -7.8550 2.3933 49 1 4.1619 -8.3940 -0.3120 50 1 2.6274 -10.2940 -2.5841 51 1 3.8287 -2.9468 1.0486 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717697063.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:13 Heat of formation + Delta-G solvation = -49.120459 kcal Electronic energy + Delta-G solvation = -30038.181088 eV Core-core repulsion = 25937.204285 eV Total energy + Delta-G solvation = -4100.976803 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.03996 -40.11596 -38.43954 -36.79416 -35.32073 -34.84982 -32.95991 -32.03642 -31.83304 -30.49292 -29.92132 -29.33295 -26.53214 -25.68385 -24.27032 -23.07463 -22.13569 -21.85179 -20.86664 -20.60715 -20.26798 -18.34385 -17.61838 -17.03896 -16.61293 -16.11690 -16.03846 -15.65735 -15.19531 -14.93729 -14.71036 -14.51919 -14.39117 -13.92535 -13.86338 -13.80643 -13.56098 -13.36317 -13.06875 -13.02034 -12.87176 -12.65537 -12.44763 -12.28170 -12.13324 -12.08611 -11.93596 -11.65509 -11.32838 -11.16095 -10.88089 -10.82024 -10.61273 -10.49054 -10.41854 -10.29074 -10.03187 -9.71260 -9.63629 -9.26806 -9.06771 -8.88573 -8.27661 -6.93475 -5.77930 -3.06684 0.67450 0.97210 2.16179 2.64600 2.82465 3.08160 3.41313 3.46546 3.48602 3.64416 4.27463 4.45990 4.50420 4.56044 4.76137 4.77525 4.80069 4.91804 4.98622 5.03490 5.09344 5.14234 5.16549 5.41089 5.41607 5.47949 5.54732 5.55925 5.62094 5.62454 5.75322 5.77860 5.84516 5.88804 5.95342 6.05873 6.08849 6.11170 6.17452 6.20912 6.33988 6.38576 6.40104 6.51218 6.68284 6.84527 6.87767 6.97312 7.43284 7.67940 7.68423 8.15341 8.41078 9.51904 10.10951 10.45285 11.44978 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007548 B = 0.002644 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3708.851642 B =10588.717853 C =12958.121789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.511 3.489 3 O -0.528 6.528 4 N -0.673 5.673 5 C 0.131 3.869 6 C -0.094 4.094 7 C -0.112 4.112 8 C -0.037 4.037 9 C -0.118 4.118 10 C -0.119 4.119 11 C 0.561 3.439 12 O -0.531 6.531 13 N -0.717 5.717 14 C 0.142 3.858 15 H 0.091 0.909 16 C -0.162 4.162 17 C -0.123 4.123 18 C -0.125 4.125 19 C 0.153 3.847 20 N -0.735 5.735 21 C -0.240 4.240 22 H 0.070 0.930 23 C -0.015 4.015 24 N -0.933 5.933 25 Si 0.907 3.093 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 C -0.107 4.107 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.415 0.585 34 H 0.140 0.860 35 H 0.132 0.868 36 H 0.076 0.924 37 H 0.055 0.945 38 H 0.093 0.907 39 H 0.398 0.602 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.017 0.983 48 H 0.016 0.984 49 H 0.383 0.617 50 H 0.255 0.745 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.489 22.132 6.707 23.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.300 3.700 3 O -0.404 6.404 4 N -0.319 5.319 5 C 0.037 3.963 6 C -0.114 4.114 7 C -0.131 4.131 8 C -0.038 4.038 9 C -0.174 4.174 10 C -0.123 4.123 11 C 0.349 3.651 12 O -0.409 6.409 13 N -0.368 5.368 14 C 0.037 3.963 15 H 0.109 0.891 16 C -0.220 4.220 17 C -0.161 4.161 18 C -0.163 4.163 19 C 0.025 3.975 20 N -0.379 5.379 21 C -0.371 4.371 22 H 0.088 0.912 23 C -0.211 4.211 24 N -0.582 5.582 25 Si 0.738 3.262 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.208 1.208 29 C -0.128 4.128 30 H 0.111 0.889 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.252 0.748 34 H 0.157 0.843 35 H 0.150 0.850 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.112 0.888 39 H 0.234 0.766 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.035 0.965 48 H 0.034 0.966 49 H 0.217 0.783 50 H 0.065 0.935 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.607 22.686 6.629 23.778 hybrid contribution -1.534 -1.233 -0.211 1.980 sum 1.073 21.453 6.419 22.418 Atomic orbital electron populations 1.21946 0.90462 1.06054 1.04925 1.21047 0.91019 0.83001 0.74942 1.90737 1.70630 1.31278 1.47738 1.43633 1.05216 1.10293 1.72759 1.17544 0.82862 0.97362 0.98489 1.21342 0.94903 0.98348 0.96802 1.20949 0.93073 0.98825 1.00226 1.20048 0.97106 0.92608 0.94088 1.21040 0.90147 1.01330 1.04854 1.19550 0.92607 0.97504 1.02596 1.18159 0.87202 0.81310 0.78437 1.90722 1.14682 1.73038 1.62463 1.46035 1.12104 1.30401 1.48306 1.21065 0.94194 0.86638 0.94353 0.89126 1.22174 1.00958 1.01801 0.97099 1.21855 0.99240 0.96273 0.98777 1.21734 0.99959 0.98244 0.96399 1.20646 0.94216 0.92311 0.90283 1.42386 1.57625 1.35080 1.02777 1.19238 1.20461 1.04823 0.92583 0.91239 1.24753 1.01222 0.99817 0.95292 1.69666 1.49009 1.42960 0.96584 0.86190 0.80620 0.82536 0.76857 1.21740 1.21743 1.20762 1.20984 0.92873 0.99310 0.99680 0.88892 0.88529 0.88751 0.74832 0.84263 0.84983 0.90589 0.92587 0.88821 0.76642 0.91500 0.92256 0.92589 0.90183 0.91496 0.92142 0.91885 0.96493 0.96640 0.78333 0.93519 0.85167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.78 10.32 36.01 0.37 -0.41 16 2 C 0.51 4.39 7.69 -10.99 -0.08 4.30 16 3 O -0.53 -6.63 14.62 5.55 0.08 -6.55 16 4 N -0.67 -5.32 5.35 -9.89 -0.05 -5.37 16 5 C 0.13 1.36 6.32 -83.74 -0.53 0.83 16 6 C -0.09 -1.03 8.66 -39.31 -0.34 -1.37 16 7 C -0.11 -1.18 9.65 -39.67 -0.38 -1.56 16 8 C -0.04 -0.43 5.91 -104.20 -0.62 -1.04 16 9 C -0.12 -1.29 8.68 36.00 0.31 -0.98 16 10 C -0.12 -1.41 5.87 -104.99 -0.62 -2.03 16 11 C 0.56 7.26 7.67 -12.32 -0.09 7.17 16 12 O -0.53 -8.15 13.02 5.32 0.07 -8.08 16 13 N -0.72 -7.89 4.48 -54.74 -0.25 -8.14 16 14 C 0.14 1.59 2.57 -67.93 -0.17 1.41 16 15 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 16 C -0.16 -1.58 9.48 37.16 0.35 -1.23 16 17 C -0.12 -1.40 4.75 -26.73 -0.13 -1.53 16 18 C -0.13 -1.93 5.22 -26.73 -0.14 -2.07 16 19 C 0.15 3.00 6.26 -4.04 -0.03 2.97 16 20 N -0.73 -18.68 5.60 -59.91 -0.34 -19.01 16 21 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 22 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 23 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 24 N -0.93 -28.27 13.06 55.49 0.72 -27.55 16 25 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 29 C -0.11 -1.09 9.43 -38.98 -0.37 -1.46 16 30 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.10 0.44 8.12 -51.93 -0.42 0.02 16 32 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.42 2.13 8.81 -40.82 -0.36 1.77 16 34 H 0.14 1.57 6.23 -52.49 -0.33 1.25 16 35 H 0.13 1.09 8.05 -52.49 -0.42 0.67 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.49 8.03 -51.93 -0.42 0.07 16 38 H 0.09 1.17 5.92 -51.93 -0.31 0.86 16 39 H 0.40 3.65 6.67 -40.82 -0.27 3.38 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.93 7.75 -51.93 -0.40 0.53 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 47 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 49 H 0.38 10.29 7.67 -40.82 -0.31 9.98 16 50 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 51 H 0.13 1.03 6.45 -52.49 -0.34 0.69 16 LS Contribution 417.97 15.07 6.30 6.30 Total: -1.00 -35.61 417.97 -9.36 -44.97 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -8.17 Total: 10.57 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -2.71 Total: -4.39 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: 0.09 Total: -60.07 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: 0.15 Total: -14.63 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -35.61 -9.36 -44.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717697063.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.148 kcal (2) G-P(sol) polarization free energy of solvation -35.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds