Wall clock time and date at job start Wed Apr 1 2020 04:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38255 * 120.00544 * 2 1 4 4 C 1.38219 * 120.00134 * 180.02562 * 3 2 1 5 5 C 1.38254 * 119.99926 * 0.02562 * 4 3 2 6 6 C 1.38207 * 120.00146 * 359.97438 * 5 4 3 7 7 C 1.50706 * 120.00414 * 179.97438 * 6 5 4 8 8 H 1.08994 * 109.47173 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.46741 * 59.99904 * 7 6 5 10 10 C 1.50699 * 109.46849 * 300.00295 * 7 6 5 11 11 O 1.21286 * 120.00269 * 359.97438 * 10 7 6 12 12 N 1.34775 * 120.00099 * 179.97438 * 10 7 6 13 13 C 1.46493 * 120.00236 * 179.97438 * 12 10 7 14 14 C 1.53006 * 109.47189 * 180.02562 * 13 12 10 15 15 H 1.08993 * 109.46955 * 65.00107 * 14 13 12 16 16 C 1.52997 * 109.47127 * 185.00095 * 14 13 12 17 17 N 1.46902 * 109.46626 * 304.99760 * 14 13 12 18 18 C 1.46907 * 110.99670 * 155.00338 * 17 14 13 19 19 C 1.50700 * 109.46887 * 180.02562 * 18 17 14 20 20 O 1.21295 * 120.00159 * 359.97438 * 19 18 17 21 21 N 1.34780 * 119.99561 * 179.97438 * 19 18 17 22 22 C 1.37099 * 119.99515 * 180.02562 * 21 19 18 23 23 H 1.07995 * 120.00474 * 359.97438 * 22 21 19 24 24 C 1.38955 * 119.99632 * 180.02562 * 22 21 19 25 25 N 1.31412 * 120.00103 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99786 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47268 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47005 * 120.00128 * 26 24 22 29 29 H 1.48503 * 109.46537 * 239.99993 * 26 24 22 30 30 C 1.38223 * 119.99680 * 180.27102 * 2 1 3 31 31 H 1.09003 * 109.46787 * 89.99881 * 1 2 3 32 32 H 1.08997 * 109.47546 * 210.00201 * 1 2 3 33 33 H 1.09007 * 109.46838 * 330.00506 * 1 2 3 34 34 H 1.08001 * 119.99471 * 359.97438 * 3 2 1 35 35 H 1.07993 * 119.99846 * 179.97438 * 4 3 2 36 36 H 1.08002 * 119.99993 * 179.97438 * 5 4 3 37 37 H 1.09002 * 109.46911 * 180.02562 * 9 7 6 38 38 H 1.09010 * 109.47158 * 300.00176 * 9 7 6 39 39 H 1.09001 * 109.47357 * 59.99936 * 9 7 6 40 40 H 0.97005 * 119.99768 * 0.02562 * 12 10 7 41 41 H 1.08997 * 109.47341 * 59.99745 * 13 12 10 42 42 H 1.09004 * 109.47562 * 299.99900 * 13 12 10 43 43 H 1.09004 * 109.47261 * 59.99697 * 16 14 13 44 44 H 1.09002 * 109.47153 * 179.97438 * 16 14 13 45 45 H 1.09001 * 109.47289 * 299.99953 * 16 14 13 46 46 H 1.00902 * 110.99990 * 278.94758 * 17 14 13 47 47 H 1.09000 * 109.46588 * 299.99934 * 18 17 14 48 48 H 1.08994 * 109.47385 * 59.99624 * 18 17 14 49 49 H 0.97000 * 120.00246 * 359.97438 * 21 19 18 50 50 H 0.96993 * 119.99943 * 180.02562 * 25 24 22 51 51 H 1.07993 * 119.99936 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5806 1.1972 -0.0005 5 6 4.2717 -0.0002 -0.0016 6 6 3.5806 -1.1971 -0.0016 7 6 4.3340 -2.5023 -0.0034 8 1 3.6256 -3.3307 -0.0026 9 6 5.2150 -2.5842 1.2448 10 6 5.1990 -2.5814 -1.2349 11 8 5.2029 -1.6680 -2.0328 12 7 5.9682 -3.6670 -1.4496 13 6 6.8086 -3.7441 -2.6470 14 6 7.5736 -5.0692 -2.6487 15 1 6.8685 -5.8956 -2.7376 16 6 8.5433 -5.0967 -3.8318 17 7 8.3272 -5.2011 -1.3947 18 6 8.5765 -6.6134 -1.0764 19 6 9.3494 -6.7087 0.2138 20 8 9.6622 -5.6994 0.8094 21 7 9.6929 -7.9155 0.7059 22 6 10.3956 -8.0022 1.8800 23 1 10.6742 -7.1036 2.4102 24 6 10.7503 -9.2463 2.3870 25 7 10.4118 -10.3398 1.7416 26 14 11.7083 -9.3645 3.9863 27 1 11.9646 -7.9994 4.5118 28 1 10.9204 -10.1379 4.9793 29 1 13.0022 -10.0501 3.7386 30 6 2.1980 -1.1971 -0.0057 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3633 0.8901 0.5138 34 1 1.6584 2.1326 -0.0004 35 1 4.1206 2.1324 -0.0010 36 1 5.3517 -0.0003 -0.0024 37 1 5.7603 -3.5281 1.2433 38 1 5.9235 -1.7557 1.2445 39 1 4.5894 -2.5270 2.1356 40 1 5.9647 -4.3977 -0.8115 41 1 7.5166 -2.9154 -2.6479 42 1 6.1806 -3.6864 -3.5361 43 1 9.2484 -4.2701 -3.7429 44 1 9.0886 -6.0405 -3.8328 45 1 7.9842 -4.9987 -4.7623 46 1 9.1913 -4.6818 -1.4358 47 1 7.6254 -7.1350 -0.9692 48 1 9.1530 -7.0708 -1.8804 49 1 9.4424 -8.7227 0.2299 50 1 10.6591 -11.2082 2.0957 51 1 1.6580 -2.1323 -0.0105 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731622576.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:13 Heat of formation + Delta-G solvation = -65.445864 kcal Electronic energy + Delta-G solvation = -29772.356545 eV Core-core repulsion = 25670.671819 eV Total energy + Delta-G solvation = -4101.684726 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.37555 -39.02871 -38.41409 -36.93967 -34.54257 -34.15763 -33.73634 -32.38829 -31.33882 -30.75951 -29.73835 -27.00660 -26.61205 -26.21134 -24.53460 -23.92711 -22.27281 -21.42666 -21.01356 -19.52535 -19.29697 -17.95884 -17.02419 -16.82105 -16.30944 -15.97113 -15.61930 -15.44273 -15.11200 -14.82068 -14.59046 -14.48772 -14.07913 -13.92065 -13.81131 -13.56817 -13.33295 -13.19025 -13.10297 -12.87863 -12.58386 -12.44923 -12.35602 -12.25903 -12.22424 -11.88282 -11.75013 -11.62068 -11.60318 -11.43182 -11.10625 -11.07733 -10.99271 -10.93048 -10.37923 -10.26773 -9.70791 -9.56473 -8.94426 -8.86519 -8.63800 -8.54501 -8.15680 -8.00934 -6.46405 -3.87256 1.26124 1.33445 2.71206 3.12980 3.23361 3.24170 3.31107 3.74184 3.85207 4.02305 4.26062 4.42691 4.60763 4.75133 4.76059 4.86486 4.97255 5.00106 5.05974 5.09535 5.10780 5.17459 5.21408 5.23580 5.36296 5.39394 5.46858 5.50632 5.59626 5.61409 5.67090 5.69204 5.73291 5.75676 5.85498 5.94443 5.97088 6.01883 6.02763 6.11804 6.21127 6.40631 6.46593 6.52814 6.56123 6.93484 7.10041 7.51129 7.54799 7.64608 8.01671 8.32000 8.56003 9.13431 9.49333 10.00325 10.71263 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013146 B = 0.001994 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.338676 B =14035.994057 C =15377.261698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.093 4.093 3 C -0.123 4.123 4 C -0.119 4.119 5 C -0.087 4.087 6 C -0.059 4.059 7 C -0.072 4.072 8 H 0.102 0.898 9 C -0.142 4.142 10 C 0.516 3.484 11 O -0.543 6.543 12 N -0.710 5.710 13 C 0.135 3.865 14 C 0.068 3.932 15 H 0.084 0.916 16 C -0.181 4.181 17 N -0.663 5.663 18 C 0.049 3.951 19 C 0.439 3.561 20 O -0.582 6.582 21 N -0.563 5.563 22 C -0.299 4.299 23 H 0.104 0.896 24 C 0.022 3.978 25 N -0.901 5.901 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.282 1.282 30 C -0.113 4.113 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.409 0.591 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.353 0.647 47 H 0.085 0.915 48 H 0.045 0.955 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.157 13.944 -7.742 22.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 C -0.141 4.141 4 C -0.137 4.137 5 C -0.106 4.106 6 C -0.059 4.059 7 C -0.093 4.093 8 H 0.120 0.880 9 C -0.199 4.199 10 C 0.302 3.698 11 O -0.420 6.420 12 N -0.362 5.362 13 C 0.010 3.990 14 C -0.043 4.043 15 H 0.102 0.898 16 C -0.240 4.240 17 N -0.296 5.296 18 C -0.083 4.083 19 C 0.225 3.775 20 O -0.467 6.467 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.542 5.542 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.207 1.207 29 H -0.208 1.208 30 C -0.131 4.131 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.245 0.755 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.173 0.827 47 H 0.103 0.897 48 H 0.063 0.937 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -16.439 15.108 -7.459 23.540 hybrid contribution 1.140 -1.382 0.030 1.792 sum -15.299 13.726 -7.428 21.855 Atomic orbital electron populations 1.20763 0.91366 1.02573 1.02171 1.19818 0.95859 0.93122 1.00529 1.20980 0.94269 0.97304 1.01545 1.21086 0.94232 0.97940 1.00447 1.20905 0.99910 0.91750 0.97988 1.19315 0.93155 0.93739 0.99717 1.20295 0.97402 0.96892 0.94693 0.88014 1.21811 0.99227 1.03599 0.95310 1.20419 0.80193 0.82074 0.87122 1.90699 1.66535 1.37746 1.47054 1.45792 1.43747 1.21092 1.25578 1.21303 0.92990 0.97266 0.87420 1.21855 0.96026 0.97469 0.88944 0.89830 1.22435 1.00057 1.02652 0.98884 1.60189 1.27486 1.10484 1.31400 1.21721 1.00281 0.89729 0.96591 1.19802 0.85415 0.84510 0.87793 1.90536 1.59014 1.35376 1.61735 1.41877 1.49258 1.06358 1.22500 1.19747 1.30059 0.94094 0.98950 0.87861 1.25268 0.98196 0.94801 0.99699 1.69614 1.46892 0.97970 1.39771 0.85807 0.78911 0.78576 0.81102 1.19205 1.20715 1.20775 1.20862 0.93211 0.97588 1.01485 0.91365 0.91647 0.91720 0.86444 0.86231 0.86310 0.90777 0.91814 0.91380 0.75451 0.91637 0.91550 0.91992 0.91943 0.91879 0.82660 0.89668 0.93728 0.77496 0.91902 0.86282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.01 36.00 0.36 -0.43 16 2 C -0.09 -0.92 5.88 -104.62 -0.62 -1.54 16 3 C -0.12 -1.22 9.70 -39.58 -0.38 -1.61 16 4 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 5 C -0.09 -1.07 7.93 -39.59 -0.31 -1.38 16 6 C -0.06 -0.69 4.40 -104.62 -0.46 -1.15 16 7 C -0.07 -0.77 2.90 -92.92 -0.27 -1.04 16 8 H 0.10 0.91 7.88 -51.93 -0.41 0.50 16 9 C -0.14 -1.49 8.90 37.16 0.33 -1.16 16 10 C 0.52 6.76 7.02 -10.99 -0.08 6.68 16 11 O -0.54 -8.88 15.11 5.55 0.08 -8.80 16 12 N -0.71 -8.39 5.28 -60.29 -0.32 -8.71 16 13 C 0.13 1.53 5.37 -4.04 -0.02 1.51 16 14 C 0.07 0.72 2.75 -67.71 -0.19 0.54 16 15 H 0.08 0.83 7.80 -51.93 -0.41 0.43 16 16 C -0.18 -1.71 9.16 37.16 0.34 -1.37 16 17 N -0.66 -9.27 5.32 -107.99 -0.57 -9.85 16 18 C 0.05 0.78 5.97 -4.97 -0.03 0.75 16 19 C 0.44 9.73 7.82 -10.98 -0.09 9.64 16 20 O -0.58 -15.01 15.78 5.54 0.09 -14.92 16 21 N -0.56 -13.67 5.29 -10.96 -0.06 -13.72 16 22 C -0.30 -8.10 9.68 -14.93 -0.14 -8.25 16 23 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 25 N -0.90 -23.96 13.05 55.50 0.72 -23.23 16 26 Si 0.93 20.64 29.55 -169.99 -5.02 15.62 16 27 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 28 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 29 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 30 C -0.11 -1.20 9.33 -39.58 -0.37 -1.57 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 33 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 34 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.12 1.49 7.52 -52.49 -0.39 1.09 16 37 H 0.07 0.81 7.56 -51.93 -0.39 0.42 16 38 H 0.06 0.72 7.39 -51.92 -0.38 0.33 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.41 4.65 7.56 -40.82 -0.31 4.34 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 44 H 0.06 0.61 7.45 -51.93 -0.39 0.23 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.35 5.40 8.17 -39.29 -0.32 5.08 16 47 H 0.09 1.21 8.06 -51.93 -0.42 0.79 16 48 H 0.04 0.64 7.43 -51.93 -0.39 0.26 16 49 H 0.39 9.10 7.90 -40.82 -0.32 8.78 16 50 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 51 H 0.12 1.03 7.95 -52.49 -0.42 0.62 16 LS Contribution 422.32 15.07 6.36 6.36 Total: -1.00 -32.33 422.32 -9.41 -41.74 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: -8.28 Total: 17.11 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -2.42 Total: -1.59 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: -0.23 Total: -55.52 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: 0.17 Total: -23.72 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -32.33 -9.41 -41.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731622576.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.701 kcal (2) G-P(sol) polarization free energy of solvation -32.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds