Wall clock time and date at job start Wed Apr 1 2020 05:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38356 * 119.93080 * 2 1 4 4 C 1.38360 * 120.29684 * 179.76416 * 3 2 1 5 5 C 1.50693 * 119.93044 * 180.25665 * 4 3 2 6 6 C 1.37955 * 120.14134 * 0.46801 * 4 3 2 7 7 C 1.39575 * 119.85263 * 359.51160 * 6 4 3 8 8 C 1.47847 * 120.14487 * 180.23372 * 7 6 4 9 9 O 1.21550 * 119.99849 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00150 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00008 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.47211 * 35.00048 * 11 10 8 13 13 C 1.52998 * 109.47030 * 274.99953 * 11 10 8 14 14 C 1.53001 * 109.47045 * 154.99787 * 11 10 8 15 15 H 1.08993 * 109.47033 * 294.99686 * 14 11 10 16 16 C 1.52997 * 109.47123 * 55.00107 * 14 11 10 17 17 N 1.46903 * 109.47117 * 174.99712 * 14 11 10 18 18 C 1.46894 * 111.00226 * 155.00078 * 17 14 11 19 19 C 1.50697 * 109.47302 * 179.97438 * 18 17 14 20 20 O 1.21291 * 120.00222 * 0.02562 * 19 18 17 21 21 N 1.34781 * 120.00136 * 179.97438 * 19 18 17 22 22 C 1.37094 * 120.00070 * 180.02562 * 21 19 18 23 23 H 1.08006 * 120.00028 * 0.02562 * 22 21 19 24 24 C 1.38944 * 119.99920 * 180.02562 * 22 21 19 25 25 N 1.31417 * 120.00338 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 120.00163 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.46758 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.47094 * 120.00107 * 26 24 22 29 29 H 1.48495 * 109.47098 * 240.00421 * 26 24 22 30 30 C 1.37958 * 119.92512 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.47345 * 270.02433 * 1 2 3 32 32 H 1.08999 * 109.46542 * 30.02953 * 1 2 3 33 33 H 1.08995 * 109.46837 * 150.02063 * 1 2 3 34 34 H 1.08003 * 119.84780 * 359.97438 * 3 2 1 35 35 H 1.09000 * 109.46983 * 270.20891 * 5 4 3 36 36 H 1.09000 * 109.47285 * 30.20605 * 5 4 3 37 37 H 1.08993 * 109.47149 * 150.21100 * 5 4 3 38 38 H 1.08002 * 120.07573 * 179.79379 * 6 4 3 39 39 H 0.96996 * 119.99633 * 359.97438 * 10 8 7 40 40 H 1.08992 * 109.47185 * 180.02562 * 13 11 10 41 41 H 1.09007 * 109.46913 * 300.00066 * 13 11 10 42 42 H 1.09002 * 109.47411 * 59.99503 * 13 11 10 43 43 H 1.09003 * 109.47607 * 59.99756 * 16 14 11 44 44 H 1.09004 * 109.47381 * 179.97438 * 16 14 11 45 45 H 1.09004 * 109.47342 * 299.99772 * 16 14 11 46 46 H 1.00899 * 110.99603 * 31.04608 * 17 14 11 47 47 H 1.09005 * 109.47280 * 300.00230 * 18 17 14 48 48 H 1.09005 * 109.46861 * 59.99888 * 18 17 14 49 49 H 0.96999 * 119.99712 * 0.02562 * 21 19 18 50 50 H 0.96991 * 119.99903 * 179.97438 * 25 24 22 51 51 H 1.07997 * 120.07488 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1990 0.0000 4 6 3.5810 1.2079 0.0049 5 6 4.3245 2.5186 0.0107 6 6 4.2813 0.0193 0.0001 7 6 3.5911 -1.1938 0.0006 8 6 4.3352 -2.4714 0.0007 9 8 5.5506 -2.4668 -0.0001 10 7 3.6657 -3.6412 0.0006 11 6 4.4030 -4.9071 0.0013 12 1 5.3130 -4.7973 0.5911 13 6 4.7690 -5.2848 -1.4355 14 6 3.5297 -6.0056 0.6108 15 1 3.3427 -5.7804 1.6606 16 6 2.1990 -6.0751 -0.1410 17 7 4.2211 -7.2973 0.5027 18 6 3.7574 -8.2309 1.5376 19 6 4.4868 -9.5418 1.3949 20 8 5.3122 -9.6842 0.5176 21 7 4.2228 -10.5557 2.2428 22 6 4.8868 -11.7481 2.1133 23 1 5.6217 -11.8749 1.3321 24 6 4.6142 -12.7935 2.9870 25 7 3.7196 -12.6395 3.9373 26 14 5.5194 -14.4181 2.8111 27 1 6.4685 -14.3350 1.6720 28 1 6.2697 -14.7045 4.0602 29 1 4.5400 -15.5060 2.5614 30 6 2.1953 -1.1957 0.0005 31 1 -0.3634 0.0004 1.0276 32 1 -0.3632 0.8897 -0.5143 33 1 -0.3633 -0.8901 -0.5135 34 1 1.6538 2.1323 -0.0004 35 1 4.5041 2.8390 -1.0155 36 1 3.7294 3.2716 0.5275 37 1 5.2776 2.3934 0.5243 38 1 5.3613 0.0275 0.0006 39 1 2.6958 -3.6448 0.0009 40 1 5.3172 -6.2269 -1.4351 41 1 3.8590 -5.3947 -2.0253 42 1 5.3911 -4.5022 -1.8697 43 1 2.3861 -6.3003 -1.1910 44 1 1.5770 -6.8580 0.2929 45 1 1.6859 -5.1167 -0.0608 46 1 5.2219 -7.1764 0.5468 47 1 3.9565 -7.8092 2.5229 48 1 2.6862 -8.3972 1.4233 49 1 3.5630 -10.4417 2.9446 50 1 3.5291 -13.3694 4.5469 51 1 1.6553 -2.1309 0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725124155.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:13 Heat of formation + Delta-G solvation = -58.954274 kcal Electronic energy + Delta-G solvation = -29517.867238 eV Core-core repulsion = 25416.464009 eV Total energy + Delta-G solvation = -4101.403229 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.69845 -39.28820 -38.37738 -37.26746 -34.60476 -34.00062 -33.74125 -32.71521 -31.26385 -30.68787 -29.14993 -27.81740 -27.04935 -26.58000 -25.01446 -24.27847 -23.05134 -21.13536 -20.49142 -19.79763 -19.31416 -18.00536 -17.76430 -16.70373 -16.49597 -15.92548 -15.67289 -15.45051 -15.18292 -15.07082 -14.58499 -14.43279 -14.29236 -13.97224 -13.80558 -13.69023 -13.64764 -13.43736 -13.14636 -12.97708 -12.82759 -12.54371 -12.40172 -12.22362 -12.07147 -11.94016 -11.91840 -11.81096 -11.59349 -11.48307 -11.43408 -11.10940 -10.92055 -10.69666 -10.33913 -10.22350 -10.12285 -9.51820 -9.36904 -9.13749 -9.03390 -8.46765 -8.12047 -7.95994 -6.41681 -3.82408 0.48991 0.90962 2.57527 2.86182 3.16763 3.27403 3.34886 3.47546 3.90787 4.09086 4.25280 4.29071 4.30171 4.33894 4.58976 4.69136 4.80715 4.85180 4.88373 4.99577 5.09427 5.14187 5.14959 5.15781 5.20049 5.25342 5.33103 5.41150 5.41870 5.55849 5.57408 5.60147 5.69627 5.74471 5.78926 5.89699 5.92723 5.94341 5.97213 6.04245 6.11805 6.15883 6.27527 6.36662 6.43762 6.49274 7.14767 7.28655 7.55744 7.59774 7.99466 8.06651 8.61250 9.18205 9.54372 10.05676 10.76133 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024381 B = 0.001637 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.177304 B =17100.919094 C =17595.718497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.089 4.089 3 C -0.098 4.098 4 C -0.090 4.090 5 C -0.115 4.115 6 C -0.067 4.067 7 C -0.124 4.124 8 C 0.558 3.442 9 O -0.534 6.534 10 N -0.718 5.718 11 C 0.141 3.859 12 H 0.088 0.912 13 C -0.157 4.157 14 C 0.076 3.924 15 H 0.048 0.952 16 C -0.144 4.144 17 N -0.656 5.656 18 C 0.050 3.950 19 C 0.441 3.559 20 O -0.582 6.582 21 N -0.564 5.564 22 C -0.298 4.298 23 H 0.104 0.896 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.282 1.282 30 C -0.094 4.094 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.126 0.874 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.136 0.864 39 H 0.398 0.602 40 H 0.082 0.918 41 H 0.060 0.940 42 H 0.053 0.947 43 H 0.070 0.930 44 H 0.062 0.938 45 H 0.047 0.953 46 H 0.352 0.648 47 H 0.044 0.956 48 H 0.086 0.914 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.752 29.605 -5.933 31.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.089 4.089 3 C -0.116 4.116 4 C -0.090 4.090 5 C -0.172 4.172 6 C -0.086 4.086 7 C -0.127 4.127 8 C 0.345 3.655 9 O -0.412 6.412 10 N -0.371 5.371 11 C 0.037 3.963 12 H 0.106 0.894 13 C -0.215 4.215 14 C -0.035 4.035 15 H 0.066 0.934 16 C -0.202 4.202 17 N -0.290 5.290 18 C -0.082 4.082 19 C 0.227 3.773 20 O -0.466 6.466 21 N -0.201 5.201 22 C -0.428 4.428 23 H 0.122 0.878 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.757 3.243 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.208 1.208 30 C -0.112 4.112 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.144 0.856 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.154 0.846 39 H 0.236 0.764 40 H 0.101 0.899 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.081 0.919 45 H 0.066 0.934 46 H 0.172 0.828 47 H 0.062 0.938 48 H 0.105 0.895 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.793 29.089 -6.857 30.886 hybrid contribution -0.205 -0.507 1.320 1.428 sum -7.998 28.582 -5.537 30.192 Atomic orbital electron populations 1.20817 0.90582 1.03135 1.02685 1.19843 0.96395 0.92737 0.99961 1.21129 0.93542 0.97751 0.99219 1.19900 0.93771 0.95406 0.99951 1.20808 1.00187 0.93515 1.02650 1.21158 1.00721 0.90346 0.96347 1.19941 0.93569 0.93630 1.05529 1.18276 0.87298 0.83680 0.76266 1.90784 1.13382 1.87534 1.49496 1.46090 1.10418 1.05445 1.75176 1.21111 0.95031 0.81694 0.98481 0.89383 1.22125 1.02062 1.02445 0.94909 1.21719 0.94826 0.88942 0.97983 0.93442 1.21887 0.95762 1.00462 1.02086 1.60191 1.11007 1.08063 1.49732 1.21737 1.00541 0.93108 0.92834 1.19780 0.86947 0.85527 0.85082 1.90529 1.37224 1.82835 1.35993 1.41865 1.37605 1.11597 1.29012 1.19762 1.19598 0.88539 1.14911 0.87836 1.25262 0.97139 0.99911 0.95659 1.69620 1.33000 1.33743 1.17988 0.85798 0.79124 0.81122 0.78295 1.19202 1.20789 1.20753 1.21166 0.92833 0.98053 0.99197 0.90861 0.91323 0.91214 0.85637 0.90896 0.91339 0.91156 0.84649 0.76437 0.89890 0.92144 0.92796 0.91071 0.91942 0.93438 0.82777 0.93802 0.89534 0.77489 0.91945 0.85732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.51 10.01 36.01 0.36 -0.15 16 2 C -0.09 -0.61 5.87 -104.68 -0.61 -1.22 16 3 C -0.10 -0.66 9.35 -39.49 -0.37 -1.03 16 4 C -0.09 -0.68 5.87 -104.68 -0.61 -1.30 16 5 C -0.11 -0.60 10.01 36.00 0.36 -0.24 16 6 C -0.07 -0.64 9.24 -39.19 -0.36 -1.01 16 7 C -0.12 -1.24 5.87 -104.97 -0.62 -1.86 16 8 C 0.56 6.76 7.74 -12.33 -0.10 6.67 16 9 O -0.53 -8.39 16.01 5.32 0.09 -8.31 16 10 N -0.72 -7.30 4.94 -54.75 -0.27 -7.57 16 11 C 0.14 1.66 2.30 -67.93 -0.16 1.51 16 12 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 13 C -0.16 -1.92 9.02 37.16 0.34 -1.59 16 14 C 0.08 0.90 2.66 -67.71 -0.18 0.72 16 15 H 0.05 0.55 7.80 -51.93 -0.41 0.15 16 16 C -0.14 -1.47 8.93 37.16 0.33 -1.14 16 17 N -0.66 -10.17 5.14 -108.00 -0.55 -10.73 16 18 C 0.05 0.87 5.96 -4.98 -0.03 0.84 16 19 C 0.44 10.34 7.82 -10.98 -0.09 10.26 16 20 O -0.58 -15.72 15.78 5.55 0.09 -15.63 16 21 N -0.56 -14.27 5.29 -10.96 -0.06 -14.32 16 22 C -0.30 -8.35 9.68 -14.94 -0.14 -8.49 16 23 H 0.10 3.04 7.16 -52.48 -0.38 2.67 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.55 13.05 55.50 0.72 -23.82 16 26 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 30 C -0.09 -0.73 9.19 -39.18 -0.36 -1.09 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.24 8.08 -51.93 -0.42 -0.18 16 33 H 0.07 0.27 8.08 -51.93 -0.42 -0.15 16 34 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.27 8.09 -51.93 -0.42 -0.15 16 37 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 38 H 0.14 1.35 7.65 -52.49 -0.40 0.95 16 39 H 0.40 3.07 4.61 -40.82 -0.19 2.89 16 40 H 0.08 1.12 7.17 -51.93 -0.37 0.75 16 41 H 0.06 0.68 6.57 -51.92 -0.34 0.34 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.78 6.57 -51.93 -0.34 0.44 16 44 H 0.06 0.67 7.45 -51.93 -0.39 0.29 16 45 H 0.05 0.35 6.29 -51.93 -0.33 0.02 16 46 H 0.35 5.78 7.62 -39.29 -0.30 5.48 16 47 H 0.04 0.69 8.06 -51.93 -0.42 0.27 16 48 H 0.09 1.37 7.44 -51.93 -0.39 0.98 16 49 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 50 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 51 H 0.12 0.71 6.41 -52.49 -0.34 0.38 16 LS Contribution 415.48 15.07 6.26 6.26 Total: -1.00 -33.45 415.48 -8.89 -42.34 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -7.80 Total: 14.32 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -2.34 Total: 1.37 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: -0.16 Total: -56.45 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: 0.17 Total: -23.93 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -33.45 -8.89 -42.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725124155.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.619 kcal (2) G-P(sol) polarization free energy of solvation -33.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds