Wall clock time and date at job start Wed Apr 1 2020 05:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21287 * 119.99651 * 2 1 4 4 N 1.34767 * 119.99811 * 179.97438 * 2 1 3 5 5 C 1.39956 * 119.99968 * 174.23179 * 4 2 1 6 6 C 1.38993 * 120.00128 * 329.17083 * 5 4 2 7 7 C 1.38207 * 120.22666 * 180.27923 * 6 5 4 8 8 C 1.38027 * 120.22013 * 359.43985 * 7 6 5 9 9 C 1.50694 * 120.00188 * 180.25661 * 8 7 6 10 10 C 1.39576 * 119.99333 * 0.53747 * 8 7 6 11 11 C 1.47862 * 120.10744 * 179.72110 * 10 8 7 12 12 O 1.21548 * 120.00134 * 353.73271 * 11 10 8 13 13 N 1.34781 * 119.99510 * 173.73133 * 11 10 8 14 14 C 1.46501 * 119.99611 * 180.02562 * 13 11 10 15 15 H 1.09001 * 109.47340 * 324.99610 * 14 13 11 16 16 C 1.53004 * 109.47481 * 84.99882 * 14 13 11 17 17 C 1.53002 * 109.47053 * 204.99964 * 14 13 11 18 18 C 1.53002 * 109.46987 * 64.99666 * 17 14 13 19 19 C 1.53002 * 109.46987 * 179.97438 * 18 17 14 20 20 N 1.46502 * 109.47415 * 180.02562 * 19 18 17 21 21 C 1.36931 * 120.00327 * 180.02562 * 20 19 18 22 22 H 1.07995 * 120.00015 * 359.97438 * 21 20 19 23 23 C 1.38821 * 119.99802 * 179.97438 * 21 20 19 24 24 N 1.31615 * 119.99823 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99540 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46860 * 90.00111 * 25 23 21 27 27 H 1.48499 * 109.46735 * 209.99899 * 25 23 21 28 28 H 1.48496 * 109.47339 * 329.99918 * 25 23 21 29 29 C 1.38593 * 120.00082 * 149.15137 * 5 4 2 30 30 H 1.08995 * 109.47414 * 240.00675 * 1 2 3 31 31 H 1.09002 * 109.46978 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.47057 * 119.99667 * 1 2 3 33 33 H 0.97006 * 120.00189 * 354.23769 * 4 2 1 34 34 H 1.08000 * 119.88106 * 359.97438 * 6 5 4 35 35 H 1.07997 * 119.88883 * 179.70851 * 7 6 5 36 36 H 1.09000 * 109.47599 * 262.77111 * 9 8 7 37 37 H 1.09004 * 109.47191 * 22.76567 * 9 8 7 38 38 H 1.08999 * 109.47441 * 142.76721 * 9 8 7 39 39 H 0.97000 * 120.00202 * 359.97438 * 13 11 10 40 40 H 1.08997 * 109.47168 * 179.97438 * 16 14 13 41 41 H 1.09001 * 109.46783 * 300.00180 * 16 14 13 42 42 H 1.08997 * 109.46679 * 59.99861 * 16 14 13 43 43 H 1.08997 * 109.47117 * 184.99424 * 17 14 13 44 44 H 1.08991 * 109.47159 * 304.99794 * 17 14 13 45 45 H 1.08995 * 109.47582 * 300.00300 * 18 17 14 46 46 H 1.09006 * 109.47045 * 60.00538 * 18 17 14 47 47 H 1.09007 * 109.47069 * 299.99854 * 19 18 17 48 48 H 1.08991 * 109.47159 * 60.00128 * 19 18 17 49 49 H 0.97006 * 119.99417 * 359.97438 * 20 19 18 50 50 H 0.97003 * 119.99131 * 180.02562 * 24 23 21 51 51 H 1.07997 * 120.11217 * 359.97438 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5751 -1.1703 -0.1213 6 6 4.2115 -0.1709 -0.8479 7 6 5.5877 -0.1727 -0.9760 8 6 6.3402 -1.1606 -0.3736 9 6 7.8407 -1.1545 -0.5117 10 6 5.7107 -2.1684 0.3586 11 6 6.5139 -3.2314 0.9998 12 8 7.7106 -3.2950 0.7969 13 7 5.9189 -4.1299 1.8094 14 6 6.7148 -5.1827 2.4453 15 1 7.5083 -5.4977 1.7676 16 6 7.3318 -4.6454 3.7382 17 6 5.8153 -6.3777 2.7676 18 6 5.2974 -6.9921 1.4656 19 6 4.3984 -8.1874 1.7879 20 7 3.9030 -8.7761 0.5412 21 6 3.0738 -9.8651 0.5803 22 1 2.7853 -10.2903 1.5302 23 6 2.6040 -10.4225 -0.6010 24 7 2.9560 -9.9047 -1.7587 25 14 1.4722 -11.9077 -0.5475 26 1 0.0599 -11.4520 -0.4917 27 1 1.6787 -12.7315 -1.7657 28 1 1.7781 -12.7201 0.6572 29 6 4.3213 -2.1698 0.4830 30 1 -0.3634 -0.5137 0.8900 31 1 -0.3633 1.0277 -0.0005 32 1 -0.3633 -0.5138 -0.8900 33 1 1.6995 -2.0051 0.0852 34 1 3.6282 0.6070 -1.3181 35 1 6.0761 0.6039 -1.5458 36 1 8.1345 -1.8307 -1.3146 37 1 8.1802 -0.1452 -0.7444 38 1 8.2931 -1.4833 0.4239 39 1 4.9640 -4.0789 1.9717 40 1 7.9235 -5.4289 4.2114 41 1 7.9726 -3.7941 3.5085 42 1 6.5382 -4.3304 4.4158 43 1 6.3866 -7.1241 3.3195 44 1 4.9721 -6.0449 3.3728 45 1 4.7262 -6.2457 0.9136 46 1 6.1407 -7.3250 0.8603 47 1 4.9701 -8.9337 2.3396 48 1 3.5553 -7.8550 2.3933 49 1 4.1619 -8.3940 -0.3120 50 1 2.6274 -10.2940 -2.5841 51 1 3.8287 -2.9468 1.0486 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717697063.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:12 Heat of formation + Delta-G solvation = -72.797728 kcal Electronic energy + Delta-G solvation = -30039.207811 eV Core-core repulsion = 25937.204285 eV Total energy + Delta-G solvation = -4102.003526 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.85010 -40.98172 -39.29729 -37.92976 -36.58063 -36.01358 -34.32457 -33.22015 -32.77449 -31.71862 -30.67665 -30.41703 -27.36445 -27.16622 -25.25133 -24.66777 -23.06757 -22.67830 -22.27467 -21.54757 -21.11482 -19.19282 -19.06575 -18.34591 -17.49124 -17.04901 -16.81526 -16.60400 -16.46809 -16.14762 -15.87277 -15.54068 -15.37357 -15.36863 -15.14351 -14.70976 -14.61630 -14.51216 -14.30531 -13.77333 -13.55173 -13.45760 -13.37985 -13.19820 -13.11687 -13.04935 -12.86069 -12.80832 -12.76143 -12.47158 -12.35894 -12.23503 -12.05879 -11.84089 -11.69258 -11.48484 -11.39596 -11.06932 -10.92134 -10.61736 -10.18608 -9.95546 -9.08282 -8.99501 -7.94832 -5.23992 -0.21150 0.16479 1.47331 1.47914 1.49772 1.58352 1.88030 2.02671 2.19191 2.56548 2.77581 3.38993 3.56653 3.65649 3.72546 3.81897 3.94119 3.99920 4.11935 4.14924 4.28541 4.30891 4.37384 4.42251 4.54991 4.60488 4.65198 4.66935 4.69646 4.80630 4.83673 4.85014 4.88341 4.93470 4.99835 5.01783 5.09888 5.11103 5.13888 5.29373 5.32688 5.35176 5.40319 5.44492 5.51695 5.54744 5.62311 5.86905 6.27591 6.37554 6.52892 7.06244 7.20650 7.33331 8.10728 8.32676 9.28842 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007548 B = 0.002644 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3708.851642 B =10588.717853 C =12958.121789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.506 3.494 3 O -0.573 6.573 4 N -0.664 5.664 5 C 0.125 3.875 6 C -0.105 4.105 7 C -0.111 4.111 8 C -0.053 4.053 9 C -0.111 4.111 10 C -0.134 4.134 11 C 0.557 3.443 12 O -0.562 6.562 13 N -0.708 5.708 14 C 0.144 3.856 15 H 0.067 0.933 16 C -0.155 4.155 17 C -0.109 4.109 18 C -0.113 4.113 19 C 0.150 3.850 20 N -0.750 5.750 21 C -0.246 4.246 22 H 0.077 0.923 23 C -0.077 4.077 24 N -0.971 5.971 25 Si 0.974 3.026 26 H -0.284 1.284 27 H -0.297 1.297 28 H -0.269 1.269 29 C -0.104 4.104 30 H 0.115 0.885 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.429 0.571 34 H 0.135 0.865 35 H 0.151 0.849 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.409 0.591 40 H 0.079 0.921 41 H 0.043 0.957 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.058 0.942 46 H 0.044 0.956 47 H 0.018 0.982 48 H 0.028 0.972 49 H 0.372 0.628 50 H 0.251 0.749 51 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.156 21.909 8.382 23.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.297 3.703 3 O -0.452 6.452 4 N -0.311 5.311 5 C 0.031 3.969 6 C -0.125 4.125 7 C -0.130 4.130 8 C -0.055 4.055 9 C -0.167 4.167 10 C -0.138 4.138 11 C 0.345 3.655 12 O -0.442 6.442 13 N -0.360 5.360 14 C 0.040 3.960 15 H 0.085 0.915 16 C -0.213 4.213 17 C -0.148 4.148 18 C -0.151 4.151 19 C 0.024 3.976 20 N -0.393 5.393 21 C -0.378 4.378 22 H 0.095 0.905 23 C -0.269 4.269 24 N -0.622 5.622 25 Si 0.803 3.197 26 H -0.211 1.211 27 H -0.224 1.224 28 H -0.194 1.194 29 C -0.125 4.125 30 H 0.134 0.866 31 H 0.113 0.887 32 H 0.131 0.869 33 H 0.269 0.731 34 H 0.152 0.848 35 H 0.169 0.831 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.246 0.754 40 H 0.098 0.902 41 H 0.062 0.938 42 H 0.090 0.910 43 H 0.110 0.890 44 H 0.107 0.893 45 H 0.077 0.923 46 H 0.063 0.937 47 H 0.036 0.964 48 H 0.046 0.954 49 H 0.203 0.797 50 H 0.060 0.940 51 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.927 22.438 8.369 23.966 hybrid contribution -1.014 -1.138 -0.695 1.675 sum -0.087 21.299 7.674 22.640 Atomic orbital electron populations 1.21975 0.86989 1.06654 1.06855 1.21845 0.92598 0.82268 0.73549 1.90719 1.71800 1.32827 1.49882 1.43648 1.04288 1.11068 1.72080 1.17700 0.84157 0.97037 0.98038 1.21452 0.95211 0.98603 0.97244 1.21138 0.92976 0.98901 0.99942 1.20213 0.97416 0.93128 0.94706 1.20947 0.90002 1.02223 1.03577 1.19627 0.93379 0.97513 1.03238 1.18385 0.86955 0.81661 0.78450 1.90709 1.16005 1.73926 1.63603 1.45983 1.12645 1.29758 1.47635 1.21003 0.93657 0.86676 0.94651 0.91451 1.22101 1.01234 1.01570 0.96373 1.21756 1.00020 0.96207 0.96767 1.21594 0.98468 0.96715 0.98308 1.20855 0.95065 0.93488 0.88163 1.42657 1.57539 1.34878 1.04219 1.19663 1.20053 1.05232 0.92826 0.90529 1.25600 1.03335 1.02968 0.95039 1.69828 1.50678 1.44602 0.97055 0.85129 0.78685 0.79079 0.76812 1.21054 1.22382 1.19425 1.21141 0.92205 0.99698 0.99480 0.86631 0.88664 0.86864 0.73139 0.84752 0.83103 0.91572 0.90519 0.90512 0.75396 0.90200 0.93756 0.91032 0.89039 0.89282 0.92284 0.93676 0.96393 0.95440 0.79707 0.94036 0.82966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.11 10.32 71.24 0.74 -0.37 16 2 C 0.51 8.11 7.69 87.66 0.67 8.78 16 3 O -0.57 -14.34 14.62 -3.05 -0.04 -14.38 16 4 N -0.66 -9.53 5.35 -303.60 -1.62 -11.15 16 5 C 0.13 2.50 6.32 38.11 0.24 2.74 16 6 C -0.10 -2.30 8.66 22.44 0.19 -2.10 16 7 C -0.11 -2.32 9.65 22.21 0.21 -2.10 16 8 C -0.05 -1.24 5.91 -19.59 -0.12 -1.36 16 9 C -0.11 -2.51 8.68 71.23 0.62 -1.89 16 10 C -0.13 -3.17 5.87 -20.10 -0.12 -3.29 16 11 C 0.56 14.48 7.67 86.79 0.67 15.15 16 12 O -0.56 -17.83 13.02 -3.87 -0.05 -17.88 16 13 N -0.71 -14.85 4.48 -445.38 -1.99 -16.85 16 14 C 0.14 3.05 2.57 44.99 0.12 3.17 16 15 H 0.07 1.77 7.58 -2.39 -0.02 1.76 16 16 C -0.15 -2.73 9.48 71.98 0.68 -2.05 16 17 C -0.11 -2.22 4.75 30.60 0.15 -2.08 16 18 C -0.11 -3.33 5.22 30.60 0.16 -3.17 16 19 C 0.15 5.67 6.26 86.38 0.54 6.21 16 20 N -0.75 -37.91 5.60 -343.45 -1.92 -39.84 16 21 C -0.25 -13.63 9.99 84.04 0.84 -12.79 16 22 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 23 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 24 N -0.97 -59.34 13.06 21.65 0.28 -59.05 16 25 Si 0.97 45.46 29.55 68.60 2.03 47.49 16 26 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 27 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 28 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 29 C -0.10 -2.02 9.43 22.66 0.21 -1.80 16 30 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.09 0.71 8.12 -2.39 -0.02 0.69 16 32 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.43 3.48 8.81 -92.70 -0.82 2.66 16 34 H 0.13 3.08 6.23 -2.91 -0.02 3.07 16 35 H 0.15 2.42 8.05 -2.91 -0.02 2.39 16 36 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.08 1.34 8.03 -2.39 -0.02 1.32 16 38 H 0.08 2.01 5.92 -2.39 -0.01 1.99 16 39 H 0.41 6.67 6.67 -92.71 -0.62 6.05 16 40 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.06 1.75 7.75 -2.39 -0.02 1.73 16 46 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 47 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 48 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.37 20.18 7.67 -92.70 -0.71 19.47 16 50 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 51 H 0.15 2.11 6.45 -2.91 -0.02 2.09 16 Total: -1.00 -78.07 417.97 1.76 -76.30 By element: Atomic # 1 Polarization: 37.46 SS G_CDS: -1.18 Total: 36.28 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: 6.27 Total: -0.92 kcal Atomic # 7 Polarization: -121.63 SS G_CDS: -5.26 Total: -126.89 kcal Atomic # 8 Polarization: -32.17 SS G_CDS: -0.09 Total: -32.26 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -78.07 1.76 -76.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717697063.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.505 kcal (2) G-P(sol) polarization free energy of solvation -78.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds