Wall clock time and date at job start Wed Apr 1 2020 05:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38356 * 119.93080 * 2 1 4 4 C 1.38360 * 120.29684 * 179.76416 * 3 2 1 5 5 C 1.50693 * 119.93044 * 180.25665 * 4 3 2 6 6 C 1.37955 * 120.14134 * 0.46801 * 4 3 2 7 7 C 1.39575 * 119.85263 * 359.51160 * 6 4 3 8 8 C 1.47847 * 120.14487 * 180.23372 * 7 6 4 9 9 O 1.21550 * 119.99849 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00150 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00008 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.47211 * 35.00048 * 11 10 8 13 13 C 1.52998 * 109.47030 * 274.99953 * 11 10 8 14 14 C 1.53001 * 109.47045 * 154.99787 * 11 10 8 15 15 H 1.08993 * 109.47033 * 294.99686 * 14 11 10 16 16 C 1.52997 * 109.47123 * 55.00107 * 14 11 10 17 17 N 1.46903 * 109.47117 * 174.99712 * 14 11 10 18 18 C 1.46894 * 111.00226 * 155.00078 * 17 14 11 19 19 C 1.50697 * 109.47302 * 179.97438 * 18 17 14 20 20 O 1.21291 * 120.00222 * 0.02562 * 19 18 17 21 21 N 1.34781 * 120.00136 * 179.97438 * 19 18 17 22 22 C 1.37094 * 120.00070 * 180.02562 * 21 19 18 23 23 H 1.08006 * 120.00028 * 0.02562 * 22 21 19 24 24 C 1.38944 * 119.99920 * 180.02562 * 22 21 19 25 25 N 1.31417 * 120.00338 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 120.00163 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.46758 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.47094 * 120.00107 * 26 24 22 29 29 H 1.48495 * 109.47098 * 240.00421 * 26 24 22 30 30 C 1.37958 * 119.92512 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.47345 * 270.02433 * 1 2 3 32 32 H 1.08999 * 109.46542 * 30.02953 * 1 2 3 33 33 H 1.08995 * 109.46837 * 150.02063 * 1 2 3 34 34 H 1.08003 * 119.84780 * 359.97438 * 3 2 1 35 35 H 1.09000 * 109.46983 * 270.20891 * 5 4 3 36 36 H 1.09000 * 109.47285 * 30.20605 * 5 4 3 37 37 H 1.08993 * 109.47149 * 150.21100 * 5 4 3 38 38 H 1.08002 * 120.07573 * 179.79379 * 6 4 3 39 39 H 0.96996 * 119.99633 * 359.97438 * 10 8 7 40 40 H 1.08992 * 109.47185 * 180.02562 * 13 11 10 41 41 H 1.09007 * 109.46913 * 300.00066 * 13 11 10 42 42 H 1.09002 * 109.47411 * 59.99503 * 13 11 10 43 43 H 1.09003 * 109.47607 * 59.99756 * 16 14 11 44 44 H 1.09004 * 109.47381 * 179.97438 * 16 14 11 45 45 H 1.09004 * 109.47342 * 299.99772 * 16 14 11 46 46 H 1.00899 * 110.99603 * 31.04608 * 17 14 11 47 47 H 1.09005 * 109.47280 * 300.00230 * 18 17 14 48 48 H 1.09005 * 109.46861 * 59.99888 * 18 17 14 49 49 H 0.96999 * 119.99712 * 0.02562 * 21 19 18 50 50 H 0.96991 * 119.99903 * 179.97438 * 25 24 22 51 51 H 1.07997 * 120.07488 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1990 0.0000 4 6 3.5810 1.2079 0.0049 5 6 4.3245 2.5186 0.0107 6 6 4.2813 0.0193 0.0001 7 6 3.5911 -1.1938 0.0006 8 6 4.3352 -2.4714 0.0007 9 8 5.5506 -2.4668 -0.0001 10 7 3.6657 -3.6412 0.0006 11 6 4.4030 -4.9071 0.0013 12 1 5.3130 -4.7973 0.5911 13 6 4.7690 -5.2848 -1.4355 14 6 3.5297 -6.0056 0.6108 15 1 3.3427 -5.7804 1.6606 16 6 2.1990 -6.0751 -0.1410 17 7 4.2211 -7.2973 0.5027 18 6 3.7574 -8.2309 1.5376 19 6 4.4868 -9.5418 1.3949 20 8 5.3122 -9.6842 0.5176 21 7 4.2228 -10.5557 2.2428 22 6 4.8868 -11.7481 2.1133 23 1 5.6217 -11.8749 1.3321 24 6 4.6142 -12.7935 2.9870 25 7 3.7196 -12.6395 3.9373 26 14 5.5194 -14.4181 2.8111 27 1 6.4685 -14.3350 1.6720 28 1 6.2697 -14.7045 4.0602 29 1 4.5400 -15.5060 2.5614 30 6 2.1953 -1.1957 0.0005 31 1 -0.3634 0.0004 1.0276 32 1 -0.3632 0.8897 -0.5143 33 1 -0.3633 -0.8901 -0.5135 34 1 1.6538 2.1323 -0.0004 35 1 4.5041 2.8390 -1.0155 36 1 3.7294 3.2716 0.5275 37 1 5.2776 2.3934 0.5243 38 1 5.3613 0.0275 0.0006 39 1 2.6958 -3.6448 0.0009 40 1 5.3172 -6.2269 -1.4351 41 1 3.8590 -5.3947 -2.0253 42 1 5.3911 -4.5022 -1.8697 43 1 2.3861 -6.3003 -1.1910 44 1 1.5770 -6.8580 0.2929 45 1 1.6859 -5.1167 -0.0608 46 1 5.2219 -7.1764 0.5468 47 1 3.9565 -7.8092 2.5229 48 1 2.6862 -8.3972 1.4233 49 1 3.5630 -10.4417 2.9446 50 1 3.5291 -13.3694 4.5469 51 1 1.6553 -2.1309 0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725124155.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:12 Heat of formation + Delta-G solvation = -81.771839 kcal Electronic energy + Delta-G solvation = -29518.856682 eV Core-core repulsion = 25416.464009 eV Total energy + Delta-G solvation = -4102.392673 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.52454 -40.30505 -39.83703 -38.47438 -36.08005 -35.46161 -34.46074 -33.48748 -33.23189 -31.74350 -30.10575 -28.25134 -28.13742 -27.55655 -26.20373 -25.64724 -24.07472 -21.67501 -21.35873 -21.12648 -20.76000 -19.93175 -18.73229 -17.75465 -17.50580 -17.10946 -16.79559 -16.56784 -16.26076 -16.21202 -15.96634 -15.63878 -15.51506 -15.17225 -14.82123 -14.57111 -14.35309 -14.26518 -13.98281 -13.94456 -13.70656 -13.53994 -13.43258 -13.32470 -13.11350 -13.09611 -12.85416 -12.78618 -12.55931 -12.52190 -12.46761 -12.40141 -12.11846 -12.00803 -11.95189 -11.69872 -11.51325 -11.08684 -10.37277 -10.26480 -10.01261 -9.78121 -9.59100 -9.39350 -8.46973 -5.95478 -0.17565 0.33764 1.36462 1.41893 1.55980 1.77974 1.94995 2.05496 2.29804 2.79984 2.94580 3.20400 3.45998 3.56400 3.64525 3.78683 3.83304 3.91408 4.12503 4.16032 4.30099 4.31938 4.36427 4.43047 4.45638 4.54356 4.57925 4.63319 4.65661 4.77551 4.79885 4.81182 4.84985 4.90242 4.95558 4.98832 5.02146 5.17394 5.24680 5.26424 5.35210 5.40698 5.41442 5.48492 5.51751 5.57243 5.87317 5.94643 6.08319 6.31131 6.43854 6.60124 7.10984 7.12860 7.56324 8.11811 8.70608 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024381 B = 0.001637 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.177304 B =17100.919094 C =17595.718497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.090 4.090 3 C -0.097 4.097 4 C -0.094 4.094 5 C -0.115 4.115 6 C -0.090 4.090 7 C -0.143 4.143 8 C 0.555 3.445 9 O -0.581 6.581 10 N -0.702 5.702 11 C 0.148 3.852 12 H 0.066 0.934 13 C -0.150 4.150 14 C 0.082 3.918 15 H 0.059 0.941 16 C -0.143 4.143 17 N -0.667 5.667 18 C 0.066 3.934 19 C 0.438 3.562 20 O -0.622 6.622 21 N -0.573 5.573 22 C -0.334 4.334 23 H 0.078 0.922 24 C -0.012 4.012 25 N -0.920 5.920 26 Si 0.992 3.008 27 H -0.274 1.274 28 H -0.271 1.271 29 H -0.270 1.270 30 C -0.094 4.094 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.152 0.848 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.065 0.935 38 H 0.118 0.882 39 H 0.413 0.587 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.041 0.959 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.080 0.920 46 H 0.343 0.657 47 H 0.065 0.935 48 H 0.109 0.891 49 H 0.397 0.603 50 H 0.277 0.723 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.581 30.973 -5.568 33.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.090 4.090 3 C -0.115 4.115 4 C -0.095 4.095 5 C -0.171 4.171 6 C -0.109 4.109 7 C -0.146 4.146 8 C 0.344 3.656 9 O -0.462 6.462 10 N -0.356 5.356 11 C 0.043 3.957 12 H 0.085 0.915 13 C -0.208 4.208 14 C -0.028 4.028 15 H 0.077 0.923 16 C -0.201 4.201 17 N -0.301 5.301 18 C -0.066 4.066 19 C 0.225 3.775 20 O -0.509 6.509 21 N -0.211 5.211 22 C -0.463 4.463 23 H 0.096 0.904 24 C -0.212 4.212 25 N -0.561 5.561 26 Si 0.816 3.184 27 H -0.199 1.199 28 H -0.197 1.197 29 H -0.195 1.195 30 C -0.113 4.113 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.170 0.830 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.136 0.864 39 H 0.253 0.747 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.060 0.940 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.099 0.901 46 H 0.162 0.838 47 H 0.083 0.917 48 H 0.127 0.873 49 H 0.231 0.769 50 H 0.087 0.913 51 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.688 30.473 -6.476 32.936 hybrid contribution 0.646 -0.827 1.182 1.580 sum -10.042 29.646 -5.294 31.745 Atomic orbital electron populations 1.20880 0.88489 1.04222 1.03506 1.20207 0.97880 0.92295 0.98655 1.21505 0.93179 0.99023 0.97771 1.20153 0.94534 0.95438 0.99324 1.20858 1.00106 0.92820 1.03329 1.21197 1.00230 0.91440 0.97992 1.19858 0.94617 0.92411 1.07762 1.18701 0.86903 0.84738 0.75264 1.90756 1.15454 1.88179 1.51798 1.45889 1.10985 1.04370 1.74363 1.20892 0.94599 0.82458 0.97739 0.91549 1.22031 1.02205 1.01110 0.95447 1.21758 0.95131 0.86928 0.98973 0.92299 1.21907 0.94618 1.02359 1.01184 1.60230 1.10766 1.09779 1.49298 1.21593 1.00614 0.90032 0.94409 1.20868 0.86135 0.86965 0.83488 1.90500 1.39003 1.83933 1.37439 1.41924 1.37847 1.11568 1.29712 1.19703 1.20636 0.90506 1.15481 0.90386 1.26020 0.97627 1.02620 0.94944 1.69673 1.33383 1.34874 1.18142 0.84878 0.78043 0.77224 0.78229 1.19907 1.19657 1.19528 1.21394 0.91735 0.99608 0.98561 0.90031 0.90100 0.90381 0.83023 0.90162 0.89557 0.91568 0.86383 0.74698 0.91518 0.90819 0.93969 0.91806 0.92028 0.90118 0.83772 0.91706 0.87315 0.76947 0.91312 0.83650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 10.01 71.24 0.71 0.12 16 2 C -0.09 -0.98 5.87 -19.90 -0.12 -1.10 16 3 C -0.10 -1.06 9.35 22.33 0.21 -0.85 16 4 C -0.09 -1.34 5.87 -19.90 -0.12 -1.46 16 5 C -0.11 -1.07 10.01 71.23 0.71 -0.35 16 6 C -0.09 -1.78 9.24 22.53 0.21 -1.57 16 7 C -0.14 -2.85 5.87 -20.09 -0.12 -2.97 16 8 C 0.56 13.73 7.74 86.79 0.67 14.40 16 9 O -0.58 -19.39 16.01 -3.87 -0.06 -19.45 16 10 N -0.70 -13.66 4.94 -445.41 -2.20 -15.86 16 11 C 0.15 3.47 2.30 44.99 0.10 3.57 16 12 H 0.07 1.88 7.58 -2.39 -0.02 1.86 16 13 C -0.15 -3.72 9.02 71.98 0.65 -3.07 16 14 C 0.08 1.82 2.66 44.91 0.12 1.94 16 15 H 0.06 1.22 7.80 -2.39 -0.02 1.20 16 16 C -0.14 -2.52 8.93 71.98 0.64 -1.87 16 17 N -0.67 -20.37 5.14 -495.59 -2.54 -22.92 16 18 C 0.07 2.20 5.96 85.56 0.51 2.71 16 19 C 0.44 20.77 7.82 87.66 0.69 21.46 16 20 O -0.62 -34.64 15.78 -3.06 -0.05 -34.68 16 21 N -0.57 -29.40 5.29 -306.99 -1.62 -31.02 16 22 C -0.33 -19.07 9.68 84.04 0.81 -18.26 16 23 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 24 C -0.01 -0.66 5.50 84.92 0.47 -0.20 16 25 N -0.92 -49.58 13.05 21.66 0.28 -49.30 16 26 Si 0.99 43.21 29.55 68.60 2.03 45.23 16 27 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 28 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 29 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 30 C -0.09 -1.28 9.19 22.53 0.21 -1.07 16 31 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.08 0.25 8.08 -2.39 -0.02 0.23 16 33 H 0.08 0.30 8.08 -2.39 -0.02 0.28 16 34 H 0.15 0.82 8.06 -2.91 -0.02 0.80 16 35 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.09 0.49 8.09 -2.39 -0.02 0.47 16 37 H 0.07 0.66 8.08 -2.39 -0.02 0.64 16 38 H 0.12 2.63 7.65 -2.91 -0.02 2.61 16 39 H 0.41 5.36 4.61 -92.71 -0.43 4.93 16 40 H 0.07 1.88 7.17 -2.39 -0.02 1.86 16 41 H 0.07 1.61 6.57 -2.38 -0.02 1.59 16 42 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.06 1.25 6.57 -2.39 -0.02 1.23 16 44 H 0.06 1.13 7.45 -2.38 -0.02 1.12 16 45 H 0.08 0.87 6.29 -2.39 -0.02 0.86 16 46 H 0.34 11.53 7.62 -89.69 -0.68 10.85 16 47 H 0.07 1.92 8.06 -2.38 -0.02 1.90 16 48 H 0.11 3.19 7.44 -2.38 -0.02 3.17 16 49 H 0.40 19.22 7.90 -92.71 -0.73 18.49 16 50 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 51 H 0.15 1.20 6.41 -2.91 -0.02 1.18 16 Total: -1.00 -75.18 415.48 1.32 -73.86 By element: Atomic # 1 Polarization: 43.58 SS G_CDS: -0.87 Total: 42.72 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 6.36 Total: 11.43 kcal Atomic # 7 Polarization: -113.02 SS G_CDS: -6.09 Total: -119.10 kcal Atomic # 8 Polarization: -54.03 SS G_CDS: -0.11 Total: -54.14 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -75.18 1.32 -73.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725124155.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.913 kcal (2) G-P(sol) polarization free energy of solvation -75.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds