Wall clock time and date at job start Wed Apr 1 2020 05:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42906 * 113.99751 * 2 1 4 4 C 1.52996 * 109.47200 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47313 * 64.99975 * 4 3 2 6 6 C 1.36932 * 119.99929 * 270.00308 * 5 4 3 7 7 H 1.08002 * 120.00074 * 140.22370 * 6 5 4 8 8 C 1.38816 * 120.00068 * 320.22616 * 6 5 4 9 9 N 1.31623 * 119.99504 * 336.77111 * 8 6 5 10 10 Si 1.86795 * 120.00342 * 156.77471 * 8 6 5 11 11 H 1.48503 * 109.47131 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47522 * 119.99551 * 10 8 6 13 13 H 1.48507 * 109.46847 * 239.99886 * 10 8 6 14 14 C 1.46504 * 120.00007 * 89.99661 * 5 4 3 15 15 C 1.53004 * 109.46896 * 264.64724 * 14 5 4 16 16 N 1.46499 * 109.46580 * 180.02562 * 15 14 5 17 17 C 1.34778 * 120.00027 * 180.02562 * 16 15 14 18 18 O 1.21560 * 119.99906 * 359.97438 * 17 16 15 19 19 C 1.47839 * 120.00506 * 179.97438 * 17 16 15 20 20 C 1.40021 * 120.55645 * 354.25825 * 19 17 16 21 21 C 1.38355 * 118.28964 * 179.97438 * 20 19 17 22 22 C 1.38354 * 119.30096 * 359.97438 * 21 20 19 23 23 C 1.50705 * 119.45683 * 180.02562 * 22 21 20 24 24 N 1.31918 * 121.08054 * 0.02562 * 22 21 20 25 25 C 1.31688 * 121.88163 * 359.97438 * 24 22 21 26 26 C 1.50702 * 119.71981 * 180.27939 * 25 24 22 27 27 C 1.53001 * 117.49691 * 357.85064 * 26 25 24 28 28 C 1.52998 * 60.00075 * 252.51039 * 27 26 25 29 29 H 1.08997 * 109.47553 * 299.99826 * 1 2 3 30 30 H 1.09000 * 109.47158 * 60.00632 * 1 2 3 31 31 H 1.09004 * 109.46752 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47176 * 59.99695 * 3 2 1 33 33 H 1.09000 * 109.46884 * 300.00045 * 3 2 1 34 34 H 1.08996 * 109.47547 * 305.00227 * 4 3 2 35 35 H 1.08999 * 109.47275 * 184.99568 * 4 3 2 36 36 H 0.96996 * 119.99575 * 180.02562 * 9 8 6 37 37 H 1.08995 * 109.46595 * 144.64802 * 14 5 4 38 38 H 1.09003 * 109.46887 * 24.64676 * 14 5 4 39 39 H 1.09003 * 109.47292 * 60.00353 * 15 14 5 40 40 H 1.08993 * 109.47303 * 299.99656 * 15 14 5 41 41 H 0.96999 * 120.00434 * 0.02562 * 16 15 14 42 42 H 1.08003 * 120.85653 * 359.97438 * 20 19 17 43 43 H 1.08004 * 120.34995 * 180.02562 * 21 20 19 44 44 H 1.09004 * 109.46933 * 90.00402 * 23 22 21 45 45 H 1.09004 * 109.47042 * 210.00154 * 23 22 21 46 46 H 1.09000 * 109.47653 * 330.00231 * 23 22 21 47 47 H 1.09004 * 115.55203 * 143.55936 * 26 25 24 48 48 H 1.08998 * 117.49728 * 359.97438 * 27 26 25 49 49 H 1.08996 * 117.49727 * 145.01762 * 27 26 25 50 50 H 1.09004 * 117.50138 * 252.50860 * 28 27 26 51 51 H 1.09004 * 117.52068 * 107.48194 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9767 0.5641 -1.2509 6 6 4.0979 -0.7973 -1.3344 7 1 3.7900 -1.3127 -2.2322 8 6 4.6164 -1.5149 -0.2653 9 7 5.3950 -0.9179 0.6121 10 14 4.2093 -3.3276 -0.0718 11 1 3.3208 -3.7566 -1.1816 12 1 5.4629 -4.1228 -0.1051 13 1 3.5200 -3.5443 1.2256 14 6 4.2882 1.4000 -2.4131 15 6 3.0613 1.4857 -3.3232 16 7 3.3731 2.3211 -4.4856 17 6 2.4358 2.5399 -5.4290 18 8 1.3319 2.0437 -5.3157 19 6 2.7502 3.3833 -6.6018 20 6 3.9746 4.0573 -6.6863 21 6 4.2201 4.8334 -7.8050 22 6 3.2575 4.9176 -8.7952 23 6 3.5214 5.7615 -10.0156 24 7 2.1125 4.2712 -8.6886 25 6 1.8323 3.5203 -7.6437 26 6 0.5114 2.7982 -7.5751 27 6 -0.4750 3.0193 -8.7237 28 6 -0.7448 3.6429 -7.3528 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6885 1.8464 0.8899 33 1 1.6885 1.8464 -0.8900 34 1 3.8508 0.5687 0.8426 35 1 3.9783 2.1767 0.0901 36 1 5.7576 -1.4194 1.3590 37 1 5.1195 0.9604 -2.9643 38 1 4.5628 2.4003 -2.0780 39 1 2.2300 1.9253 -2.7719 40 1 2.7868 0.4856 -3.6582 41 1 4.2541 2.7167 -4.5763 42 1 4.7085 3.9735 -5.8984 43 1 5.1536 5.3673 -7.9047 44 1 3.9999 5.1520 -10.7823 45 1 2.5784 6.1521 -10.3981 46 1 4.1768 6.5907 -9.7492 47 1 0.5396 1.8086 -7.1191 48 1 -0.1686 3.6875 -9.5285 49 1 -1.0958 2.1751 -9.0235 50 1 -1.5432 3.2089 -6.7507 51 1 -0.6158 4.7209 -7.2556 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725758442.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:49:47 Heat of formation + Delta-G solvation = -15.133438 kcal Electronic energy + Delta-G solvation = -30714.938539 eV Core-core repulsion = 26615.435524 eV Total energy + Delta-G solvation = -4099.503015 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.92343 -40.15687 -38.92018 -37.97858 -37.37116 -35.72755 -34.21092 -33.29793 -32.99527 -31.08125 -29.53269 -28.64375 -27.16797 -26.12190 -25.29208 -24.03668 -23.39859 -23.11665 -22.24906 -21.74345 -21.53832 -18.96088 -18.52713 -17.82939 -17.36427 -17.21700 -16.79307 -16.71954 -16.36164 -16.31475 -15.91058 -15.68543 -15.56392 -15.35005 -15.24620 -15.02594 -14.89849 -14.27753 -14.05782 -13.64089 -13.56760 -13.45325 -13.32980 -13.02233 -13.01440 -12.83305 -12.74352 -12.45644 -12.41441 -12.39541 -12.35038 -11.95097 -11.74307 -11.66462 -11.54815 -11.47393 -10.96663 -10.85196 -10.49425 -10.38805 -10.34837 -10.10547 -9.69928 -8.54090 -7.81195 -5.40310 -0.39795 0.16114 1.43796 1.49132 1.58078 1.80865 2.07066 2.56652 2.61709 3.00112 3.12338 3.17457 3.31835 3.50247 3.66615 3.70164 3.79610 3.97645 4.09416 4.16390 4.22396 4.22937 4.28047 4.38313 4.42923 4.50421 4.56434 4.63838 4.69020 4.71714 4.72157 4.73261 4.80725 4.81420 4.87899 4.94389 4.95531 4.97648 5.08241 5.11018 5.15856 5.19157 5.25516 5.33792 5.48690 5.64148 5.69297 5.76085 6.45939 6.51439 6.63256 6.90006 7.18550 7.22659 7.87854 8.38953 9.16716 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013957 B = 0.002500 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.645009 B =11196.881519 C =12031.329265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.396 6.396 3 C 0.051 3.949 4 C 0.146 3.854 5 N -0.585 5.585 6 C -0.245 4.245 7 H 0.040 0.960 8 C -0.018 4.018 9 N -0.912 5.912 10 Si 0.943 3.057 11 H -0.278 1.278 12 H -0.290 1.290 13 H -0.292 1.292 14 C 0.143 3.857 15 C 0.121 3.879 16 N -0.706 5.706 17 C 0.555 3.445 18 O -0.565 6.565 19 C -0.208 4.208 20 C -0.034 4.034 21 C -0.178 4.178 22 C 0.143 3.857 23 C -0.104 4.104 24 N -0.505 5.505 25 C 0.205 3.795 26 C -0.130 4.130 27 C -0.151 4.151 28 C -0.151 4.151 29 H 0.050 0.950 30 H 0.035 0.965 31 H 0.082 0.918 32 H 0.049 0.951 33 H 0.036 0.964 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.250 0.750 37 H 0.049 0.951 38 H 0.068 0.932 39 H 0.048 0.952 40 H 0.033 0.967 41 H 0.412 0.588 42 H 0.168 0.832 43 H 0.181 0.819 44 H 0.093 0.907 45 H 0.074 0.926 46 H 0.104 0.896 47 H 0.117 0.883 48 H 0.107 0.893 49 H 0.106 0.894 50 H 0.099 0.901 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.436 16.798 -17.198 24.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C -0.028 4.028 4 C 0.020 3.980 5 N -0.306 5.306 6 C -0.376 4.376 7 H 0.057 0.943 8 C -0.216 4.216 9 N -0.556 5.556 10 Si 0.773 3.227 11 H -0.203 1.203 12 H -0.217 1.217 13 H -0.219 1.219 14 C 0.016 3.984 15 C -0.005 4.005 16 N -0.359 5.359 17 C 0.342 3.658 18 O -0.446 6.446 19 C -0.213 4.213 20 C -0.059 4.059 21 C -0.197 4.197 22 C 0.005 3.995 23 C -0.161 4.161 24 N -0.215 5.215 25 C 0.067 3.933 26 C -0.149 4.149 27 C -0.188 4.188 28 C -0.188 4.188 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.051 0.949 41 H 0.249 0.751 42 H 0.185 0.815 43 H 0.198 0.802 44 H 0.111 0.889 45 H 0.093 0.907 46 H 0.123 0.877 47 H 0.134 0.866 48 H 0.125 0.875 49 H 0.124 0.876 50 H 0.118 0.882 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.577 16.283 -17.604 24.413 hybrid contribution 0.359 -1.141 1.290 1.760 sum -4.219 15.142 -16.313 22.654 Atomic orbital electron populations 1.22800 0.81750 1.02601 0.99841 1.88126 1.19413 1.28803 1.95167 1.23354 0.97030 0.84000 0.98404 1.20960 0.89399 0.96598 0.91040 1.43651 1.76030 1.02416 1.08480 1.18813 1.34277 0.83088 1.01378 0.94282 1.25555 0.96113 1.00412 0.99470 1.70127 1.32073 1.37223 1.16185 0.85617 0.77239 0.82529 0.77350 1.20280 1.21669 1.21913 1.21031 0.93309 0.95359 0.88679 1.21915 1.00096 0.92780 0.85703 1.45773 1.16108 1.51578 1.22410 1.18403 0.84311 0.80375 0.82680 1.90717 1.23609 1.52430 1.77841 1.20646 0.98541 1.04890 0.97266 1.22131 0.93964 0.91373 0.98475 1.22320 1.02337 1.01356 0.93682 1.22221 0.88154 0.92326 0.96756 1.20893 1.03775 0.98618 0.92778 1.67343 1.21671 1.08920 1.23573 1.20517 0.93890 0.90907 0.87976 1.21123 0.87064 1.00762 1.05949 1.23009 1.00638 1.03444 0.91680 1.22828 0.97140 0.98584 1.00273 0.93192 0.94616 0.89930 0.93288 0.94563 0.92187 0.91851 0.94073 0.93248 0.91340 0.93360 0.94857 0.75089 0.81483 0.80212 0.88868 0.90667 0.87712 0.86561 0.87498 0.87568 0.88218 0.89263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 11.01 113.37 1.25 2.15 16 2 O -0.40 -17.59 10.18 -148.98 -1.52 -19.10 16 3 C 0.05 2.01 6.28 71.98 0.45 2.46 16 4 C 0.15 6.55 5.77 86.38 0.50 7.05 16 5 N -0.59 -27.79 2.39 -701.99 -1.68 -29.47 16 6 C -0.25 -13.39 8.91 84.04 0.75 -12.64 16 7 H 0.04 2.24 7.93 -2.91 -0.02 2.21 16 8 C -0.02 -0.99 4.88 84.86 0.41 -0.57 16 9 N -0.91 -52.59 11.76 21.65 0.25 -52.34 16 10 Si 0.94 46.44 29.61 68.60 2.03 48.47 16 11 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 12 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 13 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 14 C 0.14 5.39 5.83 86.38 0.50 5.89 16 15 C 0.12 4.40 5.97 86.38 0.52 4.91 16 16 N -0.71 -20.03 5.51 -465.97 -2.57 -22.59 16 17 C 0.55 17.44 7.74 86.78 0.67 18.11 16 18 O -0.57 -21.93 13.43 -3.91 -0.05 -21.98 16 19 C -0.21 -5.35 5.89 -19.99 -0.12 -5.47 16 20 C -0.03 -0.58 9.63 22.73 0.22 -0.36 16 21 C -0.18 -2.41 9.72 22.33 0.22 -2.19 16 22 C 0.14 2.42 6.78 42.57 0.29 2.70 16 23 C -0.10 -0.94 10.16 71.24 0.72 -0.22 16 24 N -0.50 -11.83 9.19 -171.06 -1.57 -13.40 16 25 C 0.21 5.55 6.50 42.89 0.28 5.83 16 26 C -0.13 -3.66 4.60 -11.54 -0.05 -3.71 16 27 C -0.15 -3.36 10.02 30.59 0.31 -3.06 16 28 C -0.15 -3.67 10.23 30.59 0.31 -3.35 16 29 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.04 1.38 6.48 -2.39 -0.02 1.37 16 34 H 0.06 3.17 5.76 -2.39 -0.01 3.16 16 35 H 0.06 2.50 7.86 -2.39 -0.02 2.48 16 36 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 37 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 38 H 0.07 2.20 7.83 -2.39 -0.02 2.18 16 39 H 0.05 1.87 6.48 -2.39 -0.02 1.86 16 40 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.41 8.54 6.61 -92.71 -0.61 7.93 16 42 H 0.17 1.84 6.56 -2.91 -0.02 1.82 16 43 H 0.18 0.98 8.06 -2.91 -0.02 0.96 16 44 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 45 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 46 H 0.10 0.40 8.07 -2.39 -0.02 0.38 16 47 H 0.12 3.87 6.15 -2.39 -0.01 3.86 16 48 H 0.11 2.31 7.54 -2.39 -0.02 2.29 16 49 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 50 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16 51 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 Total: -1.00 -73.59 416.49 2.45 -71.14 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 0.32 Total: 21.75 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 7.23 Total: 17.53 kcal Atomic # 7 Polarization: -112.24 SS G_CDS: -5.57 Total: -117.80 kcal Atomic # 8 Polarization: -39.52 SS G_CDS: -1.57 Total: -41.09 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -73.59 2.45 -71.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725758442.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.004 kcal (2) G-P(sol) polarization free energy of solvation -73.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds