Wall clock time and date at job start Wed Apr 1 2020 04:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38364 * 119.85609 * 2 1 4 4 C 1.37952 * 120.14076 * 179.97438 * 3 2 1 5 5 C 1.39578 * 119.85734 * 0.27850 * 4 3 2 6 6 C 1.47849 * 120.14392 * 179.72022 * 5 4 3 7 7 O 1.21551 * 119.99605 * 140.80109 * 6 5 4 8 8 N 1.34775 * 120.00135 * 320.80268 * 6 5 4 9 9 C 1.46495 * 119.99932 * 4.85004 * 8 6 5 10 10 C 1.46496 * 119.99725 * 184.85183 * 8 6 5 11 11 C 1.52998 * 109.47345 * 90.00209 * 10 8 6 12 12 C 1.53001 * 109.47143 * 179.97438 * 11 10 8 13 13 N 1.46902 * 109.47103 * 179.97438 * 12 11 10 14 14 C 1.46894 * 111.00139 * 66.04073 * 13 12 11 15 15 C 1.46898 * 111.00183 * 190.00253 * 13 12 11 16 16 C 1.50691 * 109.47136 * 169.99999 * 15 13 12 17 17 O 1.21289 * 120.00515 * 359.97438 * 16 15 13 18 18 N 1.34783 * 119.99799 * 179.97438 * 16 15 13 19 19 C 1.37104 * 120.00180 * 179.97438 * 18 16 15 20 20 H 1.08003 * 119.99393 * 359.97438 * 19 18 16 21 21 C 1.38943 * 120.00186 * 179.97438 * 19 18 16 22 22 N 1.31414 * 120.00249 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99984 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47408 * 89.99654 * 23 21 19 25 25 H 1.48502 * 109.46896 * 209.99839 * 23 21 19 26 26 H 1.48503 * 109.46932 * 329.99484 * 23 21 19 27 27 C 1.39581 * 119.70949 * 359.46437 * 5 4 3 28 28 C 1.37962 * 119.84876 * 0.51053 * 27 5 4 29 29 H 1.08999 * 109.46836 * 90.00057 * 1 2 3 30 30 H 1.08996 * 109.47567 * 210.00702 * 1 2 3 31 31 H 1.09001 * 109.46837 * 330.00678 * 1 2 3 32 32 H 1.07998 * 119.92589 * 359.94886 * 3 2 1 33 33 H 1.08004 * 120.06996 * 179.97438 * 4 3 2 34 34 H 1.09007 * 109.47329 * 85.62877 * 9 8 6 35 35 H 1.08997 * 109.47120 * 205.62849 * 9 8 6 36 36 H 1.09002 * 109.47398 * 325.62889 * 9 8 6 37 37 H 1.09005 * 109.46803 * 209.99836 * 10 8 6 38 38 H 1.09004 * 109.47659 * 329.99620 * 10 8 6 39 39 H 1.09005 * 109.46865 * 299.99589 * 11 10 8 40 40 H 1.08996 * 109.47501 * 59.99695 * 11 10 8 41 41 H 1.08992 * 109.47039 * 299.99859 * 12 11 10 42 42 H 1.09004 * 109.47231 * 59.99773 * 12 11 10 43 43 H 1.09002 * 109.47130 * 60.00193 * 14 13 12 44 44 H 1.08999 * 109.47643 * 179.97438 * 14 13 12 45 45 H 1.09003 * 109.47280 * 300.00527 * 14 13 12 46 46 H 1.09003 * 109.46526 * 289.99683 * 15 13 12 47 47 H 1.08997 * 109.47251 * 49.99139 * 15 13 12 48 48 H 0.96996 * 120.00175 * 0.02562 * 18 16 15 49 49 H 0.96997 * 120.00204 * 179.97438 * 22 21 19 50 50 H 1.07992 * 120.07267 * 180.23300 * 27 5 4 51 51 H 1.08002 * 119.92242 * 179.74083 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2000 0.0000 4 6 3.5753 1.2069 0.0005 5 6 4.2762 -0.0002 -0.0048 6 6 5.7547 -0.0002 -0.0105 7 8 6.3649 -0.8175 0.6507 8 7 6.4258 0.9059 -0.7488 9 6 5.6945 1.9567 -1.4609 10 6 7.8865 0.8399 -0.8391 11 6 8.2849 -0.0416 -2.0244 12 6 9.8104 -0.1099 -2.1191 13 7 10.1930 -0.9568 -3.2569 14 6 9.7910 -0.3423 -4.5291 15 6 11.6343 -1.2401 -3.2412 16 6 11.9493 -2.2989 -4.2661 17 8 11.0606 -2.7715 -4.9428 18 7 13.2188 -2.7208 -4.4308 19 6 13.5054 -3.6845 -5.3630 20 1 12.7138 -4.1058 -5.9649 21 6 14.8141 -4.1190 -5.5332 22 7 15.0888 -5.0431 -6.4263 23 14 16.1830 -3.3907 -4.4915 24 1 16.3411 -4.1918 -3.2512 25 1 17.4539 -3.4114 -5.2595 26 1 15.8424 -1.9897 -4.1358 27 6 3.5752 -1.2072 0.0007 28 6 2.1956 -1.2000 0.0007 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5137 32 1 1.6523 2.1332 -0.0008 33 1 4.1119 2.1442 0.0001 34 1 5.5237 2.7990 -0.7903 35 1 6.2790 2.2884 -2.3191 36 1 4.7367 1.5648 -1.8032 37 1 8.2873 1.8435 -0.9817 38 1 8.2887 0.4154 0.0808 39 1 7.8840 -1.0451 -1.8818 40 1 7.8828 0.3829 -2.9443 41 1 10.2109 0.8937 -2.2619 42 1 10.2129 -0.5342 -1.1993 43 1 10.2791 0.6265 -4.6349 44 1 10.0866 -0.9897 -5.3548 45 1 8.7094 -0.2075 -4.5418 46 1 12.1859 -0.3301 -3.4774 47 1 11.9243 -1.5941 -2.2519 48 1 13.9295 -2.3431 -3.8895 49 1 16.0025 -5.3462 -6.5453 50 1 4.1116 -2.1445 0.0004 51 1 1.6520 -2.1333 0.0007 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724858981.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:17 Heat of formation + Delta-G solvation = -52.004762 kcal Electronic energy + Delta-G solvation = -29353.683008 eV Core-core repulsion = 25252.581133 eV Total energy + Delta-G solvation = -4101.101876 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.50434 -40.52218 -39.58932 -38.28168 -36.87159 -35.93535 -34.20996 -33.75943 -32.86478 -31.90801 -29.62570 -28.63011 -28.15748 -27.19642 -26.30593 -24.38705 -23.59246 -22.69648 -21.83323 -21.26654 -20.67561 -20.15393 -18.44989 -17.90304 -17.49121 -16.89916 -16.81280 -16.70486 -16.48243 -16.15623 -15.90552 -15.80061 -15.45772 -15.16893 -14.85167 -14.73481 -14.62399 -14.51882 -14.35260 -14.26284 -13.99437 -13.73038 -13.32571 -13.20290 -13.02015 -13.01519 -12.87500 -12.76534 -12.66122 -12.50927 -12.49763 -12.42220 -12.32541 -11.97549 -11.88721 -11.54429 -11.47485 -10.99945 -10.38176 -10.23631 -9.95905 -9.78529 -9.59876 -9.17955 -8.41516 -6.02355 -0.07324 0.39568 1.29495 1.35617 1.44065 1.62277 1.95684 1.97091 2.22840 2.64653 2.76818 3.14298 3.26099 3.46163 3.83949 3.92632 3.97349 3.98907 4.07040 4.08530 4.24925 4.31751 4.37650 4.38937 4.41340 4.43936 4.48336 4.58138 4.59909 4.63301 4.68105 4.76915 4.79334 4.81398 4.86538 4.90578 5.07746 5.09415 5.13726 5.23707 5.27247 5.32687 5.37617 5.52987 5.53590 5.60292 5.90293 5.95319 6.02978 6.22973 6.28026 6.60162 6.88439 7.04366 7.39797 7.97715 8.76288 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023033 B = 0.001599 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.362192 B =17502.544076 C =17891.794585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.065 4.065 3 C -0.128 4.128 4 C -0.084 4.084 5 C -0.158 4.158 6 C 0.550 3.450 7 O -0.584 6.584 8 N -0.607 5.607 9 C 0.064 3.936 10 C 0.119 3.881 11 C -0.120 4.120 12 C 0.063 3.937 13 N -0.550 5.550 14 C 0.028 3.972 15 C 0.055 3.945 16 C 0.450 3.550 17 O -0.607 6.607 18 N -0.592 5.592 19 C -0.329 4.329 20 H 0.054 0.946 21 C -0.015 4.015 22 N -0.935 5.935 23 Si 0.966 3.034 24 H -0.258 1.258 25 H -0.274 1.274 26 H -0.230 1.230 27 C -0.084 4.084 28 C -0.135 4.135 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.159 0.841 33 H 0.158 0.842 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.115 0.885 38 H 0.069 0.931 39 H 0.035 0.965 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.079 0.921 43 H 0.039 0.961 44 H 0.049 0.951 45 H 0.074 0.926 46 H 0.082 0.918 47 H 0.116 0.884 48 H 0.389 0.611 49 H 0.279 0.721 50 H 0.111 0.889 51 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.371 24.199 16.971 38.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.066 4.066 3 C -0.146 4.146 4 C -0.102 4.102 5 C -0.161 4.161 6 C 0.340 3.660 7 O -0.465 6.465 8 N -0.338 5.338 9 C -0.077 4.077 10 C -0.003 4.003 11 C -0.159 4.159 12 C -0.064 4.064 13 N -0.275 5.275 14 C -0.120 4.120 15 C -0.076 4.076 16 C 0.238 3.762 17 O -0.491 6.491 18 N -0.234 5.234 19 C -0.458 4.458 20 H 0.072 0.928 21 C -0.213 4.213 22 N -0.576 5.576 23 Si 0.785 3.215 24 H -0.183 1.183 25 H -0.199 1.199 26 H -0.154 1.154 27 C -0.104 4.104 28 C -0.153 4.153 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.177 0.823 33 H 0.175 0.825 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.097 0.903 37 H 0.133 0.867 38 H 0.088 0.912 39 H 0.054 0.946 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.057 0.943 44 H 0.067 0.933 45 H 0.093 0.907 46 H 0.100 0.900 47 H 0.134 0.866 48 H 0.225 0.775 49 H 0.088 0.912 50 H 0.129 0.871 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -25.750 22.919 16.781 38.340 hybrid contribution 1.611 -0.188 -0.184 1.632 sum -24.139 22.730 16.597 37.079 Atomic orbital electron populations 1.20928 0.88845 1.04113 1.03537 1.20536 0.97894 0.92811 0.95315 1.21389 0.93495 0.98938 1.00746 1.21846 0.95060 0.97098 0.96219 1.19867 0.91769 0.95887 1.08626 1.18875 0.88181 0.80185 0.78741 1.90765 1.70748 1.40583 1.44414 1.47846 1.07636 1.30093 1.48237 1.22444 0.97950 0.89669 0.97678 1.21495 0.78823 1.01729 0.98297 1.21810 0.95402 0.99616 0.99033 1.22076 0.95423 0.95850 0.93100 1.61422 1.14254 1.47781 1.04055 1.22410 1.01194 0.96863 0.91526 1.21819 0.89879 0.96854 0.99007 1.20947 0.82091 0.86349 0.86856 1.90513 1.46957 1.60918 1.50722 1.42036 1.08180 1.37266 1.35935 1.19000 0.94930 1.16261 1.15592 0.92832 1.26114 1.00217 0.96599 0.98403 1.69807 1.21776 1.30541 1.35466 0.85357 0.77252 0.80348 0.78503 1.18296 1.19882 1.15371 1.21243 0.95123 0.96958 0.97027 1.21228 0.92940 0.99399 1.01731 0.89817 0.90830 0.89762 0.82313 0.82461 0.89557 0.89082 0.90272 0.86681 0.91210 0.94565 0.90952 0.91904 0.90272 0.94253 0.93252 0.90712 0.89999 0.86572 0.77503 0.91154 0.87092 0.84133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 10.01 71.24 0.71 0.08 16 2 C -0.07 -0.73 5.89 -19.81 -0.12 -0.84 16 3 C -0.13 -1.21 9.68 22.23 0.22 -0.99 16 4 C -0.08 -1.03 7.57 22.53 0.17 -0.86 16 5 C -0.16 -3.17 5.24 -20.09 -0.11 -3.28 16 6 C 0.55 13.62 7.36 86.79 0.64 14.26 16 7 O -0.58 -19.97 16.46 -3.88 -0.06 -20.03 16 8 N -0.61 -10.73 2.87 -850.20 -2.44 -13.17 16 9 C 0.06 0.54 8.88 127.77 1.13 1.68 16 10 C 0.12 2.07 5.42 86.38 0.47 2.53 16 11 C -0.12 -2.63 5.46 30.59 0.17 -2.46 16 12 C 0.06 1.41 4.96 86.30 0.43 1.84 16 13 N -0.55 -17.60 4.50 -927.08 -4.17 -21.77 16 14 C 0.03 0.87 8.96 127.69 1.14 2.02 16 15 C 0.06 1.80 5.45 85.55 0.47 2.27 16 16 C 0.45 21.17 7.47 87.65 0.66 21.83 16 17 O -0.61 -34.87 13.91 -3.06 -0.04 -34.92 16 18 N -0.59 -28.81 5.09 -306.99 -1.56 -30.37 16 19 C -0.33 -19.74 10.16 84.04 0.85 -18.89 16 20 H 0.05 3.83 7.39 -2.91 -0.02 3.81 16 21 C -0.01 -0.84 5.50 84.92 0.47 -0.37 16 22 N -0.94 -57.38 13.96 21.66 0.30 -57.07 16 23 Si 0.97 39.53 27.74 68.60 1.90 41.43 16 24 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 26 H -0.23 -7.91 6.52 99.48 0.65 -7.26 16 27 C -0.08 -1.76 9.63 22.53 0.22 -1.54 16 28 C -0.14 -2.05 9.68 22.23 0.22 -1.83 16 29 H 0.08 0.34 8.14 -2.39 -0.02 0.33 16 30 H 0.07 0.36 8.08 -2.39 -0.02 0.34 16 31 H 0.08 0.23 8.08 -2.39 -0.02 0.21 16 32 H 0.16 0.49 8.06 -2.91 -0.02 0.47 16 33 H 0.16 1.07 5.30 -2.91 -0.02 1.06 16 34 H 0.09 0.30 6.90 -2.38 -0.02 0.29 16 35 H 0.09 0.53 8.04 -2.39 -0.02 0.51 16 36 H 0.08 0.70 5.81 -2.39 -0.01 0.68 16 37 H 0.12 1.15 8.07 -2.38 -0.02 1.13 16 38 H 0.07 1.49 7.36 -2.38 -0.02 1.48 16 39 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.07 1.47 6.55 -2.39 -0.02 1.45 16 41 H 0.06 1.05 8.12 -2.39 -0.02 1.03 16 42 H 0.08 1.72 7.93 -2.38 -0.02 1.70 16 43 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.05 2.01 5.82 -2.39 -0.01 2.00 16 45 H 0.07 2.07 6.47 -2.39 -0.02 2.05 16 46 H 0.08 2.15 8.12 -2.39 -0.02 2.13 16 47 H 0.12 3.19 7.93 -2.39 -0.02 3.17 16 48 H 0.39 15.65 5.76 -92.71 -0.53 15.11 16 49 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 50 H 0.11 2.63 8.05 -2.91 -0.02 2.61 16 51 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -89.43 411.22 2.00 -87.43 By element: Atomic # 1 Polarization: 32.71 SS G_CDS: 0.35 Total: 33.06 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: 7.73 Total: 15.43 kcal Atomic # 7 Polarization: -114.52 SS G_CDS: -7.87 Total: -122.40 kcal Atomic # 8 Polarization: -54.84 SS G_CDS: -0.11 Total: -54.95 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 1.90 Total: 41.43 kcal Total: -89.43 2.00 -87.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724858981.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.427 kcal (2) G-P(sol) polarization free energy of solvation -89.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds