Wall clock time and date at job start Wed Apr 1 2020 05:04:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 C 1.38382 * 119.92734 * 2 1
4 4 C 1.38339 * 120.28824 * 180.02562 * 3 2 1
5 5 C 1.37969 * 120.15018 * 0.02562 * 4 3 2
6 6 C 1.50704 * 120.07714 * 179.97438 * 5 4 3
7 7 C 1.39559 * 119.85223 * 359.97438 * 5 4 3
8 8 C 1.47843 * 120.14457 * 179.97438 * 7 5 4
9 9 O 1.21549 * 120.00445 * 354.01909 * 8 7 5
10 10 N 1.34776 * 119.99882 * 174.01996 * 8 7 5
11 11 C 1.46505 * 120.00077 * 180.02562 * 10 8 7
12 12 H 1.09004 * 109.47213 * 324.99521 * 11 10 8
13 13 C 1.52994 * 109.47103 * 84.99752 * 11 10 8
14 14 C 1.53003 * 109.47087 * 204.99857 * 11 10 8
15 15 H 1.08995 * 109.46852 * 299.99853 * 14 11 10
16 16 C 1.53003 * 109.47165 * 59.99826 * 14 11 10
17 17 N 1.46897 * 109.46893 * 179.97438 * 14 11 10
18 18 C 1.46905 * 110.99907 * 154.99693 * 17 14 11
19 19 C 1.50702 * 109.47315 * 179.97438 * 18 17 14
20 20 O 1.21294 * 119.99946 * 0.02562 * 19 18 17
21 21 N 1.34772 * 119.99730 * 180.02562 * 19 18 17
22 22 C 1.37095 * 119.99782 * 180.02562 * 21 19 18
23 23 H 1.08004 * 119.99916 * 359.97438 * 22 21 19
24 24 C 1.38947 * 120.00304 * 179.97438 * 22 21 19
25 25 N 1.31417 * 120.00291 * 179.97438 * 24 22 21
26 26 Si 1.86798 * 119.99968 * 359.97438 * 24 22 21
27 27 H 1.48499 * 109.47247 * 89.99536 * 26 24 22
28 28 H 1.48498 * 109.47422 * 210.00170 * 26 24 22
29 29 H 1.48500 * 109.47028 * 330.00098 * 26 24 22
30 30 C 1.37936 * 119.92647 * 180.25890 * 2 1 3
31 31 H 1.08996 * 109.46880 * 89.99990 * 1 2 3
32 32 H 1.09000 * 109.46779 * 210.00110 * 1 2 3
33 33 H 1.09002 * 109.46964 * 329.99681 * 1 2 3
34 34 H 1.07994 * 119.85696 * 359.97438 * 3 2 1
35 35 H 1.08011 * 119.92376 * 179.97438 * 4 3 2
36 36 H 1.08996 * 109.47440 * 263.43170 * 6 5 4
37 37 H 1.09000 * 109.46754 * 23.43374 * 6 5 4
38 38 H 1.09003 * 109.47293 * 143.42816 * 6 5 4
39 39 H 0.97001 * 120.00135 * 359.97438 * 10 8 7
40 40 H 1.09001 * 109.47165 * 299.99682 * 13 11 10
41 41 H 1.08995 * 109.47792 * 60.00057 * 13 11 10
42 42 H 1.09003 * 109.47179 * 180.02562 * 13 11 10
43 43 H 1.08995 * 109.47027 * 59.99729 * 16 14 11
44 44 H 1.09001 * 109.47096 * 180.02562 * 16 14 11
45 45 H 1.09002 * 109.46681 * 300.00086 * 16 14 11
46 46 H 1.00892 * 111.00232 * 278.95115 * 17 14 11
47 47 H 1.08995 * 109.47099 * 300.00603 * 18 17 14
48 48 H 1.09005 * 109.47027 * 60.00041 * 18 17 14
49 49 H 0.96998 * 120.00146 * 0.02562 * 21 19 18
50 50 H 0.96996 * 120.00069 * 179.97438 * 25 24 22
51 51 H 1.07998 * 120.07693 * 0.02562 * 30 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1974 1.1993 0.0000
4 6 3.5808 1.2080 -0.0005
5 6 4.2812 0.0194 -0.0016
6 6 5.7882 0.0308 -0.0028
7 6 3.5911 -1.1937 -0.0016
8 6 4.3352 -2.4712 -0.0033
9 8 5.5456 -2.4694 -0.1144
10 7 3.6714 -3.6378 0.1183
11 6 4.4088 -4.9038 0.1171
12 1 5.2615 -4.8270 -0.5575
13 6 4.9040 -5.2068 1.5327
14 6 3.4866 -6.0307 -0.3527
15 1 2.6340 -6.1074 0.3219
16 6 2.9914 -5.7276 -1.7683
17 7 4.2262 -7.2999 -0.3544
18 6 3.3129 -8.4416 -0.2112
19 6 4.1057 -9.7231 -0.2178
20 8 5.3130 -9.6888 -0.3302
21 7 3.4734 -10.9073 -0.0988
22 6 4.1947 -12.0731 -0.1043
23 1 5.2696 -12.0426 -0.2044
24 6 3.5429 -13.2940 0.0190
25 7 4.2343 -14.4116 0.0132
26 14 1.6838 -13.3469 0.1928
27 1 1.0629 -13.4329 -1.1534
28 1 1.2950 -14.5352 0.9941
29 1 1.2153 -12.1144 0.8760
30 6 2.1952 -1.1954 -0.0054
31 1 -0.3633 0.0000 -1.0276
32 1 -0.3633 -0.8900 0.5139
33 1 -0.3633 0.8900 0.5139
34 1 1.6539 2.1325 -0.0004
35 1 4.1137 2.1475 -0.0009
36 1 6.1517 -0.0836 -1.0240
37 1 6.1447 0.9762 0.4061
38 1 6.1583 -0.7921 0.6089
39 1 2.7055 -3.6393 0.2073
40 1 5.5610 -4.4040 1.8674
41 1 4.0514 -5.2836 2.2073
42 1 5.4530 -6.1484 1.5317
43 1 3.8441 -5.6508 -2.4428
44 1 2.3341 -6.5302 -2.1028
45 1 2.4428 -4.7857 -1.7673
46 1 4.7890 -7.3893 -1.1870
47 1 2.7684 -8.3555 0.7290
48 1 2.6061 -8.4477 -1.0411
49 1 2.5079 -10.9347 -0.0093
50 1 3.7793 -15.2639 0.0996
51 1 1.6552 -2.1307 -0.0100
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001725119668.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:04:52
Heat of formation + Delta-G solvation = -49.800957 kcal
Electronic energy + Delta-G solvation = -29886.622065 eV
Core-core repulsion = 25785.615754 eV
Total energy + Delta-G solvation = -4101.006312 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-40.78717 -39.16897 -38.51700 -37.27731 -34.83000 -34.01019 -33.82015 -32.16400
-31.66561 -30.42578 -29.68169 -29.32599 -26.51837 -25.49788 -24.43753 -24.03941
-23.14368 -21.71291 -20.72884 -20.35494 -19.39722 -18.40615 -17.68938 -16.62332
-16.07851 -15.94017 -15.66862 -15.38122 -15.34476 -15.04612 -14.82932 -14.30713
-14.20868 -13.98137 -13.87306 -13.66919 -13.38004 -13.28918 -13.21480 -13.06974
-12.94088 -12.59659 -12.39594 -12.29147 -12.07212 -12.04799 -11.99055 -11.89539
-11.65188 -11.60904 -11.47769 -11.32891 -11.17455 -10.74471 -10.61110 -9.98553
-9.77822 -9.58405 -9.44029 -9.23959 -8.85471 -8.60626 -8.21135 -8.15327
-6.31825 -3.83354 0.50527 0.91844 2.61243 2.87342 3.00972 3.04952
3.13725 3.46203 3.72703 4.07997 4.11824 4.29233 4.34636 4.36934
4.56091 4.62075 4.76005 4.77390 4.93987 4.98948 5.06826 5.08743
5.14694 5.20712 5.29065 5.32219 5.39144 5.43410 5.53039 5.54726
5.58055 5.60661 5.62407 5.68896 5.79959 5.82391 5.88869 5.91591
5.97266 6.01564 6.04596 6.08232 6.26347 6.35627 6.50957 6.53891
7.03335 7.29925 7.51720 7.57196 8.03466 8.13709 8.58686 8.94240
9.41417 9.81513 10.81284
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.020886 B = 0.001833 C = 0.001722
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1340.298469 B =15268.737815 C =16256.206110
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.114 4.114
2 C -0.103 4.103
3 C -0.092 4.092
4 C -0.128 4.128
5 C -0.027 4.027
6 C -0.122 4.122
7 C -0.134 4.134
8 C 0.558 3.442
9 O -0.527 6.527
10 N -0.720 5.720
11 C 0.154 3.846
12 H 0.091 0.909
13 C -0.152 4.152
14 C 0.077 3.923
15 H 0.081 0.919
16 C -0.185 4.185
17 N -0.657 5.657
18 C 0.050 3.950
19 C 0.449 3.551
20 O -0.563 6.563
21 N -0.591 5.591
22 C -0.305 4.305
23 H 0.120 0.880
24 C 0.041 3.959
25 N -0.881 5.881
26 Si 0.880 3.120
27 H -0.271 1.271
28 H -0.277 1.277
29 H -0.270 1.270
30 C -0.083 4.083
31 H 0.071 0.929
32 H 0.068 0.932
33 H 0.067 0.933
34 H 0.125 0.875
35 H 0.128 0.872
36 H 0.075 0.925
37 H 0.056 0.944
38 H 0.097 0.903
39 H 0.395 0.605
40 H 0.051 0.949
41 H 0.048 0.952
42 H 0.087 0.913
43 H 0.061 0.939
44 H 0.058 0.942
45 H 0.058 0.942
46 H 0.355 0.645
47 H 0.087 0.913
48 H 0.045 0.955
49 H 0.370 0.630
50 H 0.273 0.727
51 H 0.125 0.875
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.025 32.077 -0.125 33.919
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C -0.103 4.103
3 C -0.110 4.110
4 C -0.146 4.146
5 C -0.028 4.028
6 C -0.178 4.178
7 C -0.137 4.137
8 C 0.346 3.654
9 O -0.405 6.405
10 N -0.372 5.372
11 C 0.050 3.950
12 H 0.109 0.891
13 C -0.211 4.211
14 C -0.034 4.034
15 H 0.099 0.901
16 C -0.244 4.244
17 N -0.290 5.290
18 C -0.083 4.083
19 C 0.235 3.765
20 O -0.445 6.445
21 N -0.230 5.230
22 C -0.433 4.433
23 H 0.137 0.863
24 C -0.162 4.162
25 N -0.521 5.521
26 Si 0.706 3.294
27 H -0.197 1.197
28 H -0.202 1.202
29 H -0.195 1.195
30 C -0.102 4.102
31 H 0.090 0.910
32 H 0.087 0.913
33 H 0.086 0.914
34 H 0.143 0.857
35 H 0.146 0.854
36 H 0.094 0.906
37 H 0.075 0.925
38 H 0.115 0.885
39 H 0.230 0.770
40 H 0.070 0.930
41 H 0.068 0.932
42 H 0.106 0.894
43 H 0.080 0.920
44 H 0.077 0.923
45 H 0.077 0.923
46 H 0.175 0.825
47 H 0.105 0.895
48 H 0.063 0.937
49 H 0.203 0.797
50 H 0.084 0.916
51 H 0.143 0.857
Dipole moment (debyes) X Y Z Total
from point charges -9.151 31.828 0.401 33.120
hybrid contribution -2.610 -0.283 -0.700 2.717
sum -11.761 31.545 -0.299 33.667
Atomic orbital electron populations
1.20795 0.90716 1.03038 1.02538 1.19831 0.96357 0.92857 1.01251
1.21230 0.94201 0.97673 0.97926 1.21067 0.94072 0.97646 1.01824
1.20076 0.96997 0.91446 0.94325 1.21096 0.89932 1.03040 1.03748
1.19820 0.93438 0.93371 1.07108 1.18203 0.87206 0.83513 0.76492
1.90743 1.13586 1.86954 1.49238 1.46014 1.10685 1.05949 1.74507
1.20896 0.94615 0.80746 0.98786 0.89086 1.22040 1.01182 1.03035
0.94816 1.21758 0.95573 0.90186 0.95883 0.90109 1.22544 1.02025
1.01852 0.97935 1.59984 1.22948 0.99019 1.47016 1.21728 0.94434
0.90658 1.01474 1.19692 0.88608 0.84086 0.84112 1.90579 1.13983
1.86537 1.53354 1.42200 1.08138 1.06203 1.66472 1.19433 0.95069
0.81365 1.47482 0.86260 1.25044 0.98411 0.95058 0.97691 1.69623
1.35754 0.97577 1.49135 0.86669 0.85418 0.78418 0.78851 1.19694
1.20174 1.19504 1.21156 0.92770 0.98006 0.98254 0.91036 0.91348
0.91389 0.85663 0.85362 0.90644 0.92518 0.88492 0.76993 0.93012
0.93241 0.89428 0.92017 0.92256 0.92262 0.82492 0.89462 0.93678
0.79736 0.91615 0.85740
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.49 10.01 36.01 0.36 -0.13 16
2 C -0.10 -0.68 5.87 -104.68 -0.61 -1.30 16
3 C -0.09 -0.60 9.69 -39.49 -0.38 -0.98 16
4 C -0.13 -0.95 9.66 -39.64 -0.38 -1.33 16
5 C -0.03 -0.26 5.91 -104.23 -0.62 -0.87 16
6 C -0.12 -1.15 8.74 36.01 0.31 -0.84 16
7 C -0.13 -1.30 5.87 -104.97 -0.62 -1.91 16
8 C 0.56 6.31 7.67 -12.33 -0.09 6.22 16
9 O -0.53 -7.57 13.00 5.32 0.07 -7.50 16
10 N -0.72 -6.72 4.33 -54.75 -0.24 -6.96 16
11 C 0.15 1.72 2.34 -67.93 -0.16 1.57 16
12 H 0.09 1.22 7.58 -51.93 -0.39 0.82 16
13 C -0.15 -1.87 9.33 37.15 0.35 -1.53 16
14 C 0.08 0.82 2.22 -67.71 -0.15 0.67 16
15 H 0.08 0.77 7.80 -51.93 -0.41 0.36 16
16 C -0.18 -1.73 9.00 37.16 0.33 -1.39 16
17 N -0.66 -9.44 5.11 -107.99 -0.55 -10.00 16
18 C 0.05 0.77 5.97 -4.97 -0.03 0.74 16
19 C 0.45 9.94 7.82 -10.99 -0.09 9.86 16
20 O -0.56 -14.89 15.78 5.55 0.09 -14.80 16
21 N -0.59 -13.83 5.09 -10.96 -0.06 -13.89 16
22 C -0.30 -8.57 10.16 -14.94 -0.15 -8.72 16
23 H 0.12 3.85 7.39 -52.48 -0.39 3.46 16
24 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16
25 N -0.88 -25.66 13.96 55.50 0.77 -24.88 16
26 Si 0.88 19.16 27.74 -169.99 -4.71 14.44 16
27 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16
28 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16
29 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16
30 C -0.08 -0.62 9.17 -39.19 -0.36 -0.98 16
31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16
32 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16
33 H 0.07 0.23 8.08 -51.93 -0.42 -0.18 16
34 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16
35 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16
36 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16
37 H 0.06 0.42 8.04 -51.93 -0.42 0.00 16
38 H 0.10 1.12 5.85 -51.93 -0.30 0.82 16
39 H 0.40 2.68 6.46 -40.82 -0.26 2.42 16
40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
41 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
42 H 0.09 1.25 7.61 -51.93 -0.39 0.86 16
43 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16
44 H 0.06 0.56 7.45 -51.93 -0.39 0.17 16
45 H 0.06 0.46 7.45 -51.93 -0.39 0.07 16
46 H 0.35 5.46 8.17 -39.30 -0.32 5.14 16
47 H 0.09 1.21 8.06 -51.93 -0.42 0.79 16
48 H 0.05 0.61 7.44 -51.93 -0.39 0.22 16
49 H 0.37 7.56 5.76 -40.82 -0.24 7.33 16
50 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16
51 H 0.12 0.65 6.46 -52.49 -0.34 0.32 16
LS Contribution 413.47 15.07 6.23 6.23
Total: -1.00 -33.91 413.47 -8.79 -42.70
By element:
Atomic # 1 Polarization: 22.57 SS G_CDS: -8.01 Total: 14.57 kcal
Atomic # 6 Polarization: 2.47 SS G_CDS: -2.38 Total: 0.09 kcal
Atomic # 7 Polarization: -55.66 SS G_CDS: -0.07 Total: -55.73 kcal
Atomic # 8 Polarization: -22.46 SS G_CDS: 0.16 Total: -22.30 kcal
Atomic # 14 Polarization: 19.16 SS G_CDS: -4.71 Total: 14.44 kcal
Total LS contribution 6.23 Total: 6.23 kcal
Total: -33.91 -8.79 -42.70 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001725119668.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -7.103 kcal
(2) G-P(sol) polarization free energy of solvation -33.910 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.013 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.698 kcal
(6) G-S(sol) free energy of system = (1) + (5) -49.801 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds