Wall clock time and date at job start Wed Apr 1 2020 05:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38382 * 119.92734 * 2 1 4 4 C 1.38339 * 120.28824 * 180.02562 * 3 2 1 5 5 C 1.37969 * 120.15018 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.07714 * 179.97438 * 5 4 3 7 7 C 1.39559 * 119.85223 * 359.97438 * 5 4 3 8 8 C 1.47843 * 120.14457 * 179.97438 * 7 5 4 9 9 O 1.21549 * 120.00445 * 354.01909 * 8 7 5 10 10 N 1.34776 * 119.99882 * 174.01996 * 8 7 5 11 11 C 1.46505 * 120.00077 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.47213 * 324.99521 * 11 10 8 13 13 C 1.52994 * 109.47103 * 84.99752 * 11 10 8 14 14 C 1.53003 * 109.47087 * 204.99857 * 11 10 8 15 15 H 1.08995 * 109.46852 * 299.99853 * 14 11 10 16 16 C 1.53003 * 109.47165 * 59.99826 * 14 11 10 17 17 N 1.46897 * 109.46893 * 179.97438 * 14 11 10 18 18 C 1.46905 * 110.99907 * 154.99693 * 17 14 11 19 19 C 1.50702 * 109.47315 * 179.97438 * 18 17 14 20 20 O 1.21294 * 119.99946 * 0.02562 * 19 18 17 21 21 N 1.34772 * 119.99730 * 180.02562 * 19 18 17 22 22 C 1.37095 * 119.99782 * 180.02562 * 21 19 18 23 23 H 1.08004 * 119.99916 * 359.97438 * 22 21 19 24 24 C 1.38947 * 120.00304 * 179.97438 * 22 21 19 25 25 N 1.31417 * 120.00291 * 179.97438 * 24 22 21 26 26 Si 1.86798 * 119.99968 * 359.97438 * 24 22 21 27 27 H 1.48499 * 109.47247 * 89.99536 * 26 24 22 28 28 H 1.48498 * 109.47422 * 210.00170 * 26 24 22 29 29 H 1.48500 * 109.47028 * 330.00098 * 26 24 22 30 30 C 1.37936 * 119.92647 * 180.25890 * 2 1 3 31 31 H 1.08996 * 109.46880 * 89.99990 * 1 2 3 32 32 H 1.09000 * 109.46779 * 210.00110 * 1 2 3 33 33 H 1.09002 * 109.46964 * 329.99681 * 1 2 3 34 34 H 1.07994 * 119.85696 * 359.97438 * 3 2 1 35 35 H 1.08011 * 119.92376 * 179.97438 * 4 3 2 36 36 H 1.08996 * 109.47440 * 263.43170 * 6 5 4 37 37 H 1.09000 * 109.46754 * 23.43374 * 6 5 4 38 38 H 1.09003 * 109.47293 * 143.42816 * 6 5 4 39 39 H 0.97001 * 120.00135 * 359.97438 * 10 8 7 40 40 H 1.09001 * 109.47165 * 299.99682 * 13 11 10 41 41 H 1.08995 * 109.47792 * 60.00057 * 13 11 10 42 42 H 1.09003 * 109.47179 * 180.02562 * 13 11 10 43 43 H 1.08995 * 109.47027 * 59.99729 * 16 14 11 44 44 H 1.09001 * 109.47096 * 180.02562 * 16 14 11 45 45 H 1.09002 * 109.46681 * 300.00086 * 16 14 11 46 46 H 1.00892 * 111.00232 * 278.95115 * 17 14 11 47 47 H 1.08995 * 109.47099 * 300.00603 * 18 17 14 48 48 H 1.09005 * 109.47027 * 60.00041 * 18 17 14 49 49 H 0.96998 * 120.00146 * 0.02562 * 21 19 18 50 50 H 0.96996 * 120.00069 * 179.97438 * 25 24 22 51 51 H 1.07998 * 120.07693 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5808 1.2080 -0.0005 5 6 4.2812 0.0194 -0.0016 6 6 5.7882 0.0308 -0.0028 7 6 3.5911 -1.1937 -0.0016 8 6 4.3352 -2.4712 -0.0033 9 8 5.5456 -2.4694 -0.1144 10 7 3.6714 -3.6378 0.1183 11 6 4.4088 -4.9038 0.1171 12 1 5.2615 -4.8270 -0.5575 13 6 4.9040 -5.2068 1.5327 14 6 3.4866 -6.0307 -0.3527 15 1 2.6340 -6.1074 0.3219 16 6 2.9914 -5.7276 -1.7683 17 7 4.2262 -7.2999 -0.3544 18 6 3.3129 -8.4416 -0.2112 19 6 4.1057 -9.7231 -0.2178 20 8 5.3130 -9.6888 -0.3302 21 7 3.4734 -10.9073 -0.0988 22 6 4.1947 -12.0731 -0.1043 23 1 5.2696 -12.0426 -0.2044 24 6 3.5429 -13.2940 0.0190 25 7 4.2343 -14.4116 0.0132 26 14 1.6838 -13.3469 0.1928 27 1 1.0629 -13.4329 -1.1534 28 1 1.2950 -14.5352 0.9941 29 1 1.2153 -12.1144 0.8760 30 6 2.1952 -1.1954 -0.0054 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5139 34 1 1.6539 2.1325 -0.0004 35 1 4.1137 2.1475 -0.0009 36 1 6.1517 -0.0836 -1.0240 37 1 6.1447 0.9762 0.4061 38 1 6.1583 -0.7921 0.6089 39 1 2.7055 -3.6393 0.2073 40 1 5.5610 -4.4040 1.8674 41 1 4.0514 -5.2836 2.2073 42 1 5.4530 -6.1484 1.5317 43 1 3.8441 -5.6508 -2.4428 44 1 2.3341 -6.5302 -2.1028 45 1 2.4428 -4.7857 -1.7673 46 1 4.7890 -7.3893 -1.1870 47 1 2.7684 -8.3555 0.7290 48 1 2.6061 -8.4477 -1.0411 49 1 2.5079 -10.9347 -0.0093 50 1 3.7793 -15.2639 0.0996 51 1 1.6552 -2.1307 -0.0100 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725119668.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:52 Heat of formation + Delta-G solvation = -49.800957 kcal Electronic energy + Delta-G solvation = -29886.622065 eV Core-core repulsion = 25785.615754 eV Total energy + Delta-G solvation = -4101.006312 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.78717 -39.16897 -38.51700 -37.27731 -34.83000 -34.01019 -33.82015 -32.16400 -31.66561 -30.42578 -29.68169 -29.32599 -26.51837 -25.49788 -24.43753 -24.03941 -23.14368 -21.71291 -20.72884 -20.35494 -19.39722 -18.40615 -17.68938 -16.62332 -16.07851 -15.94017 -15.66862 -15.38122 -15.34476 -15.04612 -14.82932 -14.30713 -14.20868 -13.98137 -13.87306 -13.66919 -13.38004 -13.28918 -13.21480 -13.06974 -12.94088 -12.59659 -12.39594 -12.29147 -12.07212 -12.04799 -11.99055 -11.89539 -11.65188 -11.60904 -11.47769 -11.32891 -11.17455 -10.74471 -10.61110 -9.98553 -9.77822 -9.58405 -9.44029 -9.23959 -8.85471 -8.60626 -8.21135 -8.15327 -6.31825 -3.83354 0.50527 0.91844 2.61243 2.87342 3.00972 3.04952 3.13725 3.46203 3.72703 4.07997 4.11824 4.29233 4.34636 4.36934 4.56091 4.62075 4.76005 4.77390 4.93987 4.98948 5.06826 5.08743 5.14694 5.20712 5.29065 5.32219 5.39144 5.43410 5.53039 5.54726 5.58055 5.60661 5.62407 5.68896 5.79959 5.82391 5.88869 5.91591 5.97266 6.01564 6.04596 6.08232 6.26347 6.35627 6.50957 6.53891 7.03335 7.29925 7.51720 7.57196 8.03466 8.13709 8.58686 8.94240 9.41417 9.81513 10.81284 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020886 B = 0.001833 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.298469 B =15268.737815 C =16256.206110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.103 4.103 3 C -0.092 4.092 4 C -0.128 4.128 5 C -0.027 4.027 6 C -0.122 4.122 7 C -0.134 4.134 8 C 0.558 3.442 9 O -0.527 6.527 10 N -0.720 5.720 11 C 0.154 3.846 12 H 0.091 0.909 13 C -0.152 4.152 14 C 0.077 3.923 15 H 0.081 0.919 16 C -0.185 4.185 17 N -0.657 5.657 18 C 0.050 3.950 19 C 0.449 3.551 20 O -0.563 6.563 21 N -0.591 5.591 22 C -0.305 4.305 23 H 0.120 0.880 24 C 0.041 3.959 25 N -0.881 5.881 26 Si 0.880 3.120 27 H -0.271 1.271 28 H -0.277 1.277 29 H -0.270 1.270 30 C -0.083 4.083 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.097 0.903 39 H 0.395 0.605 40 H 0.051 0.949 41 H 0.048 0.952 42 H 0.087 0.913 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.355 0.645 47 H 0.087 0.913 48 H 0.045 0.955 49 H 0.370 0.630 50 H 0.273 0.727 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.025 32.077 -0.125 33.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.103 4.103 3 C -0.110 4.110 4 C -0.146 4.146 5 C -0.028 4.028 6 C -0.178 4.178 7 C -0.137 4.137 8 C 0.346 3.654 9 O -0.405 6.405 10 N -0.372 5.372 11 C 0.050 3.950 12 H 0.109 0.891 13 C -0.211 4.211 14 C -0.034 4.034 15 H 0.099 0.901 16 C -0.244 4.244 17 N -0.290 5.290 18 C -0.083 4.083 19 C 0.235 3.765 20 O -0.445 6.445 21 N -0.230 5.230 22 C -0.433 4.433 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.521 5.521 26 Si 0.706 3.294 27 H -0.197 1.197 28 H -0.202 1.202 29 H -0.195 1.195 30 C -0.102 4.102 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.115 0.885 39 H 0.230 0.770 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.106 0.894 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.175 0.825 47 H 0.105 0.895 48 H 0.063 0.937 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.151 31.828 0.401 33.120 hybrid contribution -2.610 -0.283 -0.700 2.717 sum -11.761 31.545 -0.299 33.667 Atomic orbital electron populations 1.20795 0.90716 1.03038 1.02538 1.19831 0.96357 0.92857 1.01251 1.21230 0.94201 0.97673 0.97926 1.21067 0.94072 0.97646 1.01824 1.20076 0.96997 0.91446 0.94325 1.21096 0.89932 1.03040 1.03748 1.19820 0.93438 0.93371 1.07108 1.18203 0.87206 0.83513 0.76492 1.90743 1.13586 1.86954 1.49238 1.46014 1.10685 1.05949 1.74507 1.20896 0.94615 0.80746 0.98786 0.89086 1.22040 1.01182 1.03035 0.94816 1.21758 0.95573 0.90186 0.95883 0.90109 1.22544 1.02025 1.01852 0.97935 1.59984 1.22948 0.99019 1.47016 1.21728 0.94434 0.90658 1.01474 1.19692 0.88608 0.84086 0.84112 1.90579 1.13983 1.86537 1.53354 1.42200 1.08138 1.06203 1.66472 1.19433 0.95069 0.81365 1.47482 0.86260 1.25044 0.98411 0.95058 0.97691 1.69623 1.35754 0.97577 1.49135 0.86669 0.85418 0.78418 0.78851 1.19694 1.20174 1.19504 1.21156 0.92770 0.98006 0.98254 0.91036 0.91348 0.91389 0.85663 0.85362 0.90644 0.92518 0.88492 0.76993 0.93012 0.93241 0.89428 0.92017 0.92256 0.92262 0.82492 0.89462 0.93678 0.79736 0.91615 0.85740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.49 10.01 36.01 0.36 -0.13 16 2 C -0.10 -0.68 5.87 -104.68 -0.61 -1.30 16 3 C -0.09 -0.60 9.69 -39.49 -0.38 -0.98 16 4 C -0.13 -0.95 9.66 -39.64 -0.38 -1.33 16 5 C -0.03 -0.26 5.91 -104.23 -0.62 -0.87 16 6 C -0.12 -1.15 8.74 36.01 0.31 -0.84 16 7 C -0.13 -1.30 5.87 -104.97 -0.62 -1.91 16 8 C 0.56 6.31 7.67 -12.33 -0.09 6.22 16 9 O -0.53 -7.57 13.00 5.32 0.07 -7.50 16 10 N -0.72 -6.72 4.33 -54.75 -0.24 -6.96 16 11 C 0.15 1.72 2.34 -67.93 -0.16 1.57 16 12 H 0.09 1.22 7.58 -51.93 -0.39 0.82 16 13 C -0.15 -1.87 9.33 37.15 0.35 -1.53 16 14 C 0.08 0.82 2.22 -67.71 -0.15 0.67 16 15 H 0.08 0.77 7.80 -51.93 -0.41 0.36 16 16 C -0.18 -1.73 9.00 37.16 0.33 -1.39 16 17 N -0.66 -9.44 5.11 -107.99 -0.55 -10.00 16 18 C 0.05 0.77 5.97 -4.97 -0.03 0.74 16 19 C 0.45 9.94 7.82 -10.99 -0.09 9.86 16 20 O -0.56 -14.89 15.78 5.55 0.09 -14.80 16 21 N -0.59 -13.83 5.09 -10.96 -0.06 -13.89 16 22 C -0.30 -8.57 10.16 -14.94 -0.15 -8.72 16 23 H 0.12 3.85 7.39 -52.48 -0.39 3.46 16 24 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 25 N -0.88 -25.66 13.96 55.50 0.77 -24.88 16 26 Si 0.88 19.16 27.74 -169.99 -4.71 14.44 16 27 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 28 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 29 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 30 C -0.08 -0.62 9.17 -39.19 -0.36 -0.98 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 33 H 0.07 0.23 8.08 -51.93 -0.42 -0.18 16 34 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 35 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.42 8.04 -51.93 -0.42 0.00 16 38 H 0.10 1.12 5.85 -51.93 -0.30 0.82 16 39 H 0.40 2.68 6.46 -40.82 -0.26 2.42 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.09 1.25 7.61 -51.93 -0.39 0.86 16 43 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 44 H 0.06 0.56 7.45 -51.93 -0.39 0.17 16 45 H 0.06 0.46 7.45 -51.93 -0.39 0.07 16 46 H 0.35 5.46 8.17 -39.30 -0.32 5.14 16 47 H 0.09 1.21 8.06 -51.93 -0.42 0.79 16 48 H 0.05 0.61 7.44 -51.93 -0.39 0.22 16 49 H 0.37 7.56 5.76 -40.82 -0.24 7.33 16 50 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 51 H 0.12 0.65 6.46 -52.49 -0.34 0.32 16 LS Contribution 413.47 15.07 6.23 6.23 Total: -1.00 -33.91 413.47 -8.79 -42.70 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: -8.01 Total: 14.57 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -2.38 Total: 0.09 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: -0.07 Total: -55.73 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: 0.16 Total: -22.30 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.71 Total: 14.44 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.91 -8.79 -42.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725119668.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.103 kcal (2) G-P(sol) polarization free energy of solvation -33.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds