Wall clock time and date at job start Wed Apr 1 2020 05:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31700 * 119.71352 * 2 1 4 4 C 1.31927 * 121.87775 * 180.02562 * 3 2 1 5 5 C 1.50695 * 119.45751 * 179.97438 * 4 3 2 6 6 C 1.53006 * 117.49923 * 163.62222 * 5 4 3 7 7 C 1.52995 * 60.00061 * 252.51389 * 6 5 4 8 8 C 1.38350 * 121.07956 * 0.02562 * 4 3 2 9 9 C 1.38350 * 119.30580 * 359.71531 * 8 4 3 10 10 C 1.39522 * 119.71912 * 180.02562 * 2 1 3 11 11 C 1.47841 * 120.55805 * 359.97438 * 10 2 1 12 12 O 1.21544 * 120.00033 * 49.39248 * 11 10 2 13 13 N 1.34779 * 119.99496 * 229.39242 * 11 10 2 14 14 C 1.46497 * 120.00198 * 5.22243 * 13 11 10 15 15 C 1.46499 * 119.99679 * 185.21087 * 13 11 10 16 16 C 1.52994 * 109.47536 * 270.00589 * 15 13 11 17 17 H 1.09007 * 109.47030 * 304.99799 * 16 15 13 18 18 O 1.42896 * 109.47134 * 65.00305 * 16 15 13 19 19 C 1.53000 * 109.47317 * 185.00177 * 16 15 13 20 20 N 1.46496 * 109.47342 * 179.97438 * 19 16 15 21 21 C 1.46498 * 120.00247 * 269.99957 * 20 19 16 22 22 C 1.36933 * 119.99997 * 90.00343 * 20 19 16 23 23 H 1.08003 * 119.99827 * 330.00204 * 22 20 19 24 24 C 1.38815 * 120.00447 * 149.73043 * 22 20 19 25 25 N 1.31621 * 119.99530 * 2.37189 * 24 22 20 26 26 Si 1.86793 * 120.00093 * 182.36806 * 24 22 20 27 27 H 1.48503 * 109.47264 * 89.99924 * 26 24 22 28 28 H 1.48502 * 109.47034 * 209.99766 * 26 24 22 29 29 H 1.48499 * 109.47397 * 329.99865 * 26 24 22 30 30 H 1.09002 * 109.46996 * 274.00478 * 1 2 3 31 31 H 1.08999 * 109.47537 * 34.01099 * 1 2 3 32 32 H 1.09008 * 109.46854 * 154.01362 * 1 2 3 33 33 H 1.09002 * 115.55532 * 309.33232 * 5 4 3 34 34 H 1.09004 * 117.49620 * 0.02562 * 6 5 4 35 35 H 1.08998 * 117.50158 * 145.02140 * 6 5 4 36 36 H 1.09005 * 117.50027 * 252.50916 * 7 6 5 37 37 H 1.08998 * 117.52365 * 107.47950 * 7 6 5 38 38 H 1.08001 * 120.34522 * 179.97438 * 8 4 3 39 39 H 1.08003 * 120.86207 * 180.29987 * 9 8 4 40 40 H 1.09000 * 109.46782 * 266.19868 * 14 13 11 41 41 H 1.08999 * 109.47428 * 26.19606 * 14 13 11 42 42 H 1.09004 * 109.47464 * 146.20016 * 14 13 11 43 43 H 1.09007 * 109.47001 * 150.00297 * 15 13 11 44 44 H 1.09001 * 109.46903 * 30.01066 * 15 13 11 45 45 H 0.96696 * 114.00567 * 59.99754 * 18 16 15 46 46 H 1.09007 * 109.47259 * 59.99346 * 19 16 15 47 47 H 1.09000 * 109.46801 * 300.00176 * 19 16 15 48 48 H 1.09000 * 109.46873 * 273.89935 * 21 20 19 49 49 H 1.08998 * 109.47092 * 33.89423 * 21 20 19 50 50 H 1.08997 * 109.47742 * 153.89724 * 21 20 19 51 51 H 0.97002 * 119.99781 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1597 1.1438 0.0000 4 6 3.4781 1.1937 -0.0005 5 6 4.1691 2.5328 -0.0011 6 6 5.6503 2.5637 0.3811 7 6 4.5987 3.1066 1.3507 8 6 4.2365 0.0366 -0.0016 9 6 3.5987 -1.1912 0.0039 10 6 2.1986 -1.2117 -0.0005 11 6 1.4656 -2.4956 -0.0005 12 8 0.5690 -2.6835 -0.7994 13 7 1.7917 -3.4576 0.8853 14 6 2.7925 -3.1907 1.9213 15 6 1.1450 -4.7702 0.8123 16 6 -0.1202 -4.7640 1.6725 17 1 0.1326 -4.4600 2.6883 18 8 -1.0662 -3.8455 1.1217 19 6 -0.7273 -6.1682 1.6966 20 7 -1.9385 -6.1624 2.5208 21 6 -1.8492 -6.4424 3.9560 22 6 -3.1540 -5.8954 1.9496 23 1 -3.2151 -5.2467 1.0883 24 6 -4.3071 -6.4630 2.4742 25 7 -4.2379 -7.2202 3.5485 26 14 -5.9570 -6.1519 1.6554 27 1 -6.2063 -7.1977 0.6310 28 1 -7.0329 -6.1944 2.6781 29 1 -5.9436 -4.8164 1.0063 30 1 -0.3633 0.0718 1.0252 31 1 -0.3634 0.8518 -0.5748 32 1 -0.3633 -0.9238 -0.4503 33 1 3.8305 3.2363 -0.7617 34 1 6.1251 1.6152 0.6324 35 1 6.2866 3.2874 -0.1283 36 1 4.5431 4.1876 1.4792 37 1 4.3811 2.5157 2.2403 38 1 5.3151 0.0912 -0.0024 39 1 4.1661 -2.1102 0.0080 40 1 3.7723 -3.5170 1.5725 41 1 2.8198 -2.1220 2.1335 42 1 2.5302 -3.7348 2.8287 43 1 1.8306 -5.5339 1.1797 44 1 0.8799 -4.9875 -0.2224 45 1 -1.3370 -4.0547 0.2173 46 1 -0.0057 -6.8689 2.1167 47 1 -0.9800 -6.4722 0.6808 48 1 -1.8898 -7.5194 4.1192 49 1 -0.9091 -6.0512 4.3447 50 1 -2.6824 -5.9651 4.4719 51 1 -5.0436 -7.6171 3.9149 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725720416.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:49:28 Heat of formation + Delta-G solvation = -12.019202 kcal Electronic energy + Delta-G solvation = -31073.714423 eV Core-core repulsion = 26974.346451 eV Total energy + Delta-G solvation = -4099.367972 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.01583 -40.52789 -38.76037 -37.87355 -36.79462 -36.10405 -33.97461 -33.35613 -33.19595 -31.04271 -28.91248 -28.14743 -27.85305 -27.18493 -25.71772 -23.80363 -23.72492 -22.88687 -22.14351 -21.79067 -20.63761 -18.85466 -18.38800 -18.08097 -17.64065 -17.25431 -16.86924 -16.75462 -16.27850 -16.03152 -15.89033 -15.42604 -15.28270 -15.18241 -14.93177 -14.84179 -14.55583 -14.34650 -13.87588 -13.69906 -13.61796 -13.52328 -13.27733 -13.10276 -13.02303 -12.79641 -12.75526 -12.60561 -12.51617 -12.29839 -12.20532 -12.10523 -11.83164 -11.82769 -11.59542 -11.39140 -11.12259 -11.04101 -10.83012 -10.54489 -10.43510 -9.80277 -9.59005 -8.54037 -7.82368 -5.31664 -0.31002 0.16130 1.45003 1.45540 1.55035 1.59348 1.98941 2.51824 2.53809 2.80443 3.14531 3.34172 3.42404 3.59016 3.61531 3.70317 3.83933 3.94490 3.96390 4.08163 4.11866 4.19008 4.20681 4.27628 4.45257 4.51710 4.55416 4.57431 4.59090 4.62922 4.65566 4.77609 4.79959 4.86307 4.87188 4.87686 4.98937 5.00132 5.07780 5.12447 5.22715 5.26718 5.29182 5.40209 5.50728 5.57994 5.69134 5.74756 6.32119 6.43175 6.89063 6.99662 7.12082 7.22409 7.91295 8.36704 9.22630 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019360 B = 0.002300 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.937533 B =12173.577331 C =12789.093534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.167 3.833 3 N -0.508 5.508 4 C 0.169 3.831 5 C -0.134 4.134 6 C -0.147 4.147 7 C -0.164 4.164 8 C -0.173 4.173 9 C -0.029 4.029 10 C -0.197 4.197 11 C 0.565 3.435 12 O -0.557 6.557 13 N -0.600 5.600 14 C 0.071 3.929 15 C 0.094 3.906 16 C 0.081 3.919 17 H 0.075 0.925 18 O -0.561 6.561 19 C 0.122 3.878 20 N -0.613 5.613 21 C 0.178 3.822 22 C -0.240 4.240 23 H 0.066 0.934 24 C -0.057 4.057 25 N -0.942 5.942 26 Si 0.964 3.036 27 H -0.283 1.283 28 H -0.295 1.295 29 H -0.276 1.276 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.110 0.890 37 H 0.088 0.912 38 H 0.178 0.822 39 H 0.170 0.830 40 H 0.091 0.909 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.119 0.881 44 H 0.077 0.923 45 H 0.368 0.632 46 H 0.066 0.934 47 H 0.048 0.952 48 H -0.004 1.004 49 H 0.020 0.980 50 H 0.026 0.974 51 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.660 15.697 -5.511 32.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.029 3.971 3 N -0.217 5.217 4 C 0.031 3.969 5 C -0.153 4.153 6 C -0.184 4.184 7 C -0.202 4.202 8 C -0.192 4.192 9 C -0.055 4.055 10 C -0.203 4.203 11 C 0.353 3.647 12 O -0.436 6.436 13 N -0.331 5.331 14 C -0.071 4.071 15 C -0.030 4.030 16 C 0.018 3.982 17 H 0.093 0.907 18 O -0.365 6.365 19 C -0.005 4.005 20 N -0.335 5.335 21 C 0.033 3.967 22 C -0.370 4.370 23 H 0.083 0.917 24 C -0.251 4.251 25 N -0.590 5.590 26 Si 0.793 3.207 27 H -0.210 1.210 28 H -0.222 1.222 29 H -0.201 1.201 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.137 0.863 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.128 0.872 37 H 0.107 0.893 38 H 0.195 0.805 39 H 0.188 0.812 40 H 0.110 0.890 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.137 0.863 44 H 0.096 0.904 45 H 0.215 0.785 46 H 0.085 0.915 47 H 0.066 0.934 48 H 0.015 0.985 49 H 0.038 0.962 50 H 0.045 0.955 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 26.659 16.538 -5.226 31.805 hybrid contribution -1.355 -1.049 -0.574 1.807 sum 25.304 15.488 -5.800 30.230 Atomic orbital electron populations 1.20931 0.88902 1.04639 1.03141 1.21325 0.97056 0.87166 0.91578 1.67293 1.10808 1.28716 1.14927 1.21037 0.88500 0.95651 0.91667 1.20872 0.98453 0.94044 1.01917 1.23256 0.89409 1.04329 1.01439 1.23038 1.02985 1.01890 0.92254 1.22209 1.03209 0.91105 1.02722 1.22041 0.91443 1.00339 0.91673 1.20715 0.95990 0.93812 1.09762 1.18290 0.82178 0.83525 0.80674 1.90698 1.31256 1.80320 1.41308 1.47723 1.41550 1.12776 1.31099 1.22134 0.91712 1.02446 0.90823 1.22230 0.95040 0.84202 1.01482 1.22947 0.87694 0.91191 0.96336 0.90682 1.86526 1.63380 1.53038 1.33589 1.21541 0.88646 0.94920 0.95379 1.43916 1.03152 1.82299 1.04174 1.20535 0.95843 0.96359 0.83961 1.19415 0.85065 1.20807 1.11748 0.91670 1.25952 1.01835 0.98335 0.99023 1.70198 1.27566 1.37479 1.23707 0.85303 0.79964 0.77809 0.77599 1.21001 1.22183 1.20069 0.90823 0.90065 0.89705 0.86288 0.86747 0.86188 0.87151 0.89308 0.80488 0.81230 0.89036 0.91425 0.90128 0.86330 0.90447 0.78473 0.91540 0.93352 0.98539 0.96211 0.95511 0.94471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.50 9.86 71.23 0.70 -2.80 16 2 C 0.17 4.61 6.82 42.89 0.29 4.90 16 3 N -0.51 -13.10 10.17 -171.06 -1.74 -14.84 16 4 C 0.17 3.21 6.46 42.57 0.28 3.48 16 5 C -0.13 -1.82 6.21 -11.54 -0.07 -1.89 16 6 C -0.15 -0.98 9.79 30.59 0.30 -0.68 16 7 C -0.16 -1.73 10.23 30.59 0.31 -1.42 16 8 C -0.17 -2.37 9.34 22.32 0.21 -2.16 16 9 C -0.03 -0.46 8.10 22.73 0.18 -0.28 16 10 C -0.20 -4.79 4.67 -19.99 -0.09 -4.89 16 11 C 0.57 15.91 6.40 86.79 0.56 16.46 16 12 O -0.56 -19.74 13.05 8.71 0.11 -19.62 16 13 N -0.60 -13.76 2.86 -850.21 -2.43 -16.19 16 14 C 0.07 1.03 9.14 127.77 1.17 2.20 16 15 C 0.09 2.29 5.12 86.38 0.44 2.73 16 16 C 0.08 2.72 3.48 30.59 0.11 2.82 16 17 H 0.08 2.65 8.14 -2.38 -0.02 2.63 16 18 O -0.56 -22.89 10.96 -136.42 -1.50 -24.38 16 19 C 0.12 4.70 5.40 86.38 0.47 5.16 16 20 N -0.61 -31.07 2.87 -726.95 -2.09 -33.15 16 21 C 0.18 9.01 8.98 127.77 1.15 10.16 16 22 C -0.24 -13.54 9.09 84.03 0.76 -12.78 16 23 H 0.07 3.66 7.31 -2.91 -0.02 3.64 16 24 C -0.06 -3.34 5.31 84.86 0.45 -2.89 16 25 N -0.94 -57.29 10.50 21.65 0.23 -57.06 16 26 Si 0.96 47.35 29.55 68.60 2.03 49.38 16 27 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 28 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 29 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 30 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.08 2.87 5.36 -2.38 -0.01 2.86 16 33 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.11 0.43 6.38 -2.39 -0.02 0.42 16 35 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.18 1.04 6.23 -2.91 -0.02 1.02 16 39 H 0.17 1.58 7.02 -2.91 -0.02 1.56 16 40 H 0.09 0.71 7.52 -2.39 -0.02 0.70 16 41 H 0.07 1.04 6.31 -2.39 -0.02 1.03 16 42 H 0.08 1.12 8.10 -2.38 -0.02 1.10 16 43 H 0.12 2.05 8.07 -2.38 -0.02 2.03 16 44 H 0.08 2.06 7.50 -2.39 -0.02 2.04 16 45 H 0.37 14.66 8.60 -74.06 -0.64 14.02 16 46 H 0.07 2.22 8.07 -2.38 -0.02 2.20 16 47 H 0.05 1.88 8.04 -2.39 -0.02 1.86 16 48 H 0.00 -0.20 7.80 -2.39 -0.02 -0.22 16 49 H 0.02 0.84 8.10 -2.39 -0.02 0.82 16 50 H 0.03 1.50 6.79 -2.39 -0.02 1.49 16 51 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -77.69 408.20 2.14 -75.55 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: 0.31 Total: 22.19 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: 7.21 Total: 18.13 kcal Atomic # 7 Polarization: -115.22 SS G_CDS: -6.03 Total: -121.24 kcal Atomic # 8 Polarization: -42.62 SS G_CDS: -1.38 Total: -44.01 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.38 kcal Total: -77.69 2.14 -75.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725720416.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.532 kcal (2) G-P(sol) polarization free energy of solvation -77.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds