Wall clock time and date at job start Wed Apr 1 2020 05:04:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 C 1.38382 * 119.92734 * 2 1
4 4 C 1.38339 * 120.28824 * 180.02562 * 3 2 1
5 5 C 1.37969 * 120.15018 * 0.02562 * 4 3 2
6 6 C 1.50704 * 120.07714 * 179.97438 * 5 4 3
7 7 C 1.39559 * 119.85223 * 359.97438 * 5 4 3
8 8 C 1.47843 * 120.14457 * 179.97438 * 7 5 4
9 9 O 1.21549 * 120.00445 * 354.01909 * 8 7 5
10 10 N 1.34776 * 119.99882 * 174.01996 * 8 7 5
11 11 C 1.46505 * 120.00077 * 180.02562 * 10 8 7
12 12 H 1.09004 * 109.47213 * 324.99521 * 11 10 8
13 13 C 1.52994 * 109.47103 * 84.99752 * 11 10 8
14 14 C 1.53003 * 109.47087 * 204.99857 * 11 10 8
15 15 H 1.08995 * 109.46852 * 299.99853 * 14 11 10
16 16 C 1.53003 * 109.47165 * 59.99826 * 14 11 10
17 17 N 1.46897 * 109.46893 * 179.97438 * 14 11 10
18 18 C 1.46905 * 110.99907 * 154.99693 * 17 14 11
19 19 C 1.50702 * 109.47315 * 179.97438 * 18 17 14
20 20 O 1.21294 * 119.99946 * 0.02562 * 19 18 17
21 21 N 1.34772 * 119.99730 * 180.02562 * 19 18 17
22 22 C 1.37095 * 119.99782 * 180.02562 * 21 19 18
23 23 H 1.08004 * 119.99916 * 359.97438 * 22 21 19
24 24 C 1.38947 * 120.00304 * 179.97438 * 22 21 19
25 25 N 1.31417 * 120.00291 * 179.97438 * 24 22 21
26 26 Si 1.86798 * 119.99968 * 359.97438 * 24 22 21
27 27 H 1.48499 * 109.47247 * 89.99536 * 26 24 22
28 28 H 1.48498 * 109.47422 * 210.00170 * 26 24 22
29 29 H 1.48500 * 109.47028 * 330.00098 * 26 24 22
30 30 C 1.37936 * 119.92647 * 180.25890 * 2 1 3
31 31 H 1.08996 * 109.46880 * 89.99990 * 1 2 3
32 32 H 1.09000 * 109.46779 * 210.00110 * 1 2 3
33 33 H 1.09002 * 109.46964 * 329.99681 * 1 2 3
34 34 H 1.07994 * 119.85696 * 359.97438 * 3 2 1
35 35 H 1.08011 * 119.92376 * 179.97438 * 4 3 2
36 36 H 1.08996 * 109.47440 * 263.43170 * 6 5 4
37 37 H 1.09000 * 109.46754 * 23.43374 * 6 5 4
38 38 H 1.09003 * 109.47293 * 143.42816 * 6 5 4
39 39 H 0.97001 * 120.00135 * 359.97438 * 10 8 7
40 40 H 1.09001 * 109.47165 * 299.99682 * 13 11 10
41 41 H 1.08995 * 109.47792 * 60.00057 * 13 11 10
42 42 H 1.09003 * 109.47179 * 180.02562 * 13 11 10
43 43 H 1.08995 * 109.47027 * 59.99729 * 16 14 11
44 44 H 1.09001 * 109.47096 * 180.02562 * 16 14 11
45 45 H 1.09002 * 109.46681 * 300.00086 * 16 14 11
46 46 H 1.00892 * 111.00232 * 278.95115 * 17 14 11
47 47 H 1.08995 * 109.47099 * 300.00603 * 18 17 14
48 48 H 1.09005 * 109.47027 * 60.00041 * 18 17 14
49 49 H 0.96998 * 120.00146 * 0.02562 * 21 19 18
50 50 H 0.96996 * 120.00069 * 179.97438 * 25 24 22
51 51 H 1.07998 * 120.07693 * 0.02562 * 30 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1974 1.1993 0.0000
4 6 3.5808 1.2080 -0.0005
5 6 4.2812 0.0194 -0.0016
6 6 5.7882 0.0308 -0.0028
7 6 3.5911 -1.1937 -0.0016
8 6 4.3352 -2.4712 -0.0033
9 8 5.5456 -2.4694 -0.1144
10 7 3.6714 -3.6378 0.1183
11 6 4.4088 -4.9038 0.1171
12 1 5.2615 -4.8270 -0.5575
13 6 4.9040 -5.2068 1.5327
14 6 3.4866 -6.0307 -0.3527
15 1 2.6340 -6.1074 0.3219
16 6 2.9914 -5.7276 -1.7683
17 7 4.2262 -7.2999 -0.3544
18 6 3.3129 -8.4416 -0.2112
19 6 4.1057 -9.7231 -0.2178
20 8 5.3130 -9.6888 -0.3302
21 7 3.4734 -10.9073 -0.0988
22 6 4.1947 -12.0731 -0.1043
23 1 5.2696 -12.0426 -0.2044
24 6 3.5429 -13.2940 0.0190
25 7 4.2343 -14.4116 0.0132
26 14 1.6838 -13.3469 0.1928
27 1 1.0629 -13.4329 -1.1534
28 1 1.2950 -14.5352 0.9941
29 1 1.2153 -12.1144 0.8760
30 6 2.1952 -1.1954 -0.0054
31 1 -0.3633 0.0000 -1.0276
32 1 -0.3633 -0.8900 0.5139
33 1 -0.3633 0.8900 0.5139
34 1 1.6539 2.1325 -0.0004
35 1 4.1137 2.1475 -0.0009
36 1 6.1517 -0.0836 -1.0240
37 1 6.1447 0.9762 0.4061
38 1 6.1583 -0.7921 0.6089
39 1 2.7055 -3.6393 0.2073
40 1 5.5610 -4.4040 1.8674
41 1 4.0514 -5.2836 2.2073
42 1 5.4530 -6.1484 1.5317
43 1 3.8441 -5.6508 -2.4428
44 1 2.3341 -6.5302 -2.1028
45 1 2.4428 -4.7857 -1.7673
46 1 4.7890 -7.3893 -1.1870
47 1 2.7684 -8.3555 0.7290
48 1 2.6061 -8.4477 -1.0411
49 1 2.5079 -10.9347 -0.0093
50 1 3.7793 -15.2639 0.0996
51 1 1.6552 -2.1307 -0.0100
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001725119668.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:04:51
Heat of formation + Delta-G solvation = -74.289722 kcal
Electronic energy + Delta-G solvation = -29887.683978 eV
Core-core repulsion = 25785.615754 eV
Total energy + Delta-G solvation = -4102.068224 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-41.53890 -40.38126 -39.70092 -38.35814 -36.11687 -35.58260 -34.52514 -33.74219
-32.93611 -31.29595 -30.52739 -29.94038 -28.05455 -26.07187 -25.66955 -25.09609
-24.04419 -22.41106 -21.66890 -21.25170 -21.07135 -20.25788 -18.49662 -17.65920
-17.48828 -16.86610 -16.53243 -16.47917 -16.29095 -16.23601 -15.80821 -15.50786
-15.17611 -15.07225 -14.78469 -14.71372 -14.43827 -14.33754 -14.24127 -13.98683
-13.87784 -13.73247 -13.51281 -13.37837 -13.09366 -13.02074 -12.77948 -12.72551
-12.54745 -12.51802 -12.43867 -12.40034 -12.21805 -11.99502 -11.97039 -11.66251
-11.49668 -10.65342 -10.43395 -10.23765 -10.21472 -9.89777 -9.42591 -9.28369
-8.39956 -6.01104 -0.11305 0.37815 1.31123 1.36974 1.46083 1.87579
1.98187 2.02333 2.24539 2.80200 2.84391 3.16649 3.45158 3.60800
3.73307 3.84924 3.88436 4.02394 4.07773 4.17417 4.22643 4.29603
4.44437 4.44680 4.49011 4.56992 4.60690 4.64889 4.73970 4.79832
4.80045 4.84719 4.87261 4.91183 4.95643 5.00512 5.08070 5.19259
5.23375 5.31266 5.35282 5.39218 5.52452 5.56627 5.59756 5.62740
5.92213 5.98133 6.06290 6.34081 6.54982 6.61175 6.89874 7.23595
7.41518 7.99000 8.77796
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.020886 B = 0.001833 C = 0.001722
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1340.298469 B =15268.737815 C =16256.206110
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.113 4.113
2 C -0.105 4.105
3 C -0.091 4.091
4 C -0.132 4.132
5 C -0.052 4.052
6 C -0.116 4.116
7 C -0.154 4.154
8 C 0.553 3.447
9 O -0.568 6.568
10 N -0.704 5.704
11 C 0.161 3.839
12 H 0.062 0.938
13 C -0.145 4.145
14 C 0.086 3.914
15 H 0.108 0.892
16 C -0.179 4.179
17 N -0.677 5.677
18 C 0.066 3.934
19 C 0.447 3.553
20 O -0.615 6.615
21 N -0.591 5.591
22 C -0.329 4.329
23 H 0.053 0.947
24 C -0.018 4.018
25 N -0.936 5.936
26 Si 0.967 3.033
27 H -0.257 1.257
28 H -0.277 1.277
29 H -0.228 1.228
30 C -0.084 4.084
31 H 0.079 0.921
32 H 0.076 0.924
33 H 0.078 0.922
34 H 0.152 0.848
35 H 0.146 0.854
36 H 0.063 0.937
37 H 0.074 0.926
38 H 0.070 0.930
39 H 0.412 0.588
40 H 0.036 0.964
41 H 0.066 0.934
42 H 0.063 0.937
43 H 0.045 0.955
44 H 0.067 0.933
45 H 0.079 0.921
46 H 0.345 0.655
47 H 0.118 0.882
48 H 0.081 0.919
49 H 0.390 0.610
50 H 0.279 0.721
51 H 0.147 0.853
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.684 34.633 0.187 38.443
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C -0.105 4.105
3 C -0.109 4.109
4 C -0.149 4.149
5 C -0.053 4.053
6 C -0.173 4.173
7 C -0.157 4.157
8 C 0.343 3.657
9 O -0.449 6.449
10 N -0.356 5.356
11 C 0.056 3.944
12 H 0.080 0.920
13 C -0.204 4.204
14 C -0.024 4.024
15 H 0.126 0.874
16 C -0.238 4.238
17 N -0.309 5.309
18 C -0.066 4.066
19 C 0.235 3.765
20 O -0.500 6.500
21 N -0.233 5.233
22 C -0.458 4.458
23 H 0.071 0.929
24 C -0.216 4.216
25 N -0.577 5.577
26 Si 0.787 3.213
27 H -0.181 1.181
28 H -0.202 1.202
29 H -0.151 1.151
30 C -0.102 4.102
31 H 0.097 0.903
32 H 0.095 0.905
33 H 0.097 0.903
34 H 0.169 0.831
35 H 0.164 0.836
36 H 0.082 0.918
37 H 0.093 0.907
38 H 0.089 0.911
39 H 0.250 0.750
40 H 0.055 0.945
41 H 0.085 0.915
42 H 0.082 0.918
43 H 0.064 0.936
44 H 0.086 0.914
45 H 0.098 0.902
46 H 0.164 0.836
47 H 0.136 0.864
48 H 0.099 0.901
49 H 0.226 0.774
50 H 0.088 0.912
51 H 0.165 0.835
Dipole moment (debyes) X Y Z Total
from point charges -14.858 34.421 0.719 37.498
hybrid contribution -0.708 -0.983 -0.802 1.453
sum -15.566 33.438 -0.084 36.884
Atomic orbital electron populations
1.20852 0.88726 1.04075 1.03309 1.20199 0.97801 0.92504 0.99991
1.21608 0.93891 0.98936 0.96450 1.21292 0.94804 0.97523 1.01324
1.20210 0.96750 0.92463 0.95830 1.20968 0.90835 1.02861 1.02608
1.19792 0.94496 0.92332 1.09090 1.18611 0.86889 0.84525 0.75711
1.90733 1.15476 1.87556 1.51140 1.45774 1.11322 1.04728 1.73802
1.20656 0.94394 0.81977 0.97377 0.91972 1.21939 1.01297 1.01149
0.95989 1.21751 0.95437 0.87775 0.97451 0.87421 1.22486 1.01713
1.03242 0.96373 1.59932 1.23762 1.00255 1.46957 1.21653 0.93706
0.86820 1.04453 1.21060 0.88536 0.85803 0.81074 1.90562 1.16981
1.87624 1.54813 1.42011 1.08845 1.05173 1.67224 1.18997 0.92912
0.84173 1.49710 0.92903 1.26163 1.05655 0.93630 0.96171 1.69816
1.39019 0.98649 1.50181 0.85338 0.76140 0.80055 0.79805 1.18112
1.20219 1.15122 1.21400 0.91722 0.99553 0.97534 0.90266 0.90478
0.90300 0.83067 0.83646 0.91811 0.90717 0.91128 0.75035 0.94516
0.91484 0.91800 0.93561 0.91389 0.90195 0.83604 0.86389 0.90081
0.77397 0.91202 0.83526
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.52 10.01 71.24 0.71 0.20 16
2 C -0.10 -1.05 5.87 -19.90 -0.12 -1.17 16
3 C -0.09 -0.91 9.69 22.33 0.22 -0.69 16
4 C -0.13 -1.72 9.66 22.23 0.21 -1.51 16
5 C -0.05 -0.95 5.91 -19.61 -0.12 -1.07 16
6 C -0.12 -2.34 8.74 71.24 0.62 -1.71 16
7 C -0.15 -2.85 5.87 -20.09 -0.12 -2.97 16
8 C 0.55 12.61 7.67 86.79 0.67 13.27 16
9 O -0.57 -17.43 13.00 -3.87 -0.05 -17.48 16
10 N -0.70 -12.19 4.33 -445.40 -1.93 -14.12 16
11 C 0.16 3.53 2.34 44.99 0.11 3.63 16
12 H 0.06 1.75 7.58 -2.38 -0.02 1.73 16
13 C -0.15 -3.58 9.33 71.98 0.67 -2.91 16
14 C 0.09 1.60 2.22 44.92 0.10 1.70 16
15 H 0.11 1.50 7.80 -2.39 -0.02 1.48 16
16 C -0.18 -2.82 9.00 71.98 0.65 -2.17 16
17 N -0.68 -18.56 5.11 -495.56 -2.53 -21.09 16
18 C 0.07 1.83 5.97 85.56 0.51 2.35 16
19 C 0.45 19.67 7.82 87.66 0.69 20.36 16
20 O -0.62 -34.01 15.78 -3.07 -0.05 -34.06 16
21 N -0.59 -27.27 5.09 -306.99 -1.56 -28.83 16
22 C -0.33 -19.21 10.16 84.04 0.85 -18.35 16
23 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16
24 C -0.02 -0.99 5.50 84.92 0.47 -0.52 16
25 N -0.94 -56.55 13.96 21.66 0.30 -56.25 16
26 Si 0.97 38.12 27.74 68.60 1.90 40.02 16
27 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16
28 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16
29 H -0.23 -7.41 6.52 99.48 0.65 -6.76 16
30 C -0.08 -1.03 9.17 22.53 0.21 -0.82 16
31 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16
32 H 0.08 0.24 8.08 -2.39 -0.02 0.22 16
33 H 0.08 0.21 8.08 -2.39 -0.02 0.19 16
34 H 0.15 0.68 8.06 -2.91 -0.02 0.66 16
35 H 0.15 1.28 8.06 -2.90 -0.02 1.26 16
36 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16
37 H 0.07 1.13 8.04 -2.39 -0.02 1.11 16
38 H 0.07 1.79 5.85 -2.39 -0.01 1.78 16
39 H 0.41 4.28 6.46 -92.71 -0.60 3.68 16
40 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16
41 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16
42 H 0.06 1.88 7.61 -2.39 -0.02 1.86 16
43 H 0.05 0.88 8.13 -2.39 -0.02 0.86 16
44 H 0.07 0.99 7.45 -2.39 -0.02 0.97 16
45 H 0.08 0.93 7.45 -2.39 -0.02 0.92 16
46 H 0.34 10.67 8.17 -89.70 -0.73 9.94 16
47 H 0.12 2.66 8.06 -2.39 -0.02 2.65 16
48 H 0.08 1.76 7.44 -2.38 -0.02 1.74 16
49 H 0.39 14.64 5.76 -92.71 -0.53 14.11 16
50 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16
51 H 0.15 0.99 6.46 -2.91 -0.02 0.97 16
Total: -1.00 -83.10 413.47 1.45 -81.64
By element:
Atomic # 1 Polarization: 43.49 SS G_CDS: -0.96 Total: 42.54 kcal
Atomic # 6 Polarization: 1.30 SS G_CDS: 6.33 Total: 7.62 kcal
Atomic # 7 Polarization: -114.57 SS G_CDS: -5.72 Total: -120.29 kcal
Atomic # 8 Polarization: -51.43 SS G_CDS: -0.10 Total: -51.53 kcal
Atomic # 14 Polarization: 38.12 SS G_CDS: 1.90 Total: 40.02 kcal
Total: -83.10 1.45 -81.64 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001725119668.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.355 kcal
(2) G-P(sol) polarization free energy of solvation -83.098 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.743 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.453 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.645 kcal
(6) G-S(sol) free energy of system = (1) + (5) -74.290 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds