Wall clock time and date at job start Wed Apr 1 2020 05:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38377 * 119.92841 * 2 1 4 4 C 1.38335 * 120.29473 * 179.97438 * 3 2 1 5 5 C 1.37992 * 120.14305 * 0.03015 * 4 3 2 6 6 C 1.50690 * 120.07213 * 179.97438 * 5 4 3 7 7 C 1.39555 * 119.84995 * 359.97203 * 5 4 3 8 8 C 1.47848 * 120.14082 * 179.97438 * 7 5 4 9 9 O 1.21547 * 120.00087 * 354.02426 * 8 7 5 10 10 N 1.34772 * 119.99810 * 174.01397 * 8 7 5 11 11 C 1.46499 * 120.00194 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.47108 * 325.01071 * 11 10 8 13 13 C 1.53003 * 109.46881 * 85.00344 * 11 10 8 14 14 C 1.52992 * 109.47562 * 205.00518 * 11 10 8 15 15 H 1.08998 * 109.47385 * 65.00095 * 14 11 10 16 16 C 1.53004 * 109.47300 * 304.99886 * 14 11 10 17 17 N 1.46903 * 109.47389 * 185.00012 * 14 11 10 18 18 C 1.46893 * 111.00417 * 205.00051 * 17 14 11 19 19 C 1.50694 * 109.47417 * 179.97438 * 18 17 14 20 20 O 1.21290 * 120.00081 * 0.02562 * 19 18 17 21 21 N 1.34779 * 120.00338 * 179.97438 * 19 18 17 22 22 C 1.37095 * 120.00389 * 180.02562 * 21 19 18 23 23 H 1.08005 * 119.99950 * 359.97438 * 22 21 19 24 24 C 1.38951 * 119.99969 * 180.02562 * 22 21 19 25 25 N 1.31412 * 120.00177 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99642 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47089 * 90.00042 * 26 24 22 28 28 H 1.48496 * 109.47035 * 209.99883 * 26 24 22 29 29 H 1.48493 * 109.47180 * 330.00004 * 26 24 22 30 30 C 1.37942 * 119.92609 * 180.26404 * 2 1 3 31 31 H 1.08995 * 109.47301 * 89.99529 * 1 2 3 32 32 H 1.09004 * 109.46982 * 210.00025 * 1 2 3 33 33 H 1.09004 * 109.46728 * 329.99168 * 1 2 3 34 34 H 1.08001 * 119.85354 * 359.97438 * 3 2 1 35 35 H 1.07999 * 119.93105 * 180.02562 * 4 3 2 36 36 H 1.09000 * 109.47778 * 263.43037 * 6 5 4 37 37 H 1.09000 * 109.47561 * 23.43291 * 6 5 4 38 38 H 1.09003 * 109.47223 * 143.42563 * 6 5 4 39 39 H 0.97004 * 120.00001 * 0.02562 * 10 8 7 40 40 H 1.08998 * 109.47416 * 300.00349 * 13 11 10 41 41 H 1.08998 * 109.47326 * 60.00113 * 13 11 10 42 42 H 1.09002 * 109.47556 * 180.02562 * 13 11 10 43 43 H 1.08998 * 109.47252 * 179.97438 * 16 14 11 44 44 H 1.08998 * 109.47073 * 300.00401 * 16 14 11 45 45 H 1.09003 * 109.46634 * 60.00040 * 16 14 11 46 46 H 1.00904 * 110.99874 * 81.04741 * 17 14 11 47 47 H 1.09004 * 109.47060 * 300.00104 * 18 17 14 48 48 H 1.08997 * 109.47455 * 59.99776 * 18 17 14 49 49 H 0.97002 * 119.99629 * 359.97438 * 21 19 18 50 50 H 0.97001 * 119.99460 * 180.02562 * 25 24 22 51 51 H 1.07999 * 120.07493 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1992 0.0000 4 6 3.5807 1.2081 0.0005 5 6 4.2813 0.0192 0.0004 6 6 5.7881 0.0307 0.0004 7 6 3.5911 -1.1937 0.0004 8 6 4.3352 -2.4713 -0.0003 9 8 5.5457 -2.4695 -0.1104 10 7 3.6713 -3.6378 0.1214 11 6 4.4085 -4.9038 0.1202 12 1 5.2613 -4.8270 -0.5543 13 6 4.9038 -5.2069 1.5358 14 6 3.4864 -6.0306 -0.3497 15 1 3.2046 -5.8601 -1.3887 16 6 2.2292 -6.0576 0.5219 17 7 4.1878 -7.3164 -0.2373 18 6 3.6347 -8.3017 -1.1760 19 6 4.3780 -9.6047 -1.0325 20 8 5.2795 -9.7031 -0.2271 21 7 4.0404 -10.6611 -1.7983 22 6 4.7162 -11.8466 -1.6674 23 1 5.5196 -11.9340 -0.9508 24 6 4.3684 -12.9355 -2.4574 25 7 3.3913 -12.8291 -3.3297 26 14 5.2899 -14.5507 -2.2794 27 1 4.6186 -15.3936 -1.2575 28 1 5.2960 -15.2632 -3.5823 29 1 6.6874 -14.2794 -1.8571 30 6 2.1952 -1.1955 -0.0055 31 1 -0.3633 0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5140 34 1 1.6539 2.1325 -0.0004 35 1 4.1136 2.1475 0.0009 36 1 6.1525 -0.0840 -1.0204 37 1 6.1444 0.9763 0.4092 38 1 6.1578 -0.7918 0.6127 39 1 2.7053 -3.6392 0.2091 40 1 5.5607 -4.4042 1.8706 41 1 4.0511 -5.2836 2.2104 42 1 5.4527 -6.1486 1.5349 43 1 1.5720 -6.8601 0.1868 44 1 2.5110 -6.2281 1.5609 45 1 1.7087 -5.1035 0.4385 46 1 4.1580 -7.6630 0.7099 47 1 2.5787 -8.4593 -0.9568 48 1 3.7429 -7.9326 -2.1958 49 1 3.3186 -10.5827 -2.4417 50 1 3.1484 -13.5894 -3.8808 51 1 1.6552 -2.1308 -0.0102 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725119666.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:48 Heat of formation + Delta-G solvation = -53.722075 kcal Electronic energy + Delta-G solvation = -29831.847724 eV Core-core repulsion = 25730.671380 eV Total energy + Delta-G solvation = -4101.176344 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.76827 -39.17559 -38.36681 -37.30146 -34.73584 -33.97194 -33.75392 -32.13057 -31.23234 -30.44406 -29.45561 -29.00646 -26.41895 -25.53237 -24.80410 -24.18468 -23.48757 -21.69941 -20.50704 -19.76929 -19.30797 -17.96356 -17.72528 -16.42880 -16.11523 -15.87047 -15.59040 -15.48876 -15.33475 -15.05491 -14.62737 -14.53536 -14.16036 -13.96386 -13.82193 -13.77377 -13.42629 -13.29751 -13.19539 -13.02666 -12.77214 -12.36432 -12.25345 -12.20106 -12.15855 -12.00161 -11.86989 -11.83612 -11.54579 -11.45562 -11.40881 -11.04938 -10.96066 -10.82987 -10.39226 -10.21869 -9.73919 -9.51076 -9.40416 -9.18642 -8.82087 -8.48034 -8.08727 -7.96224 -6.41953 -3.82656 0.53657 0.94685 2.64615 2.93125 3.17921 3.26731 3.33048 3.49291 3.90368 4.09921 4.28312 4.36096 4.37888 4.40675 4.62224 4.72489 4.78534 4.79051 5.00451 5.07620 5.11421 5.17550 5.17688 5.25878 5.31538 5.34088 5.35817 5.38557 5.55912 5.60334 5.61802 5.65119 5.66916 5.77188 5.83896 5.85951 5.95184 5.98440 6.03011 6.08499 6.11325 6.25434 6.29822 6.36345 6.47541 6.54200 7.14967 7.34896 7.55241 7.61436 8.06084 8.07458 8.60931 9.17792 9.53972 10.05338 10.75768 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022409 B = 0.001728 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.190865 B =16200.762219 C =16860.887505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.103 4.103 3 C -0.092 4.092 4 C -0.128 4.128 5 C -0.027 4.027 6 C -0.122 4.122 7 C -0.134 4.134 8 C 0.557 3.443 9 O -0.527 6.527 10 N -0.721 5.721 11 C 0.154 3.846 12 H 0.098 0.902 13 C -0.163 4.163 14 C 0.078 3.922 15 H 0.082 0.918 16 C -0.189 4.189 17 N -0.658 5.658 18 C 0.051 3.949 19 C 0.441 3.559 20 O -0.582 6.582 21 N -0.564 5.564 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.269 1.269 30 C -0.083 4.083 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.097 0.903 39 H 0.395 0.605 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.082 0.918 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.054 0.946 46 H 0.353 0.647 47 H 0.044 0.956 48 H 0.086 0.914 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.736 28.267 6.262 30.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.103 4.103 3 C -0.110 4.110 4 C -0.146 4.146 5 C -0.028 4.028 6 C -0.178 4.178 7 C -0.137 4.137 8 C 0.345 3.655 9 O -0.405 6.405 10 N -0.375 5.375 11 C 0.050 3.950 12 H 0.116 0.884 13 C -0.221 4.221 14 C -0.034 4.034 15 H 0.101 0.899 16 C -0.248 4.248 17 N -0.290 5.290 18 C -0.081 4.081 19 C 0.226 3.774 20 O -0.466 6.466 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 C -0.102 4.102 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.115 0.885 39 H 0.232 0.768 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.100 0.900 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.073 0.927 46 H 0.174 0.826 47 H 0.062 0.938 48 H 0.104 0.896 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.801 28.183 6.168 29.641 hybrid contribution -1.606 -0.988 -0.004 1.885 sum -8.406 27.195 6.163 29.124 Atomic orbital electron populations 1.20797 0.90712 1.03005 1.02575 1.19830 0.96358 0.92845 1.01246 1.21225 0.94200 0.97661 0.97963 1.21068 0.94069 0.97632 1.01837 1.20077 0.96999 0.91437 0.94329 1.21093 0.89931 1.02996 1.03795 1.19825 0.93439 0.93394 1.07057 1.18232 0.87238 0.83581 0.76493 1.90742 1.13585 1.86982 1.49155 1.46164 1.10802 1.05951 1.74553 1.20904 0.94830 0.80816 0.98480 0.88416 1.22175 1.01233 1.03102 0.95587 1.21725 0.91288 0.90654 0.99708 0.89936 1.22623 0.98943 1.01834 1.01412 1.60017 1.55992 1.01755 1.11282 1.21705 0.96344 0.92427 0.97662 1.19789 0.87296 0.85003 0.85317 1.90528 1.33026 1.83850 1.39228 1.41859 1.32999 1.10099 1.35079 1.19708 1.15416 0.87300 1.20426 0.87897 1.25265 0.96945 0.99866 0.95899 1.69613 1.28887 1.32412 1.23431 0.85853 0.79863 0.81087 0.77464 1.20444 1.20929 1.19388 1.21155 0.92784 0.97996 0.98274 0.90994 0.91367 0.91397 0.85662 0.85363 0.90600 0.92539 0.88508 0.76839 0.92529 0.92913 0.89952 0.91887 0.91546 0.92688 0.82629 0.93763 0.89555 0.77483 0.91890 0.85801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.53 10.01 36.01 0.36 -0.17 16 2 C -0.10 -0.72 5.87 -104.68 -0.61 -1.33 16 3 C -0.09 -0.63 9.69 -39.49 -0.38 -1.01 16 4 C -0.13 -0.99 9.66 -39.64 -0.38 -1.37 16 5 C -0.03 -0.27 5.91 -104.23 -0.62 -0.88 16 6 C -0.12 -1.19 8.73 36.00 0.31 -0.88 16 7 C -0.13 -1.36 5.87 -104.97 -0.62 -1.97 16 8 C 0.56 6.63 7.67 -12.33 -0.09 6.53 16 9 O -0.53 -7.85 13.00 5.32 0.07 -7.78 16 10 N -0.72 -7.23 4.94 -54.76 -0.27 -7.50 16 11 C 0.15 1.83 2.63 -67.93 -0.18 1.65 16 12 H 0.10 1.43 7.58 -51.93 -0.39 1.03 16 13 C -0.16 -1.94 8.86 37.16 0.33 -1.61 16 14 C 0.08 0.89 2.64 -67.71 -0.18 0.71 16 15 H 0.08 0.94 7.80 -51.93 -0.40 0.53 16 16 C -0.19 -1.73 8.68 37.16 0.32 -1.41 16 17 N -0.66 -10.08 5.23 -108.00 -0.56 -10.65 16 18 C 0.05 0.87 5.96 -4.98 -0.03 0.84 16 19 C 0.44 10.28 7.82 -10.99 -0.09 10.19 16 20 O -0.58 -15.68 15.78 5.55 0.09 -15.60 16 21 N -0.56 -14.20 5.29 -10.96 -0.06 -14.26 16 22 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 23 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.49 13.05 55.50 0.72 -23.77 16 26 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 30 C -0.08 -0.66 9.17 -39.18 -0.36 -1.02 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.27 8.09 -51.93 -0.42 -0.15 16 33 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 34 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 35 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.43 8.04 -51.93 -0.42 0.01 16 38 H 0.10 1.14 5.85 -51.93 -0.30 0.84 16 39 H 0.39 2.99 4.65 -40.82 -0.19 2.80 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.05 0.55 6.57 -51.93 -0.34 0.21 16 42 H 0.08 1.10 7.13 -51.93 -0.37 0.73 16 43 H 0.06 0.61 7.45 -51.93 -0.39 0.22 16 44 H 0.07 0.61 6.55 -51.93 -0.34 0.27 16 45 H 0.05 0.38 6.29 -51.93 -0.33 0.05 16 46 H 0.35 5.58 7.39 -39.29 -0.29 5.29 16 47 H 0.04 0.67 7.44 -51.93 -0.39 0.28 16 48 H 0.09 1.38 8.05 -51.93 -0.42 0.96 16 49 H 0.39 9.42 7.90 -40.82 -0.32 9.09 16 50 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 51 H 0.12 0.72 6.46 -52.49 -0.34 0.38 16 LS Contribution 409.86 15.07 6.18 6.18 Total: -1.00 -32.83 409.86 -9.01 -41.84 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: -7.69 Total: 15.18 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -2.45 Total: 0.28 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: -0.17 Total: -56.17 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: 0.16 Total: -23.37 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.83 -9.01 -41.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725119666.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.882 kcal (2) G-P(sol) polarization free energy of solvation -32.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds