Wall clock time and date at job start Wed Apr 1 2020 05:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38382 * 119.92734 * 2 1 4 4 C 1.38339 * 120.28824 * 180.02562 * 3 2 1 5 5 C 1.37969 * 120.15018 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.07714 * 179.97438 * 5 4 3 7 7 C 1.39559 * 119.85223 * 359.97438 * 5 4 3 8 8 C 1.47843 * 120.14457 * 179.97438 * 7 5 4 9 9 O 1.21549 * 120.00445 * 354.01909 * 8 7 5 10 10 N 1.34776 * 119.99882 * 174.01996 * 8 7 5 11 11 C 1.46505 * 120.00077 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.47213 * 324.99521 * 11 10 8 13 13 C 1.52994 * 109.47103 * 84.99752 * 11 10 8 14 14 C 1.53003 * 109.47087 * 204.99857 * 11 10 8 15 15 H 1.08995 * 109.46852 * 299.99853 * 14 11 10 16 16 C 1.53003 * 109.47165 * 59.99826 * 14 11 10 17 17 N 1.46897 * 109.46893 * 179.97438 * 14 11 10 18 18 C 1.46905 * 110.99907 * 154.99693 * 17 14 11 19 19 C 1.50702 * 109.47315 * 179.97438 * 18 17 14 20 20 O 1.21294 * 119.99946 * 0.02562 * 19 18 17 21 21 N 1.34772 * 119.99730 * 180.02562 * 19 18 17 22 22 C 1.37095 * 119.99782 * 180.02562 * 21 19 18 23 23 H 1.08004 * 119.99916 * 359.97438 * 22 21 19 24 24 C 1.38947 * 120.00304 * 179.97438 * 22 21 19 25 25 N 1.31417 * 120.00291 * 179.97438 * 24 22 21 26 26 Si 1.86798 * 119.99968 * 359.97438 * 24 22 21 27 27 H 1.48499 * 109.47247 * 89.99536 * 26 24 22 28 28 H 1.48498 * 109.47422 * 210.00170 * 26 24 22 29 29 H 1.48500 * 109.47028 * 330.00098 * 26 24 22 30 30 C 1.37936 * 119.92647 * 180.25890 * 2 1 3 31 31 H 1.08996 * 109.46880 * 89.99990 * 1 2 3 32 32 H 1.09000 * 109.46779 * 210.00110 * 1 2 3 33 33 H 1.09002 * 109.46964 * 329.99681 * 1 2 3 34 34 H 1.07994 * 119.85696 * 359.97438 * 3 2 1 35 35 H 1.08011 * 119.92376 * 179.97438 * 4 3 2 36 36 H 1.08996 * 109.47440 * 263.43170 * 6 5 4 37 37 H 1.09000 * 109.46754 * 23.43374 * 6 5 4 38 38 H 1.09003 * 109.47293 * 143.42816 * 6 5 4 39 39 H 0.97001 * 120.00135 * 359.97438 * 10 8 7 40 40 H 1.09001 * 109.47165 * 299.99682 * 13 11 10 41 41 H 1.08995 * 109.47792 * 60.00057 * 13 11 10 42 42 H 1.09003 * 109.47179 * 180.02562 * 13 11 10 43 43 H 1.08995 * 109.47027 * 59.99729 * 16 14 11 44 44 H 1.09001 * 109.47096 * 180.02562 * 16 14 11 45 45 H 1.09002 * 109.46681 * 300.00086 * 16 14 11 46 46 H 1.00892 * 111.00232 * 278.95115 * 17 14 11 47 47 H 1.08995 * 109.47099 * 300.00603 * 18 17 14 48 48 H 1.09005 * 109.47027 * 60.00041 * 18 17 14 49 49 H 0.96998 * 120.00146 * 0.02562 * 21 19 18 50 50 H 0.96996 * 120.00069 * 179.97438 * 25 24 22 51 51 H 1.07998 * 120.07693 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5808 1.2080 -0.0005 5 6 4.2812 0.0194 -0.0016 6 6 5.7882 0.0308 -0.0028 7 6 3.5911 -1.1937 -0.0016 8 6 4.3352 -2.4712 -0.0033 9 8 5.5456 -2.4694 -0.1144 10 7 3.6714 -3.6378 0.1183 11 6 4.4088 -4.9038 0.1171 12 1 5.2615 -4.8270 -0.5575 13 6 4.9040 -5.2068 1.5327 14 6 3.4866 -6.0307 -0.3527 15 1 2.6340 -6.1074 0.3219 16 6 2.9914 -5.7276 -1.7683 17 7 4.2262 -7.2999 -0.3544 18 6 3.3129 -8.4416 -0.2112 19 6 4.1057 -9.7231 -0.2178 20 8 5.3130 -9.6888 -0.3302 21 7 3.4734 -10.9073 -0.0988 22 6 4.1947 -12.0731 -0.1043 23 1 5.2696 -12.0426 -0.2044 24 6 3.5429 -13.2940 0.0190 25 7 4.2343 -14.4116 0.0132 26 14 1.6838 -13.3469 0.1928 27 1 1.0629 -13.4329 -1.1534 28 1 1.2950 -14.5352 0.9941 29 1 1.2153 -12.1144 0.8760 30 6 2.1952 -1.1954 -0.0054 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5139 34 1 1.6539 2.1325 -0.0004 35 1 4.1137 2.1475 -0.0009 36 1 6.1517 -0.0836 -1.0240 37 1 6.1447 0.9762 0.4061 38 1 6.1583 -0.7921 0.6089 39 1 2.7055 -3.6393 0.2073 40 1 5.5610 -4.4040 1.8674 41 1 4.0514 -5.2836 2.2073 42 1 5.4530 -6.1484 1.5317 43 1 3.8441 -5.6508 -2.4428 44 1 2.3341 -6.5302 -2.1028 45 1 2.4428 -4.7857 -1.7673 46 1 4.7890 -7.3893 -1.1870 47 1 2.7684 -8.3555 0.7290 48 1 2.6061 -8.4477 -1.0411 49 1 2.5079 -10.9347 -0.0093 50 1 3.7793 -15.2639 0.0996 51 1 1.6552 -2.1307 -0.0100 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725119668.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:51 Heat of formation + Delta-G solvation = -74.289722 kcal Electronic energy + Delta-G solvation = -29887.683978 eV Core-core repulsion = 25785.615754 eV Total energy + Delta-G solvation = -4102.068224 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.53890 -40.38126 -39.70092 -38.35814 -36.11687 -35.58260 -34.52514 -33.74219 -32.93611 -31.29595 -30.52739 -29.94038 -28.05455 -26.07187 -25.66955 -25.09609 -24.04419 -22.41106 -21.66890 -21.25170 -21.07135 -20.25788 -18.49662 -17.65920 -17.48828 -16.86610 -16.53243 -16.47917 -16.29095 -16.23601 -15.80821 -15.50786 -15.17611 -15.07225 -14.78469 -14.71372 -14.43827 -14.33754 -14.24127 -13.98683 -13.87784 -13.73247 -13.51281 -13.37837 -13.09366 -13.02074 -12.77948 -12.72551 -12.54745 -12.51802 -12.43867 -12.40034 -12.21805 -11.99502 -11.97039 -11.66251 -11.49668 -10.65342 -10.43395 -10.23765 -10.21472 -9.89777 -9.42591 -9.28369 -8.39956 -6.01104 -0.11305 0.37815 1.31123 1.36974 1.46083 1.87579 1.98187 2.02333 2.24539 2.80200 2.84391 3.16649 3.45158 3.60800 3.73307 3.84924 3.88436 4.02394 4.07773 4.17417 4.22643 4.29603 4.44437 4.44680 4.49011 4.56992 4.60690 4.64889 4.73970 4.79832 4.80045 4.84719 4.87261 4.91183 4.95643 5.00512 5.08070 5.19259 5.23375 5.31266 5.35282 5.39218 5.52452 5.56627 5.59756 5.62740 5.92213 5.98133 6.06290 6.34081 6.54982 6.61175 6.89874 7.23595 7.41518 7.99000 8.77796 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020886 B = 0.001833 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.298469 B =15268.737815 C =16256.206110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.105 4.105 3 C -0.091 4.091 4 C -0.132 4.132 5 C -0.052 4.052 6 C -0.116 4.116 7 C -0.154 4.154 8 C 0.553 3.447 9 O -0.568 6.568 10 N -0.704 5.704 11 C 0.161 3.839 12 H 0.062 0.938 13 C -0.145 4.145 14 C 0.086 3.914 15 H 0.108 0.892 16 C -0.179 4.179 17 N -0.677 5.677 18 C 0.066 3.934 19 C 0.447 3.553 20 O -0.615 6.615 21 N -0.591 5.591 22 C -0.329 4.329 23 H 0.053 0.947 24 C -0.018 4.018 25 N -0.936 5.936 26 Si 0.967 3.033 27 H -0.257 1.257 28 H -0.277 1.277 29 H -0.228 1.228 30 C -0.084 4.084 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.152 0.848 35 H 0.146 0.854 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.412 0.588 40 H 0.036 0.964 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.045 0.955 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.345 0.655 47 H 0.118 0.882 48 H 0.081 0.919 49 H 0.390 0.610 50 H 0.279 0.721 51 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.684 34.633 0.187 38.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.105 4.105 3 C -0.109 4.109 4 C -0.149 4.149 5 C -0.053 4.053 6 C -0.173 4.173 7 C -0.157 4.157 8 C 0.343 3.657 9 O -0.449 6.449 10 N -0.356 5.356 11 C 0.056 3.944 12 H 0.080 0.920 13 C -0.204 4.204 14 C -0.024 4.024 15 H 0.126 0.874 16 C -0.238 4.238 17 N -0.309 5.309 18 C -0.066 4.066 19 C 0.235 3.765 20 O -0.500 6.500 21 N -0.233 5.233 22 C -0.458 4.458 23 H 0.071 0.929 24 C -0.216 4.216 25 N -0.577 5.577 26 Si 0.787 3.213 27 H -0.181 1.181 28 H -0.202 1.202 29 H -0.151 1.151 30 C -0.102 4.102 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.169 0.831 35 H 0.164 0.836 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.250 0.750 40 H 0.055 0.945 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.064 0.936 44 H 0.086 0.914 45 H 0.098 0.902 46 H 0.164 0.836 47 H 0.136 0.864 48 H 0.099 0.901 49 H 0.226 0.774 50 H 0.088 0.912 51 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -14.858 34.421 0.719 37.498 hybrid contribution -0.708 -0.983 -0.802 1.453 sum -15.566 33.438 -0.084 36.884 Atomic orbital electron populations 1.20852 0.88726 1.04075 1.03309 1.20199 0.97801 0.92504 0.99991 1.21608 0.93891 0.98936 0.96450 1.21292 0.94804 0.97523 1.01324 1.20210 0.96750 0.92463 0.95830 1.20968 0.90835 1.02861 1.02608 1.19792 0.94496 0.92332 1.09090 1.18611 0.86889 0.84525 0.75711 1.90733 1.15476 1.87556 1.51140 1.45774 1.11322 1.04728 1.73802 1.20656 0.94394 0.81977 0.97377 0.91972 1.21939 1.01297 1.01149 0.95989 1.21751 0.95437 0.87775 0.97451 0.87421 1.22486 1.01713 1.03242 0.96373 1.59932 1.23762 1.00255 1.46957 1.21653 0.93706 0.86820 1.04453 1.21060 0.88536 0.85803 0.81074 1.90562 1.16981 1.87624 1.54813 1.42011 1.08845 1.05173 1.67224 1.18997 0.92912 0.84173 1.49710 0.92903 1.26163 1.05655 0.93630 0.96171 1.69816 1.39019 0.98649 1.50181 0.85338 0.76140 0.80055 0.79805 1.18112 1.20219 1.15122 1.21400 0.91722 0.99553 0.97534 0.90266 0.90478 0.90300 0.83067 0.83646 0.91811 0.90717 0.91128 0.75035 0.94516 0.91484 0.91800 0.93561 0.91389 0.90195 0.83604 0.86389 0.90081 0.77397 0.91202 0.83526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.52 10.01 71.24 0.71 0.20 16 2 C -0.10 -1.05 5.87 -19.90 -0.12 -1.17 16 3 C -0.09 -0.91 9.69 22.33 0.22 -0.69 16 4 C -0.13 -1.72 9.66 22.23 0.21 -1.51 16 5 C -0.05 -0.95 5.91 -19.61 -0.12 -1.07 16 6 C -0.12 -2.34 8.74 71.24 0.62 -1.71 16 7 C -0.15 -2.85 5.87 -20.09 -0.12 -2.97 16 8 C 0.55 12.61 7.67 86.79 0.67 13.27 16 9 O -0.57 -17.43 13.00 -3.87 -0.05 -17.48 16 10 N -0.70 -12.19 4.33 -445.40 -1.93 -14.12 16 11 C 0.16 3.53 2.34 44.99 0.11 3.63 16 12 H 0.06 1.75 7.58 -2.38 -0.02 1.73 16 13 C -0.15 -3.58 9.33 71.98 0.67 -2.91 16 14 C 0.09 1.60 2.22 44.92 0.10 1.70 16 15 H 0.11 1.50 7.80 -2.39 -0.02 1.48 16 16 C -0.18 -2.82 9.00 71.98 0.65 -2.17 16 17 N -0.68 -18.56 5.11 -495.56 -2.53 -21.09 16 18 C 0.07 1.83 5.97 85.56 0.51 2.35 16 19 C 0.45 19.67 7.82 87.66 0.69 20.36 16 20 O -0.62 -34.01 15.78 -3.07 -0.05 -34.06 16 21 N -0.59 -27.27 5.09 -306.99 -1.56 -28.83 16 22 C -0.33 -19.21 10.16 84.04 0.85 -18.35 16 23 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 24 C -0.02 -0.99 5.50 84.92 0.47 -0.52 16 25 N -0.94 -56.55 13.96 21.66 0.30 -56.25 16 26 Si 0.97 38.12 27.74 68.60 1.90 40.02 16 27 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 28 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 29 H -0.23 -7.41 6.52 99.48 0.65 -6.76 16 30 C -0.08 -1.03 9.17 22.53 0.21 -0.82 16 31 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.08 0.24 8.08 -2.39 -0.02 0.22 16 33 H 0.08 0.21 8.08 -2.39 -0.02 0.19 16 34 H 0.15 0.68 8.06 -2.91 -0.02 0.66 16 35 H 0.15 1.28 8.06 -2.90 -0.02 1.26 16 36 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.07 1.13 8.04 -2.39 -0.02 1.11 16 38 H 0.07 1.79 5.85 -2.39 -0.01 1.78 16 39 H 0.41 4.28 6.46 -92.71 -0.60 3.68 16 40 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.06 1.88 7.61 -2.39 -0.02 1.86 16 43 H 0.05 0.88 8.13 -2.39 -0.02 0.86 16 44 H 0.07 0.99 7.45 -2.39 -0.02 0.97 16 45 H 0.08 0.93 7.45 -2.39 -0.02 0.92 16 46 H 0.34 10.67 8.17 -89.70 -0.73 9.94 16 47 H 0.12 2.66 8.06 -2.39 -0.02 2.65 16 48 H 0.08 1.76 7.44 -2.38 -0.02 1.74 16 49 H 0.39 14.64 5.76 -92.71 -0.53 14.11 16 50 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 51 H 0.15 0.99 6.46 -2.91 -0.02 0.97 16 Total: -1.00 -83.10 413.47 1.45 -81.64 By element: Atomic # 1 Polarization: 43.49 SS G_CDS: -0.96 Total: 42.54 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 6.33 Total: 7.62 kcal Atomic # 7 Polarization: -114.57 SS G_CDS: -5.72 Total: -120.29 kcal Atomic # 8 Polarization: -51.43 SS G_CDS: -0.10 Total: -51.53 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 1.90 Total: 40.02 kcal Total: -83.10 1.45 -81.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725119668.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.355 kcal (2) G-P(sol) polarization free energy of solvation -83.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds