Wall clock time and date at job start Wed Apr 1 2020 05:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37957 * 120.06980 * 2 1 4 4 C 1.38360 * 120.14382 * 179.72458 * 3 2 1 5 5 C 1.38366 * 120.29282 * 0.30364 * 4 3 2 6 6 C 1.37955 * 120.14153 * 359.95081 * 5 4 3 7 7 C 1.50705 * 120.07340 * 180.02562 * 6 5 4 8 8 C 1.39576 * 120.07430 * 180.25842 * 2 1 3 9 9 C 1.47837 * 120.14533 * 359.97438 * 8 2 1 10 10 O 1.21553 * 120.00587 * 270.25466 * 9 8 2 11 11 N 1.34775 * 119.99799 * 90.25320 * 9 8 2 12 12 C 1.46508 * 119.99960 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.47090 * 325.00327 * 12 11 9 14 14 C 1.53000 * 109.47039 * 85.00291 * 12 11 9 15 15 C 1.52998 * 109.47282 * 204.99990 * 12 11 9 16 16 H 1.09005 * 109.46933 * 300.00133 * 15 12 11 17 17 C 1.53001 * 109.47169 * 59.99994 * 15 12 11 18 18 N 1.46897 * 109.47461 * 180.02562 * 15 12 11 19 19 C 1.46893 * 111.00092 * 154.99952 * 18 15 12 20 20 C 1.50705 * 109.47226 * 180.02562 * 19 18 15 21 21 O 1.21292 * 119.99845 * 359.97438 * 20 19 18 22 22 N 1.34773 * 120.00379 * 180.02562 * 20 19 18 23 23 C 1.37091 * 120.00475 * 179.97438 * 22 20 19 24 24 H 1.08007 * 119.99750 * 0.02562 * 23 22 20 25 25 C 1.38946 * 120.00486 * 179.97438 * 23 22 20 26 26 N 1.31405 * 119.99947 * 0.02562 * 25 23 22 27 27 Si 1.86806 * 120.00307 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47073 * 90.00185 * 27 25 23 29 29 H 1.48493 * 109.46978 * 210.00258 * 27 25 23 30 30 H 1.48501 * 109.46914 * 330.00573 * 27 25 23 31 31 H 1.09000 * 109.47364 * 89.99665 * 1 2 3 32 32 H 1.08997 * 109.46548 * 210.00052 * 1 2 3 33 33 H 1.08998 * 109.46982 * 329.99209 * 1 2 3 34 34 H 1.08002 * 119.93252 * 0.02562 * 3 2 1 35 35 H 1.08001 * 119.85601 * 180.27727 * 4 3 2 36 36 H 1.07992 * 119.92752 * 179.97438 * 5 4 3 37 37 H 1.08995 * 109.47131 * 90.00402 * 7 6 5 38 38 H 1.09004 * 109.47226 * 210.00484 * 7 6 5 39 39 H 1.09002 * 109.46622 * 330.00208 * 7 6 5 40 40 H 0.97003 * 120.00519 * 359.97438 * 11 9 8 41 41 H 1.09004 * 109.46862 * 300.00012 * 14 12 11 42 42 H 1.09005 * 109.47395 * 59.99732 * 14 12 11 43 43 H 1.09000 * 109.47302 * 180.02562 * 14 12 11 44 44 H 1.08999 * 109.46922 * 180.02562 * 17 15 12 45 45 H 1.09004 * 109.46832 * 300.00109 * 17 15 12 46 46 H 1.08998 * 109.46834 * 59.99889 * 17 15 12 47 47 H 1.00903 * 110.99943 * 31.04562 * 18 15 12 48 48 H 1.09008 * 109.47456 * 300.00130 * 19 18 15 49 49 H 1.09005 * 109.47315 * 60.00254 * 19 18 15 50 50 H 0.97003 * 119.99348 * 359.97438 * 22 20 19 51 51 H 0.97001 * 120.00417 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1939 0.0000 4 6 3.5819 1.1957 0.0058 5 6 4.2814 0.0019 0.0052 6 6 3.6023 -1.1989 -0.0001 7 6 4.3657 -2.4983 -0.0001 8 6 2.2065 -1.2078 -0.0054 9 6 1.4722 -2.4910 -0.0107 10 8 1.1667 -3.0208 1.0398 11 7 1.1416 -3.0734 -1.1802 12 6 0.4144 -4.3452 -1.1854 13 1 0.7430 -4.9551 -0.3439 14 6 -1.0866 -4.0750 -1.0641 15 6 0.6948 -5.0877 -2.4935 16 1 0.3661 -4.4778 -3.3351 17 6 2.1958 -5.3579 -2.6150 18 7 -0.0348 -6.3627 -2.4990 19 6 -0.2915 -6.8164 -3.8724 20 6 -1.0404 -8.1237 -3.8378 21 8 -1.3313 -8.6281 -2.7738 22 7 -1.3861 -8.7330 -4.9892 23 6 -2.0669 -9.9225 -4.9578 24 1 -2.3266 -10.3712 -4.0103 25 6 -2.4238 -10.5504 -6.1448 26 7 -2.1083 -10.0042 -7.2976 27 14 -3.3521 -12.1709 -6.1020 28 1 -4.8130 -11.9044 -6.0935 29 1 -3.0023 -12.9735 -7.3013 30 1 -2.9790 -12.9228 -4.8770 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3632 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5139 34 1 1.6583 2.1292 0.0004 35 1 4.1183 2.1331 0.0103 36 1 5.3613 0.0102 0.0093 37 1 4.5458 -2.8139 1.0275 38 1 3.7844 -3.2613 -0.5179 39 1 5.3190 -2.3595 -0.5100 40 1 1.3850 -2.6505 -2.0186 41 1 -1.2864 -3.5460 -0.1322 42 1 -1.4153 -3.4651 -1.9057 43 1 -1.6276 -5.0212 -1.0675 44 1 2.3955 -5.8865 -3.5471 45 1 2.7368 -4.4116 -2.6111 46 1 2.5244 -5.9678 -1.7734 47 1 -0.8944 -6.2896 -1.9757 48 1 -0.8886 -6.0698 -4.3962 49 1 0.6564 -6.9539 -4.3928 50 1 -1.1532 -8.3298 -5.8401 51 1 -2.3571 -10.4427 -8.1264 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725109200.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:38 Heat of formation + Delta-G solvation = -59.600245 kcal Electronic energy + Delta-G solvation = -30214.708826 eV Core-core repulsion = 26113.277585 eV Total energy + Delta-G solvation = -4101.431241 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.82714 -39.15066 -38.34141 -37.17480 -34.45535 -34.01480 -33.80030 -32.56646 -31.26950 -30.60132 -29.85933 -28.02349 -27.05948 -26.39841 -24.48805 -24.10508 -22.70299 -21.12395 -20.63471 -20.42476 -19.31295 -18.06827 -17.84891 -16.66904 -16.38587 -16.25734 -15.81735 -15.42660 -15.01341 -14.56906 -14.45141 -14.39682 -14.19159 -13.86730 -13.80283 -13.59728 -13.55131 -13.49577 -13.40260 -13.08470 -13.01808 -12.46907 -12.38405 -12.29773 -12.02835 -11.93130 -11.81412 -11.69868 -11.60872 -11.47664 -11.41696 -11.33699 -11.04832 -10.64546 -10.39508 -10.22356 -10.10747 -9.51482 -9.30985 -9.16672 -8.99756 -8.46631 -8.11425 -7.96733 -6.42277 -3.83001 0.75075 0.93533 2.36470 2.85863 3.17677 3.26353 3.26726 3.32767 3.89934 4.09540 4.28078 4.33462 4.38320 4.40670 4.52446 4.62098 4.82252 4.85438 4.96747 5.09466 5.10150 5.14239 5.21801 5.23035 5.24594 5.29278 5.34952 5.41579 5.42936 5.48007 5.61825 5.65480 5.69316 5.76701 5.83643 5.85216 5.94472 5.95485 6.00672 6.06057 6.11536 6.13021 6.20900 6.27427 6.33905 6.51675 7.16699 7.24851 7.54922 7.62277 7.96646 8.05785 8.60613 9.17472 9.53562 10.05023 10.75435 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025766 B = 0.001777 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.448812 B =15754.965238 C =16019.655630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.046 4.046 3 C -0.130 4.130 4 C -0.097 4.097 5 C -0.129 4.129 6 C -0.045 4.045 7 C -0.124 4.124 8 C -0.128 4.128 9 C 0.570 3.430 10 O -0.528 6.528 11 N -0.714 5.714 12 C 0.139 3.861 13 H 0.100 0.900 14 C -0.170 4.170 15 C 0.078 3.922 16 H 0.046 0.954 17 C -0.140 4.140 18 N -0.660 5.660 19 C 0.052 3.948 20 C 0.440 3.560 21 O -0.582 6.582 22 N -0.563 5.563 23 C -0.299 4.299 24 H 0.103 0.897 25 C 0.022 3.978 26 N -0.902 5.902 27 Si 0.930 3.070 28 H -0.278 1.278 29 H -0.284 1.284 30 H -0.269 1.269 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.400 0.600 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.074 0.926 44 H 0.059 0.941 45 H 0.051 0.949 46 H 0.064 0.936 47 H 0.352 0.648 48 H 0.044 0.956 49 H 0.087 0.913 50 H 0.392 0.608 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.778 25.285 8.990 29.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.047 4.047 3 C -0.148 4.148 4 C -0.115 4.115 5 C -0.147 4.147 6 C -0.046 4.046 7 C -0.180 4.180 8 C -0.132 4.132 9 C 0.355 3.645 10 O -0.404 6.404 11 N -0.365 5.365 12 C 0.035 3.965 13 H 0.118 0.882 14 C -0.229 4.229 15 C -0.033 4.033 16 H 0.064 0.936 17 C -0.198 4.198 18 N -0.296 5.296 19 C -0.081 4.081 20 C 0.226 3.774 21 O -0.466 6.466 22 N -0.200 5.200 23 C -0.428 4.428 24 H 0.121 0.879 25 C -0.180 4.180 26 N -0.543 5.543 27 Si 0.757 3.243 28 H -0.204 1.204 29 H -0.209 1.209 30 H -0.194 1.194 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.235 0.765 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.093 0.907 44 H 0.078 0.922 45 H 0.070 0.930 46 H 0.083 0.917 47 H 0.174 0.826 48 H 0.062 0.938 49 H 0.105 0.895 50 H 0.225 0.775 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.856 24.062 10.351 28.753 hybrid contribution -0.863 0.351 -1.396 1.678 sum 10.994 24.414 8.955 28.233 Atomic orbital electron populations 1.20909 0.90679 1.03611 1.02849 1.19887 0.96120 0.91705 0.96963 1.20966 0.94304 0.97295 1.02207 1.21272 0.94212 0.98161 0.97884 1.20972 1.00043 0.91575 1.02130 1.19908 0.91808 0.96060 0.96795 1.20918 1.00018 0.93844 1.03247 1.19677 0.93491 0.92996 1.06991 1.18208 0.78223 0.84071 0.83970 1.90830 1.54079 1.64043 1.31442 1.46071 1.58254 1.23838 1.08379 1.21121 0.91745 0.84150 0.99486 0.88158 1.22263 0.95377 1.02786 1.02451 1.21727 0.96029 0.90250 0.95255 0.93565 1.21816 0.94082 1.00934 1.02967 1.60171 1.28656 1.27104 1.13714 1.21723 1.00247 0.96147 0.89986 1.19790 0.85220 0.87382 0.85035 1.90532 1.59080 1.67146 1.29851 1.41856 1.50234 1.21203 1.06724 1.19707 1.31088 0.97521 0.94530 0.87899 1.25261 0.98171 0.99883 0.94650 1.69608 1.47130 1.40120 0.97485 0.85854 0.79377 0.81192 0.77857 1.20436 1.20927 1.19387 0.90568 0.91053 0.90853 0.85520 0.85645 0.85474 0.90379 0.91165 0.90814 0.76538 0.91702 0.92434 0.90707 0.92242 0.92960 0.91693 0.82563 0.93843 0.89528 0.77482 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 9.62 36.01 0.35 -0.60 16 2 C -0.05 -0.40 5.91 -104.22 -0.62 -1.02 16 3 C -0.13 -0.93 9.69 -39.64 -0.38 -1.31 16 4 C -0.10 -0.64 10.04 -39.49 -0.40 -1.03 16 5 C -0.13 -0.93 9.69 -39.64 -0.38 -1.31 16 6 C -0.05 -0.40 5.91 -104.22 -0.62 -1.01 16 7 C -0.12 -0.98 9.62 36.01 0.35 -0.63 16 8 C -0.13 -1.28 5.63 -104.97 -0.59 -1.87 16 9 C 0.57 6.55 4.16 -12.33 -0.05 6.50 16 10 O -0.53 -8.18 16.76 5.32 0.09 -8.09 16 11 N -0.71 -6.78 4.38 -54.75 -0.24 -7.02 16 12 C 0.14 1.57 2.29 -67.93 -0.16 1.41 16 13 H 0.10 1.38 7.58 -51.93 -0.39 0.98 16 14 C -0.17 -1.88 9.25 37.16 0.34 -1.54 16 15 C 0.08 0.91 2.28 -67.71 -0.15 0.76 16 16 H 0.05 0.49 7.80 -51.93 -0.40 0.09 16 17 C -0.14 -1.54 9.26 37.16 0.34 -1.19 16 18 N -0.66 -10.37 5.93 -107.99 -0.64 -11.01 16 19 C 0.05 0.89 5.96 -4.98 -0.03 0.86 16 20 C 0.44 10.32 7.82 -10.98 -0.09 10.23 16 21 O -0.58 -15.78 15.78 5.55 0.09 -15.70 16 22 N -0.56 -14.20 5.29 -10.96 -0.06 -14.25 16 23 C -0.30 -8.33 9.68 -14.94 -0.14 -8.47 16 24 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 25 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 26 N -0.90 -24.43 13.05 55.50 0.72 -23.70 16 27 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 28 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 29 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 30 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.68 7.08 -51.93 -0.37 0.31 16 33 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 34 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 35 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 36 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.61 7.08 -51.93 -0.37 0.24 16 39 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 40 H 0.40 2.97 8.37 -40.82 -0.34 2.63 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.89 6.21 -51.93 -0.32 0.57 16 44 H 0.06 0.68 7.45 -51.93 -0.39 0.29 16 45 H 0.05 0.45 7.45 -51.93 -0.39 0.07 16 46 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.35 5.74 5.86 -39.29 -0.23 5.51 16 48 H 0.04 0.67 8.06 -51.92 -0.42 0.25 16 49 H 0.09 1.38 7.44 -51.93 -0.39 0.99 16 50 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 51 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 419.18 15.07 6.32 6.32 Total: -1.00 -33.46 419.18 -9.13 -42.59 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: -8.06 Total: 14.59 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -2.33 Total: 0.25 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: -0.21 Total: -55.99 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: 0.18 Total: -23.79 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -33.46 -9.13 -42.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725109200.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.009 kcal (2) G-P(sol) polarization free energy of solvation -33.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds