Wall clock time and date at job start Wed Apr 1 2020 05:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42906 * 113.99751 * 2 1 4 4 C 1.52996 * 109.47200 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47313 * 64.99975 * 4 3 2 6 6 C 1.36932 * 119.99929 * 270.00308 * 5 4 3 7 7 H 1.08002 * 120.00074 * 140.22370 * 6 5 4 8 8 C 1.38816 * 120.00068 * 320.22616 * 6 5 4 9 9 N 1.31623 * 119.99504 * 336.77111 * 8 6 5 10 10 Si 1.86795 * 120.00342 * 156.77471 * 8 6 5 11 11 H 1.48503 * 109.47131 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47522 * 119.99551 * 10 8 6 13 13 H 1.48507 * 109.46847 * 239.99886 * 10 8 6 14 14 C 1.46504 * 120.00007 * 89.99661 * 5 4 3 15 15 C 1.53004 * 109.46896 * 264.64724 * 14 5 4 16 16 N 1.46499 * 109.46580 * 180.02562 * 15 14 5 17 17 C 1.34778 * 120.00027 * 180.02562 * 16 15 14 18 18 O 1.21560 * 119.99906 * 359.97438 * 17 16 15 19 19 C 1.47839 * 120.00506 * 179.97438 * 17 16 15 20 20 C 1.40021 * 120.55645 * 354.25825 * 19 17 16 21 21 C 1.38355 * 118.28964 * 179.97438 * 20 19 17 22 22 C 1.38354 * 119.30096 * 359.97438 * 21 20 19 23 23 C 1.50705 * 119.45683 * 180.02562 * 22 21 20 24 24 N 1.31918 * 121.08054 * 0.02562 * 22 21 20 25 25 C 1.31688 * 121.88163 * 359.97438 * 24 22 21 26 26 C 1.50702 * 119.71981 * 180.27939 * 25 24 22 27 27 C 1.53001 * 117.49691 * 357.85064 * 26 25 24 28 28 C 1.52998 * 60.00075 * 252.51039 * 27 26 25 29 29 H 1.08997 * 109.47553 * 299.99826 * 1 2 3 30 30 H 1.09000 * 109.47158 * 60.00632 * 1 2 3 31 31 H 1.09004 * 109.46752 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47176 * 59.99695 * 3 2 1 33 33 H 1.09000 * 109.46884 * 300.00045 * 3 2 1 34 34 H 1.08996 * 109.47547 * 305.00227 * 4 3 2 35 35 H 1.08999 * 109.47275 * 184.99568 * 4 3 2 36 36 H 0.96996 * 119.99575 * 180.02562 * 9 8 6 37 37 H 1.08995 * 109.46595 * 144.64802 * 14 5 4 38 38 H 1.09003 * 109.46887 * 24.64676 * 14 5 4 39 39 H 1.09003 * 109.47292 * 60.00353 * 15 14 5 40 40 H 1.08993 * 109.47303 * 299.99656 * 15 14 5 41 41 H 0.96999 * 120.00434 * 0.02562 * 16 15 14 42 42 H 1.08003 * 120.85653 * 359.97438 * 20 19 17 43 43 H 1.08004 * 120.34995 * 180.02562 * 21 20 19 44 44 H 1.09004 * 109.46933 * 90.00402 * 23 22 21 45 45 H 1.09004 * 109.47042 * 210.00154 * 23 22 21 46 46 H 1.09000 * 109.47653 * 330.00231 * 23 22 21 47 47 H 1.09004 * 115.55203 * 143.55936 * 26 25 24 48 48 H 1.08998 * 117.49728 * 359.97438 * 27 26 25 49 49 H 1.08996 * 117.49727 * 145.01762 * 27 26 25 50 50 H 1.09004 * 117.50138 * 252.50860 * 28 27 26 51 51 H 1.09004 * 117.52068 * 107.48194 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9767 0.5641 -1.2509 6 6 4.0979 -0.7973 -1.3344 7 1 3.7900 -1.3127 -2.2322 8 6 4.6164 -1.5149 -0.2653 9 7 5.3950 -0.9179 0.6121 10 14 4.2093 -3.3276 -0.0718 11 1 3.3208 -3.7566 -1.1816 12 1 5.4629 -4.1228 -0.1051 13 1 3.5200 -3.5443 1.2256 14 6 4.2882 1.4000 -2.4131 15 6 3.0613 1.4857 -3.3232 16 7 3.3731 2.3211 -4.4856 17 6 2.4358 2.5399 -5.4290 18 8 1.3319 2.0437 -5.3157 19 6 2.7502 3.3833 -6.6018 20 6 3.9746 4.0573 -6.6863 21 6 4.2201 4.8334 -7.8050 22 6 3.2575 4.9176 -8.7952 23 6 3.5214 5.7615 -10.0156 24 7 2.1125 4.2712 -8.6886 25 6 1.8323 3.5203 -7.6437 26 6 0.5114 2.7982 -7.5751 27 6 -0.4750 3.0193 -8.7237 28 6 -0.7448 3.6429 -7.3528 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6885 1.8464 0.8899 33 1 1.6885 1.8464 -0.8900 34 1 3.8508 0.5687 0.8426 35 1 3.9783 2.1767 0.0901 36 1 5.7576 -1.4194 1.3590 37 1 5.1195 0.9604 -2.9643 38 1 4.5628 2.4003 -2.0780 39 1 2.2300 1.9253 -2.7719 40 1 2.7868 0.4856 -3.6582 41 1 4.2541 2.7167 -4.5763 42 1 4.7085 3.9735 -5.8984 43 1 5.1536 5.3673 -7.9047 44 1 3.9999 5.1520 -10.7823 45 1 2.5784 6.1521 -10.3981 46 1 4.1768 6.5907 -9.7492 47 1 0.5396 1.8086 -7.1191 48 1 -0.1686 3.6875 -9.5285 49 1 -1.0958 2.1751 -9.0235 50 1 -1.5432 3.2089 -6.7507 51 1 -0.6158 4.7209 -7.2556 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725758442.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:49:48 Heat of formation + Delta-G solvation = 5.225813 kcal Electronic energy + Delta-G solvation = -30714.055696 eV Core-core repulsion = 26615.435524 eV Total energy + Delta-G solvation = -4098.620172 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.00174 -38.99078 -37.29795 -37.02987 -35.74849 -34.27013 -33.27128 -32.23994 -31.38017 -29.56330 -28.46278 -27.27677 -25.63454 -24.86544 -23.84915 -23.13962 -22.30105 -21.79612 -20.92334 -20.57659 -20.16380 -17.75285 -16.86139 -16.72243 -16.30948 -15.79314 -15.48983 -15.22242 -15.03380 -14.92449 -14.65206 -14.58385 -14.35761 -14.11707 -13.95380 -13.66250 -13.25482 -13.21334 -12.88580 -12.73087 -12.50889 -12.48586 -11.97955 -11.88103 -11.80838 -11.50633 -11.20351 -10.90125 -10.79769 -10.79357 -10.68842 -10.59804 -10.49194 -10.08672 -9.99442 -9.97093 -9.95428 -9.73487 -9.35560 -9.01279 -8.83783 -8.61247 -8.38751 -6.58065 -5.76760 -3.33160 0.47850 0.94723 2.86713 3.28492 3.43896 3.52127 3.54706 3.57702 3.83653 4.02392 4.33440 4.40902 4.54955 4.61446 4.69442 4.78956 4.99499 5.02364 5.06881 5.16533 5.23780 5.25116 5.34667 5.44058 5.52660 5.62419 5.66324 5.73686 5.76773 5.78908 5.82610 5.85327 5.88733 5.91521 6.07120 6.15156 6.15922 6.23470 6.27624 6.29593 6.40188 6.53820 6.63279 6.65762 6.69436 6.93713 7.54898 7.64249 7.75203 7.89474 8.07560 8.36156 8.57320 9.19609 9.82690 10.38528 11.25938 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013957 B = 0.002500 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.645009 B =11196.881519 C =12031.329265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.355 6.355 3 C 0.044 3.956 4 C 0.148 3.852 5 N -0.569 5.569 6 C -0.248 4.248 7 H 0.056 0.944 8 C 0.024 3.976 9 N -0.889 5.889 10 Si 0.897 3.103 11 H -0.276 1.276 12 H -0.294 1.294 13 H -0.288 1.288 14 C 0.138 3.862 15 C 0.097 3.903 16 N -0.718 5.718 17 C 0.556 3.444 18 O -0.527 6.527 19 C -0.184 4.184 20 C -0.038 4.038 21 C -0.187 4.187 22 C 0.150 3.850 23 C -0.106 4.106 24 N -0.488 5.488 25 C 0.222 3.778 26 C -0.110 4.110 27 C -0.169 4.169 28 C -0.152 4.152 29 H 0.026 0.974 30 H 0.030 0.970 31 H 0.074 0.926 32 H 0.024 0.976 33 H 0.030 0.970 34 H 0.096 0.904 35 H 0.042 0.958 36 H 0.253 0.747 37 H 0.052 0.948 38 H 0.039 0.961 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.394 0.606 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.144 0.856 48 H 0.103 0.897 49 H 0.094 0.906 50 H 0.099 0.901 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.266 14.479 -15.781 21.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C -0.036 4.036 4 C 0.021 3.979 5 N -0.289 5.289 6 C -0.378 4.378 7 H 0.074 0.926 8 C -0.176 4.176 9 N -0.531 5.531 10 Si 0.727 3.273 11 H -0.201 1.201 12 H -0.221 1.221 13 H -0.214 1.214 14 C 0.010 3.990 15 C -0.028 4.028 16 N -0.369 5.369 17 C 0.342 3.658 18 O -0.406 6.406 19 C -0.190 4.190 20 C -0.064 4.064 21 C -0.207 4.207 22 C 0.012 3.988 23 C -0.163 4.163 24 N -0.197 5.197 25 C 0.084 3.916 26 C -0.129 4.129 27 C -0.206 4.206 28 C -0.189 4.189 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.093 0.907 32 H 0.042 0.958 33 H 0.048 0.952 34 H 0.114 0.886 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.228 0.772 42 H 0.159 0.841 43 H 0.158 0.842 44 H 0.100 0.900 45 H 0.097 0.903 46 H 0.096 0.904 47 H 0.161 0.839 48 H 0.122 0.878 49 H 0.112 0.888 50 H 0.117 0.883 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.422 13.936 -16.162 22.018 hybrid contribution 0.631 -0.515 0.963 1.261 sum -4.791 13.421 -15.199 20.834 Atomic orbital electron populations 1.22640 0.84111 1.01544 0.98492 1.88202 1.16668 1.27526 1.94836 1.23494 0.98729 0.84306 0.97025 1.20997 0.87609 0.96529 0.92760 1.43503 1.75521 1.02892 1.06998 1.18814 1.35608 0.81241 1.02114 0.92588 1.25082 0.95557 0.97796 0.99197 1.70057 1.30900 1.36402 1.15721 0.86340 0.77569 0.85387 0.78021 1.20063 1.22115 1.21413 1.21001 0.93229 0.94739 0.90007 1.22491 1.01165 0.94123 0.85037 1.46045 1.15218 1.52097 1.23526 1.17965 0.84922 0.80731 0.82185 1.90732 1.21968 1.50898 1.76959 1.20820 0.96647 1.03404 0.98108 1.21791 0.94968 0.92354 0.97254 1.21880 1.01333 1.02411 0.95097 1.21484 0.88832 0.93116 0.95380 1.20771 1.03223 0.98258 0.94067 1.67313 1.20108 1.08330 1.23989 1.20509 0.93829 0.90087 0.87175 1.21245 0.85824 1.01483 1.04316 1.22988 1.01932 1.03416 0.92273 1.22820 0.97785 0.98730 0.99595 0.95556 0.95123 0.90693 0.95752 0.95168 0.88590 0.93982 0.93743 0.92945 0.94227 0.92179 0.91331 0.77189 0.84133 0.84191 0.90037 0.90291 0.90447 0.83867 0.87814 0.88765 0.88277 0.89350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.35 -7.89 10.18 -35.23 -0.36 -8.24 16 3 C 0.04 0.88 6.28 37.16 0.23 1.11 16 4 C 0.15 3.33 5.77 -4.04 -0.02 3.30 16 5 N -0.57 -13.48 2.39 -173.23 -0.41 -13.90 16 6 C -0.25 -6.67 8.91 -15.06 -0.13 -6.80 16 7 H 0.06 1.55 7.93 -52.49 -0.42 1.13 16 8 C 0.02 0.66 4.88 -17.43 -0.09 0.58 16 9 N -0.89 -25.27 11.76 55.49 0.65 -24.62 16 10 Si 0.90 22.22 29.61 -169.99 -5.03 17.18 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 14 C 0.14 2.65 5.83 -4.04 -0.02 2.63 16 15 C 0.10 1.75 5.97 -4.04 -0.02 1.72 16 16 N -0.72 -10.39 5.51 -61.25 -0.34 -10.73 16 17 C 0.56 8.64 7.74 -12.33 -0.10 8.54 16 18 O -0.53 -9.77 13.43 5.31 0.07 -9.70 16 19 C -0.18 -2.43 5.89 -104.82 -0.62 -3.04 16 20 C -0.04 -0.37 9.63 -38.87 -0.37 -0.75 16 21 C -0.19 -1.63 9.72 -39.50 -0.38 -2.01 16 22 C 0.15 1.47 6.78 -82.51 -0.56 0.91 16 23 C -0.11 -0.67 10.16 36.01 0.37 -0.30 16 24 N -0.49 -6.00 9.19 -5.42 -0.05 -6.05 16 25 C 0.22 3.02 6.50 -82.17 -0.53 2.48 16 26 C -0.11 -1.49 4.60 -91.77 -0.42 -1.91 16 27 C -0.17 -1.89 10.02 -26.73 -0.27 -2.15 16 28 C -0.15 -1.81 10.23 -26.73 -0.27 -2.08 16 29 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.03 0.59 6.48 -51.93 -0.34 0.25 16 34 H 0.10 2.51 5.76 -51.93 -0.30 2.21 16 35 H 0.04 0.86 7.86 -51.93 -0.41 0.45 16 36 H 0.25 6.96 8.31 -40.82 -0.34 6.63 16 37 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 38 H 0.04 0.68 7.83 -51.93 -0.41 0.27 16 39 H 0.06 1.16 6.48 -51.93 -0.34 0.82 16 40 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 41 H 0.39 4.47 6.61 -40.82 -0.27 4.20 16 42 H 0.14 1.04 6.56 -52.48 -0.34 0.69 16 43 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 44 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.08 0.33 8.07 -51.93 -0.42 -0.09 16 47 H 0.14 2.20 6.15 -51.93 -0.32 1.88 16 48 H 0.10 1.15 7.54 -51.93 -0.39 0.76 16 49 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 50 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 51 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 416.49 15.07 6.28 6.28 Total: -1.00 -32.56 416.49 -9.45 -42.01 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -8.15 Total: 3.90 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -2.11 Total: 3.86 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: -0.15 Total: -55.29 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.29 Total: -17.94 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.03 Total: 17.18 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -32.56 -9.45 -42.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725758442.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.236 kcal (2) G-P(sol) polarization free energy of solvation -32.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds