Wall clock time and date at job start Wed Apr 1 2020 05:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21292 * 119.99955 * 2 1 4 4 N 1.34778 * 120.00324 * 180.02562 * 2 1 3 5 5 C 1.39959 * 119.99893 * 185.13687 * 4 2 1 6 6 C 1.38990 * 119.99883 * 33.48924 * 5 4 2 7 7 C 1.38207 * 120.22700 * 179.97438 * 6 5 4 8 8 C 1.38030 * 120.21930 * 359.97438 * 7 6 5 9 9 C 1.39576 * 119.99376 * 0.02562 * 8 7 6 10 10 C 1.47859 * 120.10785 * 180.02562 * 9 8 7 11 11 O 1.21557 * 119.99816 * 173.61671 * 10 9 8 12 12 N 1.34772 * 120.00589 * 353.61388 * 10 9 8 13 13 C 1.46498 * 120.00651 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.46838 * 34.99650 * 13 12 10 15 15 C 1.53003 * 109.47078 * 274.99804 * 13 12 10 16 16 C 1.53003 * 109.47242 * 155.00089 * 13 12 10 17 17 C 1.53006 * 109.46905 * 294.99775 * 16 13 12 18 18 C 1.52993 * 109.47126 * 180.02562 * 17 16 13 19 19 N 1.46497 * 109.47451 * 179.97438 * 18 17 16 20 20 C 1.36931 * 120.00234 * 179.97438 * 19 18 17 21 21 H 1.07997 * 120.00242 * 359.97438 * 20 19 18 22 22 C 1.38813 * 120.00036 * 180.02562 * 20 19 18 23 23 N 1.31617 * 119.99892 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00128 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47131 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47467 * 119.99479 * 24 22 20 27 27 H 1.48508 * 109.47387 * 239.99788 * 24 22 20 28 28 C 1.38593 * 120.00048 * 213.75845 * 5 4 2 29 29 C 1.50708 * 120.10992 * 0.02562 * 28 5 4 30 30 H 1.09003 * 109.46640 * 239.99161 * 1 2 3 31 31 H 1.08997 * 109.47171 * 359.97438 * 1 2 3 32 32 H 1.09007 * 109.46911 * 120.00180 * 1 2 3 33 33 H 0.96996 * 119.99833 * 5.14607 * 4 2 1 34 34 H 1.08005 * 119.88767 * 0.02562 * 6 5 4 35 35 H 1.07993 * 119.89506 * 179.97438 * 7 6 5 36 36 H 1.07992 * 120.00094 * 180.02562 * 8 7 6 37 37 H 0.97008 * 119.99675 * 0.02562 * 12 10 9 38 38 H 1.09007 * 109.46889 * 59.99461 * 15 13 12 39 39 H 1.08992 * 109.47350 * 179.97438 * 15 13 12 40 40 H 1.08999 * 109.47205 * 300.00178 * 15 13 12 41 41 H 1.08992 * 109.47172 * 54.99505 * 16 13 12 42 42 H 1.09004 * 109.46935 * 175.00376 * 16 13 12 43 43 H 1.09004 * 109.46871 * 300.00222 * 17 16 13 44 44 H 1.08998 * 109.47057 * 60.00164 * 17 16 13 45 45 H 1.09006 * 109.46956 * 300.00230 * 18 17 16 46 46 H 1.08998 * 109.47253 * 59.99997 * 18 17 16 47 47 H 0.97001 * 119.99398 * 0.02562 * 19 18 17 48 48 H 0.97004 * 120.00031 * 180.02562 * 23 22 20 49 49 H 1.08994 * 109.46877 * 263.17065 * 29 28 5 50 50 H 1.08997 * 109.46909 * 23.17558 * 29 28 5 51 51 H 1.08995 * 109.46539 * 143.17176 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.5763 -1.1695 0.1080 6 6 4.2159 -0.1979 0.8688 7 6 5.5935 -0.1961 0.9796 8 6 6.3435 -1.1597 0.3359 9 6 5.7108 -2.1397 -0.4305 10 6 6.5117 -3.1734 -1.1207 11 8 5.9565 -4.0922 -1.6909 12 7 7.8572 -3.0969 -1.1176 13 6 8.6508 -4.1207 -1.8019 14 1 8.1233 -4.4513 -2.6967 15 6 8.8628 -5.3120 -0.8655 16 6 10.0078 -3.5348 -2.1969 17 6 9.8028 -2.4244 -3.2295 18 6 11.1597 -1.8389 -3.6250 19 7 10.9635 -0.7762 -4.6141 20 6 12.0436 -0.1019 -5.1180 21 1 13.0400 -0.3532 -4.7860 22 6 11.8576 0.9054 -6.0549 23 7 10.6431 1.2120 -6.4591 24 14 13.3309 1.8247 -6.7429 25 1 14.5756 1.2934 -6.1314 26 1 13.3852 1.6415 -8.2155 27 1 13.2034 3.2705 -6.4282 28 6 4.3208 -2.1374 -0.5477 29 6 3.6303 -3.1882 -1.3786 30 1 -0.3633 -0.5140 0.8900 31 1 -0.3633 1.0276 0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 1.6989 -2.0055 -0.0762 34 1 3.6342 0.5578 1.3758 35 1 6.0848 0.5616 1.5718 36 1 7.4197 -1.1552 0.4252 37 1 8.3003 -2.3638 -0.6623 38 1 7.8960 -5.7294 -0.5840 39 1 9.4528 -6.0740 -1.3747 40 1 9.3901 -4.9814 0.0293 41 1 10.4970 -3.1238 -1.3139 42 1 10.6313 -4.3192 -2.6260 43 1 9.3134 -2.8354 -4.1126 44 1 9.1792 -1.6400 -2.8006 45 1 11.6494 -1.4281 -2.7420 46 1 11.7829 -2.6235 -4.0541 47 1 10.0684 -0.5497 -4.9115 48 1 10.5132 1.9157 -7.1141 49 1 3.5071 -4.0956 -0.7876 50 1 2.6521 -2.8210 -1.6890 51 1 4.2325 -3.4076 -2.2602 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725407345.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:44 Heat of formation + Delta-G solvation = -46.733991 kcal Electronic energy + Delta-G solvation = -29941.073723 eV Core-core repulsion = 25840.200405 eV Total energy + Delta-G solvation = -4100.873318 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.12488 -40.07874 -38.42239 -36.74345 -35.28284 -34.83749 -32.77243 -32.59730 -31.64971 -30.80054 -29.46752 -28.90203 -27.12213 -25.66493 -24.30772 -23.06819 -22.19791 -21.47090 -20.85538 -20.64313 -20.23618 -18.48662 -17.45211 -16.99226 -16.53111 -16.40524 -16.12888 -15.73672 -15.19048 -14.92840 -14.69829 -14.56645 -14.30337 -13.96763 -13.87111 -13.65353 -13.47863 -13.36800 -13.10198 -12.97362 -12.78539 -12.70779 -12.48490 -12.31584 -12.22487 -12.11499 -11.97948 -11.57571 -11.29328 -11.14099 -10.84877 -10.79134 -10.73219 -10.43181 -10.38788 -10.31893 -9.96163 -9.68796 -9.66451 -9.21235 -8.90090 -8.84026 -8.41622 -6.88376 -5.73064 -3.01822 0.66211 0.98513 2.14964 2.61604 2.81270 3.11651 3.45320 3.50362 3.53097 3.64295 4.25209 4.48696 4.56444 4.59668 4.67764 4.74595 4.79418 4.84909 4.85594 5.05342 5.11396 5.15146 5.19331 5.36742 5.41971 5.43332 5.53464 5.57141 5.59481 5.60539 5.64097 5.79518 5.88490 5.94892 6.00551 6.05012 6.07380 6.12254 6.18646 6.21943 6.29431 6.38072 6.43440 6.51534 6.66323 6.89169 6.92417 6.95204 7.44600 7.68524 7.73001 8.15276 8.45857 9.56618 10.15995 10.50160 11.49948 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009447 B = 0.002281 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2963.337746 B =12271.457038 C =14300.176671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.508 3.492 3 O -0.523 6.523 4 N -0.672 5.672 5 C 0.131 3.869 6 C -0.092 4.092 7 C -0.114 4.114 8 C -0.093 4.093 9 C -0.121 4.121 10 C 0.561 3.439 11 O -0.535 6.535 12 N -0.715 5.715 13 C 0.142 3.858 14 H 0.090 0.910 15 C -0.162 4.162 16 C -0.123 4.123 17 C -0.126 4.126 18 C 0.153 3.847 19 N -0.735 5.735 20 C -0.239 4.239 21 H 0.070 0.930 22 C -0.016 4.016 23 N -0.933 5.933 24 Si 0.907 3.093 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C -0.048 4.048 29 C -0.118 4.118 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.412 0.588 34 H 0.137 0.863 35 H 0.133 0.867 36 H 0.129 0.871 37 H 0.400 0.600 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.016 0.984 46 H 0.017 0.983 47 H 0.383 0.617 48 H 0.254 0.746 49 H 0.075 0.925 50 H 0.052 0.948 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.514 -10.993 19.940 29.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.297 3.703 3 O -0.398 6.398 4 N -0.318 5.318 5 C 0.037 3.963 6 C -0.112 4.112 7 C -0.132 4.132 8 C -0.112 4.112 9 C -0.125 4.125 10 C 0.349 3.651 11 O -0.413 6.413 12 N -0.367 5.367 13 C 0.038 3.962 14 H 0.108 0.892 15 C -0.220 4.220 16 C -0.162 4.162 17 C -0.164 4.164 18 C 0.025 3.975 19 N -0.379 5.379 20 C -0.370 4.370 21 H 0.088 0.912 22 C -0.212 4.212 23 N -0.582 5.582 24 Si 0.738 3.262 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.052 4.052 29 C -0.174 4.174 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.110 0.890 33 H 0.249 0.751 34 H 0.155 0.845 35 H 0.151 0.849 36 H 0.147 0.853 37 H 0.236 0.764 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.034 0.966 46 H 0.035 0.965 47 H 0.217 0.783 48 H 0.064 0.936 49 H 0.094 0.906 50 H 0.071 0.929 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -19.356 -10.833 19.496 29.531 hybrid contribution 0.528 0.721 -0.340 0.956 sum -18.827 -10.112 19.156 28.700 Atomic orbital electron populations 1.21932 0.90538 1.06133 1.04637 1.21060 0.90979 0.83096 0.75179 1.90774 1.70568 1.31172 1.47297 1.43601 1.05059 1.10037 1.73153 1.17419 0.82832 0.97816 0.98262 1.21290 0.94993 0.98088 0.96856 1.20969 0.93253 0.98745 1.00258 1.21308 1.00016 0.93686 0.96187 1.19575 0.92963 0.97946 1.01969 1.18149 0.82162 0.85002 0.79751 1.90710 1.70765 1.34923 1.44940 1.46031 1.05815 1.28978 1.55873 1.21067 0.91953 0.87519 0.95696 0.89188 1.22169 1.02079 0.97926 0.99811 1.21859 0.95237 0.99264 0.99797 1.21737 0.99126 0.97276 0.98255 1.20645 0.93681 0.90919 0.92220 1.42390 1.07128 1.39998 1.48343 1.19285 0.87820 1.12044 1.17865 0.91161 1.24764 0.96512 0.99779 1.00152 1.69677 1.19341 1.33845 1.35327 0.86114 0.81822 0.79612 0.78635 1.20569 1.21866 1.21867 1.19746 0.92163 0.97199 0.96054 1.20997 0.99427 0.95985 1.01036 0.88983 0.88443 0.88977 0.75121 0.84527 0.84899 0.85322 0.76423 0.92298 0.91518 0.92540 0.91422 0.90199 0.91939 0.92045 0.96597 0.96512 0.78329 0.93570 0.90638 0.92921 0.88087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.68 10.32 36.01 0.37 -0.31 16 2 C 0.51 4.36 7.68 -10.98 -0.08 4.28 16 3 O -0.52 -6.90 14.77 5.55 0.08 -6.81 16 4 N -0.67 -5.21 4.76 -9.89 -0.05 -5.26 16 5 C 0.13 1.39 6.25 -83.74 -0.52 0.86 16 6 C -0.09 -1.01 8.65 -39.31 -0.34 -1.35 16 7 C -0.11 -1.14 10.02 -39.67 -0.40 -1.53 16 8 C -0.09 -0.95 9.52 -39.16 -0.37 -1.32 16 9 C -0.12 -1.43 5.87 -104.99 -0.62 -2.05 16 10 C 0.56 7.25 7.66 -12.33 -0.09 7.15 16 11 O -0.53 -8.04 13.03 5.32 0.07 -7.98 16 12 N -0.72 -8.03 4.48 -54.74 -0.25 -8.28 16 13 C 0.14 1.61 2.57 -67.93 -0.17 1.43 16 14 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 15 C -0.16 -1.57 9.48 37.16 0.35 -1.21 16 16 C -0.12 -1.45 4.75 -26.73 -0.13 -1.58 16 17 C -0.13 -2.02 5.22 -26.73 -0.14 -2.16 16 18 C 0.15 3.10 6.26 -4.05 -0.03 3.08 16 19 N -0.73 -19.28 5.60 -59.92 -0.34 -19.62 16 20 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 21 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 22 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 23 N -0.93 -29.07 13.06 55.49 0.72 -28.35 16 24 Si 0.91 22.88 29.55 -169.99 -5.02 17.86 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 28 C -0.05 -0.55 5.93 -104.02 -0.62 -1.16 16 29 C -0.12 -1.20 8.30 36.01 0.30 -0.90 16 30 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.10 0.42 8.12 -51.93 -0.42 0.00 16 32 H 0.09 0.21 8.14 -51.92 -0.42 -0.22 16 33 H 0.41 1.88 7.66 -40.82 -0.31 1.57 16 34 H 0.14 1.52 6.41 -52.48 -0.34 1.18 16 35 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.13 1.03 6.45 -52.49 -0.34 0.70 16 37 H 0.40 3.83 6.67 -40.82 -0.27 3.56 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.06 1.01 7.75 -51.93 -0.40 0.61 16 45 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 47 H 0.38 10.64 7.67 -40.82 -0.31 10.33 16 48 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 49 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 50 H 0.05 0.42 6.81 -51.93 -0.35 0.06 16 51 H 0.10 1.29 5.91 -51.93 -0.31 0.98 16 LS Contribution 415.35 15.07 6.26 6.26 Total: -1.00 -36.86 415.35 -9.32 -46.19 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -8.07 Total: 10.36 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -2.74 Total: -4.38 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: 0.10 Total: -61.50 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: 0.15 Total: -14.79 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -36.86 -9.32 -46.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725407345.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.546 kcal (2) G-P(sol) polarization free energy of solvation -36.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds