Wall clock time and date at job start Wed Apr 1 2020 05:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31700 * 119.71352 * 2 1 4 4 C 1.31927 * 121.87775 * 180.02562 * 3 2 1 5 5 C 1.50695 * 119.45751 * 179.97438 * 4 3 2 6 6 C 1.53006 * 117.49923 * 163.62222 * 5 4 3 7 7 C 1.52995 * 60.00061 * 252.51389 * 6 5 4 8 8 C 1.38350 * 121.07956 * 0.02562 * 4 3 2 9 9 C 1.38350 * 119.30580 * 359.71531 * 8 4 3 10 10 C 1.39522 * 119.71912 * 180.02562 * 2 1 3 11 11 C 1.47841 * 120.55805 * 359.97438 * 10 2 1 12 12 O 1.21544 * 120.00033 * 49.39248 * 11 10 2 13 13 N 1.34779 * 119.99496 * 229.39242 * 11 10 2 14 14 C 1.46497 * 120.00198 * 5.22243 * 13 11 10 15 15 C 1.46499 * 119.99679 * 185.21087 * 13 11 10 16 16 C 1.52994 * 109.47536 * 270.00589 * 15 13 11 17 17 H 1.09007 * 109.47030 * 304.99799 * 16 15 13 18 18 O 1.42896 * 109.47134 * 65.00305 * 16 15 13 19 19 C 1.53000 * 109.47317 * 185.00177 * 16 15 13 20 20 N 1.46496 * 109.47342 * 179.97438 * 19 16 15 21 21 C 1.46498 * 120.00247 * 269.99957 * 20 19 16 22 22 C 1.36933 * 119.99997 * 90.00343 * 20 19 16 23 23 H 1.08003 * 119.99827 * 330.00204 * 22 20 19 24 24 C 1.38815 * 120.00447 * 149.73043 * 22 20 19 25 25 N 1.31621 * 119.99530 * 2.37189 * 24 22 20 26 26 Si 1.86793 * 120.00093 * 182.36806 * 24 22 20 27 27 H 1.48503 * 109.47264 * 89.99924 * 26 24 22 28 28 H 1.48502 * 109.47034 * 209.99766 * 26 24 22 29 29 H 1.48499 * 109.47397 * 329.99865 * 26 24 22 30 30 H 1.09002 * 109.46996 * 274.00478 * 1 2 3 31 31 H 1.08999 * 109.47537 * 34.01099 * 1 2 3 32 32 H 1.09008 * 109.46854 * 154.01362 * 1 2 3 33 33 H 1.09002 * 115.55532 * 309.33232 * 5 4 3 34 34 H 1.09004 * 117.49620 * 0.02562 * 6 5 4 35 35 H 1.08998 * 117.50158 * 145.02140 * 6 5 4 36 36 H 1.09005 * 117.50027 * 252.50916 * 7 6 5 37 37 H 1.08998 * 117.52365 * 107.47950 * 7 6 5 38 38 H 1.08001 * 120.34522 * 179.97438 * 8 4 3 39 39 H 1.08003 * 120.86207 * 180.29987 * 9 8 4 40 40 H 1.09000 * 109.46782 * 266.19868 * 14 13 11 41 41 H 1.08999 * 109.47428 * 26.19606 * 14 13 11 42 42 H 1.09004 * 109.47464 * 146.20016 * 14 13 11 43 43 H 1.09007 * 109.47001 * 150.00297 * 15 13 11 44 44 H 1.09001 * 109.46903 * 30.01066 * 15 13 11 45 45 H 0.96696 * 114.00567 * 59.99754 * 18 16 15 46 46 H 1.09007 * 109.47259 * 59.99346 * 19 16 15 47 47 H 1.09000 * 109.46801 * 300.00176 * 19 16 15 48 48 H 1.09000 * 109.46873 * 273.89935 * 21 20 19 49 49 H 1.08998 * 109.47092 * 33.89423 * 21 20 19 50 50 H 1.08997 * 109.47742 * 153.89724 * 21 20 19 51 51 H 0.97002 * 119.99781 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1597 1.1438 0.0000 4 6 3.4781 1.1937 -0.0005 5 6 4.1691 2.5328 -0.0011 6 6 5.6503 2.5637 0.3811 7 6 4.5987 3.1066 1.3507 8 6 4.2365 0.0366 -0.0016 9 6 3.5987 -1.1912 0.0039 10 6 2.1986 -1.2117 -0.0005 11 6 1.4656 -2.4956 -0.0005 12 8 0.5690 -2.6835 -0.7994 13 7 1.7917 -3.4576 0.8853 14 6 2.7925 -3.1907 1.9213 15 6 1.1450 -4.7702 0.8123 16 6 -0.1202 -4.7640 1.6725 17 1 0.1326 -4.4600 2.6883 18 8 -1.0662 -3.8455 1.1217 19 6 -0.7273 -6.1682 1.6966 20 7 -1.9385 -6.1624 2.5208 21 6 -1.8492 -6.4424 3.9560 22 6 -3.1540 -5.8954 1.9496 23 1 -3.2151 -5.2467 1.0883 24 6 -4.3071 -6.4630 2.4742 25 7 -4.2379 -7.2202 3.5485 26 14 -5.9570 -6.1519 1.6554 27 1 -6.2063 -7.1977 0.6310 28 1 -7.0329 -6.1944 2.6781 29 1 -5.9436 -4.8164 1.0063 30 1 -0.3633 0.0718 1.0252 31 1 -0.3634 0.8518 -0.5748 32 1 -0.3633 -0.9238 -0.4503 33 1 3.8305 3.2363 -0.7617 34 1 6.1251 1.6152 0.6324 35 1 6.2866 3.2874 -0.1283 36 1 4.5431 4.1876 1.4792 37 1 4.3811 2.5157 2.2403 38 1 5.3151 0.0912 -0.0024 39 1 4.1661 -2.1102 0.0080 40 1 3.7723 -3.5170 1.5725 41 1 2.8198 -2.1220 2.1335 42 1 2.5302 -3.7348 2.8287 43 1 1.8306 -5.5339 1.1797 44 1 0.8799 -4.9875 -0.2224 45 1 -1.3370 -4.0547 0.2173 46 1 -0.0057 -6.8689 2.1167 47 1 -0.9800 -6.4722 0.6808 48 1 -1.8898 -7.5194 4.1192 49 1 -0.9091 -6.0512 4.3447 50 1 -2.6824 -5.9651 4.4719 51 1 -5.0436 -7.6171 3.9149 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725720416.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:49:29 Heat of formation + Delta-G solvation = 9.994952 kcal Electronic energy + Delta-G solvation = -31072.759818 eV Core-core repulsion = 26974.346451 eV Total energy + Delta-G solvation = -4098.413366 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.14479 -39.55495 -37.53458 -37.00674 -35.47363 -34.46540 -33.12408 -32.39644 -31.30688 -29.61604 -27.92260 -27.07902 -26.19069 -25.73040 -24.64576 -23.17253 -22.31502 -22.17563 -21.02066 -20.39679 -19.68393 -17.53433 -17.31063 -16.85413 -16.51566 -16.25951 -15.72638 -15.32867 -15.00374 -14.84529 -14.61157 -14.49667 -14.24917 -14.09693 -13.57408 -13.48735 -13.19807 -13.08549 -12.78815 -12.71063 -12.64970 -12.42135 -12.10226 -12.01744 -11.85187 -11.81149 -11.55843 -11.02988 -11.02090 -10.90777 -10.79668 -10.62553 -10.53583 -10.25488 -10.10660 -10.00158 -9.89408 -9.87503 -9.60525 -9.52025 -8.98268 -8.55992 -8.32569 -6.52195 -5.66881 -3.15069 0.52199 0.94181 2.60724 2.92227 3.22357 3.44572 3.50517 3.52035 3.53608 3.78366 4.29949 4.31094 4.44086 4.46091 4.54865 4.56808 4.70483 4.81236 4.93385 5.03026 5.08153 5.17471 5.19258 5.28240 5.32872 5.39218 5.45986 5.49993 5.51281 5.54844 5.64058 5.65338 5.70127 5.71739 5.75834 5.92742 5.98313 6.00088 6.08210 6.13729 6.43450 6.49107 6.56696 6.77616 6.86931 7.30075 7.46965 7.72264 7.79475 7.94534 8.13991 8.48779 8.57490 9.34563 9.93950 10.46279 11.40124 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019360 B = 0.002300 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.937533 B =12173.577331 C =12789.093534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.191 3.809 3 N -0.482 5.482 4 C 0.179 3.821 5 C -0.111 4.111 6 C -0.173 4.173 7 C -0.160 4.160 8 C -0.186 4.186 9 C -0.039 4.039 10 C -0.183 4.183 11 C 0.571 3.429 12 O -0.516 6.516 13 N -0.602 5.602 14 C 0.077 3.923 15 C 0.082 3.918 16 C 0.072 3.928 17 H 0.083 0.917 18 O -0.538 6.538 19 C 0.124 3.876 20 N -0.593 5.593 21 C 0.164 3.836 22 C -0.239 4.239 23 H 0.069 0.931 24 C 0.000 4.000 25 N -0.913 5.913 26 Si 0.904 3.096 27 H -0.288 1.288 28 H -0.292 1.292 29 H -0.279 1.279 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.123 0.877 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.055 0.945 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.368 0.632 46 H 0.041 0.959 47 H 0.050 0.950 48 H 0.015 0.985 49 H -0.015 1.015 50 H 0.061 0.939 51 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.737 15.179 -5.151 28.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.053 3.947 3 N -0.191 5.191 4 C 0.041 3.959 5 C -0.130 4.130 6 C -0.210 4.210 7 C -0.197 4.197 8 C -0.206 4.206 9 C -0.065 4.065 10 C -0.188 4.188 11 C 0.357 3.643 12 O -0.392 6.392 13 N -0.335 5.335 14 C -0.066 4.066 15 C -0.041 4.041 16 C 0.008 3.992 17 H 0.101 0.899 18 O -0.342 6.342 19 C -0.005 4.005 20 N -0.315 5.315 21 C 0.020 3.980 22 C -0.369 4.369 23 H 0.086 0.914 24 C -0.197 4.197 25 N -0.559 5.559 26 Si 0.734 3.266 27 H -0.215 1.215 28 H -0.219 1.219 29 H -0.204 1.204 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.125 0.875 33 H 0.141 0.859 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.114 0.886 38 H 0.158 0.842 39 H 0.157 0.843 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.103 0.897 45 H 0.215 0.785 46 H 0.059 0.941 47 H 0.069 0.931 48 H 0.034 0.966 49 H 0.004 0.996 50 H 0.079 0.921 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 22.678 16.008 -4.866 28.182 hybrid contribution -0.269 -0.983 -0.703 1.238 sum 22.408 15.025 -5.569 27.548 Atomic orbital electron populations 1.21098 0.87524 1.05753 1.03860 1.21433 0.97427 0.86190 0.89687 1.67331 1.09081 1.28856 1.13870 1.20490 0.89156 0.93675 0.92580 1.20812 0.96253 0.94966 1.00961 1.23109 0.90928 1.03483 1.03483 1.22975 1.02285 1.01397 0.93063 1.21816 1.01531 0.92290 1.04963 1.21715 0.92876 0.98669 0.93240 1.20799 0.94560 0.95271 1.08150 1.17934 0.82594 0.82801 0.80925 1.90722 1.29473 1.79523 1.39526 1.47664 1.41373 1.13542 1.30902 1.21868 0.91071 1.02210 0.91475 1.22454 0.96178 0.82687 1.02760 1.23111 0.86498 0.93662 0.95917 0.89901 1.86552 1.62202 1.52016 1.33438 1.21335 0.90079 0.92804 0.96255 1.43673 1.02110 1.82047 1.03622 1.20813 0.95640 0.97834 0.83746 1.19187 0.83693 1.21651 1.12370 0.91357 1.25250 0.98624 0.97667 0.98176 1.70039 1.27268 1.36099 1.22488 0.86255 0.83774 0.77907 0.78677 1.21529 1.21860 1.20396 0.90011 0.90349 0.87523 0.85875 0.88202 0.87924 0.87995 0.88569 0.84237 0.84251 0.92675 0.91235 0.90677 0.90001 0.89683 0.78521 0.94109 0.93121 0.96633 0.99644 0.92067 0.93887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.71 9.86 36.00 0.35 -1.36 16 2 C 0.19 2.58 6.82 -82.17 -0.56 2.02 16 3 N -0.48 -6.21 10.17 -5.42 -0.06 -6.27 16 4 C 0.18 1.84 6.46 -82.51 -0.53 1.31 16 5 C -0.11 -0.86 6.21 -91.77 -0.57 -1.43 16 6 C -0.17 -0.90 9.79 -26.73 -0.26 -1.16 16 7 C -0.16 -1.02 10.23 -26.73 -0.27 -1.29 16 8 C -0.19 -1.60 9.34 -39.50 -0.37 -1.97 16 9 C -0.04 -0.37 8.10 -38.87 -0.31 -0.68 16 10 C -0.18 -2.29 4.67 -104.82 -0.49 -2.78 16 11 C 0.57 8.16 6.40 -12.33 -0.08 8.08 16 12 O -0.52 -8.89 13.05 -7.81 -0.10 -8.99 16 13 N -0.60 -7.52 2.86 -182.70 -0.52 -8.04 16 14 C 0.08 0.70 9.14 59.85 0.55 1.24 16 15 C 0.08 1.09 5.12 -4.05 -0.02 1.07 16 16 C 0.07 1.24 3.48 -26.73 -0.09 1.15 16 17 H 0.08 1.52 8.14 -51.92 -0.42 1.10 16 18 O -0.54 -10.79 10.96 -48.37 -0.53 -11.32 16 19 C 0.12 2.46 5.40 -4.04 -0.02 2.44 16 20 N -0.59 -15.01 2.87 -181.12 -0.52 -15.53 16 21 C 0.16 4.14 8.98 59.85 0.54 4.67 16 22 C -0.24 -6.67 9.09 -15.06 -0.14 -6.80 16 23 H 0.07 1.89 7.31 -52.48 -0.38 1.50 16 24 C 0.00 0.00 5.31 -17.43 -0.09 -0.09 16 25 N -0.91 -27.15 10.50 55.49 0.58 -26.57 16 26 Si 0.90 22.55 29.55 -169.99 -5.02 17.53 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 29 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.11 1.66 5.36 -51.92 -0.28 1.38 16 33 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.10 0.44 6.38 -51.93 -0.33 0.11 16 35 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.14 0.79 6.23 -52.49 -0.33 0.46 16 39 H 0.14 0.99 7.02 -52.48 -0.37 0.62 16 40 H 0.05 0.36 7.52 -51.93 -0.39 -0.03 16 41 H 0.07 0.63 6.31 -51.93 -0.33 0.31 16 42 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 43 H 0.08 0.88 8.07 -51.93 -0.42 0.46 16 44 H 0.08 1.19 7.50 -51.93 -0.39 0.80 16 45 H 0.37 7.05 8.60 45.56 0.39 7.45 16 46 H 0.04 0.73 8.07 -51.92 -0.42 0.31 16 47 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 48 H 0.02 0.41 7.80 -51.93 -0.40 0.00 16 49 H -0.01 -0.33 8.10 -51.93 -0.42 -0.75 16 50 H 0.06 1.70 6.79 -51.93 -0.35 1.35 16 51 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 408.20 15.07 6.15 6.15 Total: -1.00 -34.15 408.20 -9.75 -43.90 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -7.35 Total: 4.71 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -2.38 Total: 4.42 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: -0.51 Total: -56.40 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.63 Total: -20.31 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.15 -9.75 -43.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725720416.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.895 kcal (2) G-P(sol) polarization free energy of solvation -34.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds