Wall clock time and date at job start Wed Apr 1 2020 05:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21292 * 119.99955 * 2 1 4 4 N 1.34778 * 120.00324 * 180.02562 * 2 1 3 5 5 C 1.39959 * 119.99893 * 185.13687 * 4 2 1 6 6 C 1.38990 * 119.99883 * 33.48924 * 5 4 2 7 7 C 1.38207 * 120.22700 * 179.97438 * 6 5 4 8 8 C 1.38030 * 120.21930 * 359.97438 * 7 6 5 9 9 C 1.39576 * 119.99376 * 0.02562 * 8 7 6 10 10 C 1.47859 * 120.10785 * 180.02562 * 9 8 7 11 11 O 1.21557 * 119.99816 * 173.61671 * 10 9 8 12 12 N 1.34772 * 120.00589 * 353.61388 * 10 9 8 13 13 C 1.46498 * 120.00651 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.46838 * 34.99650 * 13 12 10 15 15 C 1.53003 * 109.47078 * 274.99804 * 13 12 10 16 16 C 1.53003 * 109.47242 * 155.00089 * 13 12 10 17 17 C 1.53006 * 109.46905 * 294.99775 * 16 13 12 18 18 C 1.52993 * 109.47126 * 180.02562 * 17 16 13 19 19 N 1.46497 * 109.47451 * 179.97438 * 18 17 16 20 20 C 1.36931 * 120.00234 * 179.97438 * 19 18 17 21 21 H 1.07997 * 120.00242 * 359.97438 * 20 19 18 22 22 C 1.38813 * 120.00036 * 180.02562 * 20 19 18 23 23 N 1.31617 * 119.99892 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00128 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47131 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47467 * 119.99479 * 24 22 20 27 27 H 1.48508 * 109.47387 * 239.99788 * 24 22 20 28 28 C 1.38593 * 120.00048 * 213.75845 * 5 4 2 29 29 C 1.50708 * 120.10992 * 0.02562 * 28 5 4 30 30 H 1.09003 * 109.46640 * 239.99161 * 1 2 3 31 31 H 1.08997 * 109.47171 * 359.97438 * 1 2 3 32 32 H 1.09007 * 109.46911 * 120.00180 * 1 2 3 33 33 H 0.96996 * 119.99833 * 5.14607 * 4 2 1 34 34 H 1.08005 * 119.88767 * 0.02562 * 6 5 4 35 35 H 1.07993 * 119.89506 * 179.97438 * 7 6 5 36 36 H 1.07992 * 120.00094 * 180.02562 * 8 7 6 37 37 H 0.97008 * 119.99675 * 0.02562 * 12 10 9 38 38 H 1.09007 * 109.46889 * 59.99461 * 15 13 12 39 39 H 1.08992 * 109.47350 * 179.97438 * 15 13 12 40 40 H 1.08999 * 109.47205 * 300.00178 * 15 13 12 41 41 H 1.08992 * 109.47172 * 54.99505 * 16 13 12 42 42 H 1.09004 * 109.46935 * 175.00376 * 16 13 12 43 43 H 1.09004 * 109.46871 * 300.00222 * 17 16 13 44 44 H 1.08998 * 109.47057 * 60.00164 * 17 16 13 45 45 H 1.09006 * 109.46956 * 300.00230 * 18 17 16 46 46 H 1.08998 * 109.47253 * 59.99997 * 18 17 16 47 47 H 0.97001 * 119.99398 * 0.02562 * 19 18 17 48 48 H 0.97004 * 120.00031 * 180.02562 * 23 22 20 49 49 H 1.08994 * 109.46877 * 263.17065 * 29 28 5 50 50 H 1.08997 * 109.46909 * 23.17558 * 29 28 5 51 51 H 1.08995 * 109.46539 * 143.17176 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.5763 -1.1695 0.1080 6 6 4.2159 -0.1979 0.8688 7 6 5.5935 -0.1961 0.9796 8 6 6.3435 -1.1597 0.3359 9 6 5.7108 -2.1397 -0.4305 10 6 6.5117 -3.1734 -1.1207 11 8 5.9565 -4.0922 -1.6909 12 7 7.8572 -3.0969 -1.1176 13 6 8.6508 -4.1207 -1.8019 14 1 8.1233 -4.4513 -2.6967 15 6 8.8628 -5.3120 -0.8655 16 6 10.0078 -3.5348 -2.1969 17 6 9.8028 -2.4244 -3.2295 18 6 11.1597 -1.8389 -3.6250 19 7 10.9635 -0.7762 -4.6141 20 6 12.0436 -0.1019 -5.1180 21 1 13.0400 -0.3532 -4.7860 22 6 11.8576 0.9054 -6.0549 23 7 10.6431 1.2120 -6.4591 24 14 13.3309 1.8247 -6.7429 25 1 14.5756 1.2934 -6.1314 26 1 13.3852 1.6415 -8.2155 27 1 13.2034 3.2705 -6.4282 28 6 4.3208 -2.1374 -0.5477 29 6 3.6303 -3.1882 -1.3786 30 1 -0.3633 -0.5140 0.8900 31 1 -0.3633 1.0276 0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 1.6989 -2.0055 -0.0762 34 1 3.6342 0.5578 1.3758 35 1 6.0848 0.5616 1.5718 36 1 7.4197 -1.1552 0.4252 37 1 8.3003 -2.3638 -0.6623 38 1 7.8960 -5.7294 -0.5840 39 1 9.4528 -6.0740 -1.3747 40 1 9.3901 -4.9814 0.0293 41 1 10.4970 -3.1238 -1.3139 42 1 10.6313 -4.3192 -2.6260 43 1 9.3134 -2.8354 -4.1126 44 1 9.1792 -1.6400 -2.8006 45 1 11.6494 -1.4281 -2.7420 46 1 11.7829 -2.6235 -4.0541 47 1 10.0684 -0.5497 -4.9115 48 1 10.5132 1.9157 -7.1141 49 1 3.5071 -4.0956 -0.7876 50 1 2.6521 -2.8210 -1.6890 51 1 4.2325 -3.4076 -2.2602 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725407345.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:43 Heat of formation + Delta-G solvation = -71.609517 kcal Electronic energy + Delta-G solvation = -29942.152406 eV Core-core repulsion = 25840.200405 eV Total energy + Delta-G solvation = -4101.952002 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.92355 -40.95366 -39.27041 -37.91515 -36.55032 -36.02436 -34.24367 -33.47011 -32.90751 -31.72441 -30.82296 -29.60064 -27.91449 -27.22602 -25.27836 -24.68219 -23.13905 -22.36617 -22.24480 -21.59329 -21.08902 -19.30329 -19.11766 -18.14001 -17.48338 -17.23705 -16.90544 -16.64280 -16.54784 -16.16577 -15.88983 -15.55888 -15.40479 -15.34066 -15.13213 -14.74066 -14.57930 -14.33132 -14.29212 -13.80311 -13.50445 -13.47712 -13.26785 -13.20256 -13.17872 -13.09465 -12.97538 -12.86426 -12.80832 -12.40478 -12.33015 -12.20091 -12.04628 -11.86053 -11.70119 -11.51275 -11.48529 -11.09092 -10.95335 -10.65453 -10.16227 -9.76837 -9.19373 -9.01594 -7.96759 -5.26236 -0.20757 0.18190 1.45957 1.46975 1.47420 1.57641 1.88892 1.96632 2.26156 2.54866 2.78989 3.37051 3.57994 3.69234 3.71306 3.82558 3.92268 4.00490 4.02753 4.11469 4.29883 4.31628 4.40180 4.42956 4.54037 4.59648 4.62887 4.65381 4.69436 4.72156 4.77551 4.83930 4.86958 4.93571 5.01327 5.07366 5.11783 5.13890 5.17167 5.29143 5.33677 5.35675 5.38690 5.42960 5.46717 5.50223 5.61700 5.87163 6.25738 6.36491 6.53384 7.06595 7.20601 7.30982 8.08613 8.30266 9.27297 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009447 B = 0.002281 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2963.337746 B =12271.457038 C =14300.176671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.503 3.497 3 O -0.576 6.576 4 N -0.662 5.662 5 C 0.125 3.875 6 C -0.104 4.104 7 C -0.116 4.116 8 C -0.094 4.094 9 C -0.139 4.139 10 C 0.557 3.443 11 O -0.562 6.562 12 N -0.709 5.709 13 C 0.144 3.856 14 H 0.067 0.933 15 C -0.153 4.153 16 C -0.110 4.110 17 C -0.113 4.113 18 C 0.150 3.850 19 N -0.751 5.751 20 C -0.245 4.245 21 H 0.079 0.921 22 C -0.081 4.081 23 N -0.973 5.973 24 Si 0.976 3.024 25 H -0.263 1.263 26 H -0.293 1.293 27 H -0.293 1.293 28 C -0.062 4.062 29 C -0.111 4.111 30 H 0.120 0.880 31 H 0.092 0.908 32 H 0.114 0.886 33 H 0.428 0.572 34 H 0.132 0.868 35 H 0.155 0.845 36 H 0.150 0.850 37 H 0.409 0.591 38 H 0.045 0.955 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.045 0.955 44 H 0.055 0.945 45 H 0.026 0.974 46 H 0.021 0.979 47 H 0.371 0.629 48 H 0.251 0.749 49 H 0.081 0.919 50 H 0.073 0.927 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.018 -11.702 21.405 30.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.294 3.706 3 O -0.455 6.455 4 N -0.309 5.309 5 C 0.030 3.970 6 C -0.125 4.125 7 C -0.134 4.134 8 C -0.113 4.113 9 C -0.142 4.142 10 C 0.346 3.654 11 O -0.443 6.443 12 N -0.361 5.361 13 C 0.040 3.960 14 H 0.085 0.915 15 C -0.211 4.211 16 C -0.148 4.148 17 C -0.151 4.151 18 C 0.024 3.976 19 N -0.394 5.394 20 C -0.377 4.377 21 H 0.096 0.904 22 C -0.273 4.273 23 N -0.624 5.624 24 Si 0.805 3.195 25 H -0.187 1.187 26 H -0.221 1.221 27 H -0.220 1.220 28 C -0.066 4.066 29 C -0.167 4.167 30 H 0.138 0.862 31 H 0.111 0.889 32 H 0.133 0.867 33 H 0.267 0.733 34 H 0.150 0.850 35 H 0.172 0.828 36 H 0.168 0.832 37 H 0.246 0.754 38 H 0.064 0.936 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.107 0.893 42 H 0.111 0.889 43 H 0.064 0.936 44 H 0.073 0.927 45 H 0.044 0.956 46 H 0.039 0.961 47 H 0.202 0.798 48 H 0.060 0.940 49 H 0.100 0.900 50 H 0.091 0.909 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.842 -11.603 21.002 30.508 hybrid contribution 0.359 0.898 -0.755 1.227 sum -18.483 -10.705 20.248 29.431 Atomic orbital electron populations 1.21968 0.86579 1.06671 1.06999 1.21969 0.92774 0.82252 0.73583 1.90750 1.71921 1.32963 1.49859 1.43615 1.04071 1.10872 1.72364 1.17530 0.84208 0.97352 0.97917 1.21434 0.95644 0.98165 0.97234 1.21256 0.93031 0.99020 1.00106 1.21539 1.01140 0.93076 0.95526 1.19686 0.93349 0.98399 1.02791 1.18375 0.82633 0.84917 0.79495 1.90696 1.71346 1.36084 1.46206 1.46003 1.05417 1.29208 1.55469 1.21005 0.91277 0.88213 0.95471 0.91490 1.22088 1.01808 0.97217 1.00017 1.21766 0.95758 0.98060 0.99196 1.21597 0.96446 0.98255 0.98840 1.20868 0.96136 0.89562 0.91081 1.42676 1.05987 1.41225 1.49465 1.19726 0.88814 1.11786 1.17346 0.90353 1.25655 0.99315 1.01232 1.01115 1.69844 1.21590 1.34661 1.36261 0.85026 0.79049 0.77887 0.77518 1.18714 1.22051 1.21975 1.19925 0.92366 0.97750 0.96526 1.20903 0.99804 0.96186 0.99813 0.86204 0.88868 0.86727 0.73265 0.85006 0.82779 0.83221 0.75352 0.93591 0.90222 0.90941 0.89308 0.88891 0.93615 0.92664 0.95570 0.96101 0.79807 0.94044 0.90002 0.90853 0.90812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 10.32 71.24 0.74 -0.22 16 2 C 0.50 8.34 7.68 87.66 0.67 9.01 16 3 O -0.58 -15.52 14.77 -3.07 -0.05 -15.56 16 4 N -0.66 -9.75 4.76 -303.59 -1.44 -11.20 16 5 C 0.12 2.64 6.25 38.11 0.24 2.87 16 6 C -0.10 -2.30 8.65 22.44 0.19 -2.10 16 7 C -0.12 -2.25 10.02 22.21 0.22 -2.02 16 8 C -0.09 -1.85 9.52 22.54 0.21 -1.64 16 9 C -0.14 -3.30 5.87 -20.10 -0.12 -3.41 16 10 C 0.56 14.50 7.66 86.79 0.67 15.17 16 11 O -0.56 -17.44 13.03 -3.90 -0.05 -17.49 16 12 N -0.71 -15.38 4.48 -445.39 -1.99 -17.37 16 13 C 0.14 3.12 2.57 44.99 0.12 3.23 16 14 H 0.07 1.79 7.58 -2.39 -0.02 1.77 16 15 C -0.15 -2.67 9.48 71.98 0.68 -1.99 16 16 C -0.11 -2.34 4.75 30.60 0.15 -2.20 16 17 C -0.11 -3.55 5.22 30.59 0.16 -3.39 16 18 C 0.15 5.91 6.26 86.38 0.54 6.45 16 19 N -0.75 -39.54 5.60 -343.47 -1.92 -41.47 16 20 C -0.24 -14.04 9.99 84.03 0.84 -13.20 16 21 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 22 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 23 N -0.97 -61.57 13.06 21.65 0.28 -61.29 16 24 Si 0.98 47.05 29.55 68.60 2.03 49.08 16 25 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 27 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 28 C -0.06 -1.42 5.93 -19.47 -0.12 -1.54 16 29 C -0.11 -2.27 8.30 71.24 0.59 -1.68 16 30 H 0.12 0.07 8.14 -2.39 -0.02 0.05 16 31 H 0.09 0.68 8.12 -2.39 -0.02 0.66 16 32 H 0.11 0.20 8.14 -2.38 -0.02 0.18 16 33 H 0.43 3.27 7.66 -92.71 -0.71 2.56 16 34 H 0.13 3.01 6.41 -2.91 -0.02 3.00 16 35 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 36 H 0.15 2.17 6.45 -2.91 -0.02 2.15 16 37 H 0.41 7.21 6.67 -92.70 -0.62 6.59 16 38 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 41 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 43 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 44 H 0.05 1.79 7.75 -2.39 -0.02 1.77 16 45 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 46 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.37 21.03 7.67 -92.71 -0.71 20.32 16 48 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 49 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 50 H 0.07 1.12 6.81 -2.39 -0.02 1.10 16 51 H 0.07 1.97 5.91 -2.39 -0.01 1.95 16 Total: -1.00 -81.72 415.35 2.03 -79.69 By element: Atomic # 1 Polarization: 37.68 SS G_CDS: -1.07 Total: 36.61 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: 6.25 Total: -1.00 kcal Atomic # 7 Polarization: -126.25 SS G_CDS: -5.08 Total: -131.33 kcal Atomic # 8 Polarization: -32.96 SS G_CDS: -0.10 Total: -33.05 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -81.72 2.03 -79.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725407345.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.083 kcal (2) G-P(sol) polarization free energy of solvation -81.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds