Wall clock time and date at job start Wed Apr 1 2020 04:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38255 * 120.00544 * 2 1 4 4 C 1.38219 * 120.00134 * 180.02562 * 3 2 1 5 5 C 1.38254 * 119.99926 * 0.02562 * 4 3 2 6 6 C 1.38207 * 120.00146 * 359.97438 * 5 4 3 7 7 C 1.50706 * 120.00414 * 179.97438 * 6 5 4 8 8 H 1.08994 * 109.47173 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.46741 * 59.99904 * 7 6 5 10 10 C 1.50699 * 109.46849 * 300.00295 * 7 6 5 11 11 O 1.21286 * 120.00269 * 359.97438 * 10 7 6 12 12 N 1.34775 * 120.00099 * 179.97438 * 10 7 6 13 13 C 1.46493 * 120.00236 * 179.97438 * 12 10 7 14 14 C 1.53006 * 109.47189 * 180.02562 * 13 12 10 15 15 H 1.08993 * 109.46955 * 65.00107 * 14 13 12 16 16 C 1.52997 * 109.47127 * 185.00095 * 14 13 12 17 17 N 1.46902 * 109.46626 * 304.99760 * 14 13 12 18 18 C 1.46907 * 110.99670 * 155.00338 * 17 14 13 19 19 C 1.50700 * 109.46887 * 180.02562 * 18 17 14 20 20 O 1.21295 * 120.00159 * 359.97438 * 19 18 17 21 21 N 1.34780 * 119.99561 * 179.97438 * 19 18 17 22 22 C 1.37099 * 119.99515 * 180.02562 * 21 19 18 23 23 H 1.07995 * 120.00474 * 359.97438 * 22 21 19 24 24 C 1.38955 * 119.99632 * 180.02562 * 22 21 19 25 25 N 1.31412 * 120.00103 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99786 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47268 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47005 * 120.00128 * 26 24 22 29 29 H 1.48503 * 109.46537 * 239.99993 * 26 24 22 30 30 C 1.38223 * 119.99680 * 180.27102 * 2 1 3 31 31 H 1.09003 * 109.46787 * 89.99881 * 1 2 3 32 32 H 1.08997 * 109.47546 * 210.00201 * 1 2 3 33 33 H 1.09007 * 109.46838 * 330.00506 * 1 2 3 34 34 H 1.08001 * 119.99471 * 359.97438 * 3 2 1 35 35 H 1.07993 * 119.99846 * 179.97438 * 4 3 2 36 36 H 1.08002 * 119.99993 * 179.97438 * 5 4 3 37 37 H 1.09002 * 109.46911 * 180.02562 * 9 7 6 38 38 H 1.09010 * 109.47158 * 300.00176 * 9 7 6 39 39 H 1.09001 * 109.47357 * 59.99936 * 9 7 6 40 40 H 0.97005 * 119.99768 * 0.02562 * 12 10 7 41 41 H 1.08997 * 109.47341 * 59.99745 * 13 12 10 42 42 H 1.09004 * 109.47562 * 299.99900 * 13 12 10 43 43 H 1.09004 * 109.47261 * 59.99697 * 16 14 13 44 44 H 1.09002 * 109.47153 * 179.97438 * 16 14 13 45 45 H 1.09001 * 109.47289 * 299.99953 * 16 14 13 46 46 H 1.00902 * 110.99990 * 278.94758 * 17 14 13 47 47 H 1.09000 * 109.46588 * 299.99934 * 18 17 14 48 48 H 1.08994 * 109.47385 * 59.99624 * 18 17 14 49 49 H 0.97000 * 120.00246 * 359.97438 * 21 19 18 50 50 H 0.96993 * 119.99943 * 180.02562 * 25 24 22 51 51 H 1.07993 * 119.99936 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5806 1.1972 -0.0005 5 6 4.2717 -0.0002 -0.0016 6 6 3.5806 -1.1971 -0.0016 7 6 4.3340 -2.5023 -0.0034 8 1 3.6256 -3.3307 -0.0026 9 6 5.2150 -2.5842 1.2448 10 6 5.1990 -2.5814 -1.2349 11 8 5.2029 -1.6680 -2.0328 12 7 5.9682 -3.6670 -1.4496 13 6 6.8086 -3.7441 -2.6470 14 6 7.5736 -5.0692 -2.6487 15 1 6.8685 -5.8956 -2.7376 16 6 8.5433 -5.0967 -3.8318 17 7 8.3272 -5.2011 -1.3947 18 6 8.5765 -6.6134 -1.0764 19 6 9.3494 -6.7087 0.2138 20 8 9.6622 -5.6994 0.8094 21 7 9.6929 -7.9155 0.7059 22 6 10.3956 -8.0022 1.8800 23 1 10.6742 -7.1036 2.4102 24 6 10.7503 -9.2463 2.3870 25 7 10.4118 -10.3398 1.7416 26 14 11.7083 -9.3645 3.9863 27 1 11.9646 -7.9994 4.5118 28 1 10.9204 -10.1379 4.9793 29 1 13.0022 -10.0501 3.7386 30 6 2.1980 -1.1971 -0.0057 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3633 0.8901 0.5138 34 1 1.6584 2.1326 -0.0004 35 1 4.1206 2.1324 -0.0010 36 1 5.3517 -0.0003 -0.0024 37 1 5.7603 -3.5281 1.2433 38 1 5.9235 -1.7557 1.2445 39 1 4.5894 -2.5270 2.1356 40 1 5.9647 -4.3977 -0.8115 41 1 7.5166 -2.9154 -2.6479 42 1 6.1806 -3.6864 -3.5361 43 1 9.2484 -4.2701 -3.7429 44 1 9.0886 -6.0405 -3.8328 45 1 7.9842 -4.9987 -4.7623 46 1 9.1913 -4.6818 -1.4358 47 1 7.6254 -7.1350 -0.9692 48 1 9.1530 -7.0708 -1.8804 49 1 9.4424 -8.7227 0.2299 50 1 10.6591 -11.2082 2.0957 51 1 1.6580 -2.1323 -0.0105 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731622576.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:12 Heat of formation + Delta-G solvation = -87.108738 kcal Electronic energy + Delta-G solvation = -29773.295918 eV Core-core repulsion = 25670.671819 eV Total energy + Delta-G solvation = -4102.624098 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.31207 -40.22139 -39.77874 -38.11573 -35.95254 -35.44159 -34.94165 -33.26617 -33.12991 -31.88851 -30.56421 -27.94937 -27.69230 -27.35111 -25.73062 -25.26785 -23.06635 -22.28745 -21.97498 -21.08886 -20.39084 -19.89507 -18.10062 -17.75542 -17.51315 -17.14257 -16.69168 -16.59570 -16.34591 -16.25949 -15.77741 -15.66642 -15.38284 -15.12169 -14.76476 -14.50714 -14.38653 -14.33737 -13.94733 -13.82415 -13.66345 -13.51099 -13.40774 -13.25825 -13.15713 -13.06542 -12.99562 -12.77481 -12.63907 -12.55351 -12.41973 -12.37249 -12.11401 -11.91655 -11.83147 -11.72758 -11.49337 -10.75288 -10.31459 -9.98826 -9.95720 -9.68031 -9.43564 -9.33067 -8.45467 -5.93307 0.44862 0.52755 1.37021 1.42792 1.56177 1.68827 2.08928 2.28769 2.31698 2.89052 2.94532 3.22560 3.54415 3.58811 3.80198 3.86653 4.02223 4.07242 4.14639 4.19988 4.27505 4.30735 4.33391 4.36935 4.50828 4.55559 4.59110 4.63231 4.66143 4.71520 4.79938 4.86649 4.88165 4.88956 4.90195 5.00349 5.02049 5.19356 5.23344 5.25861 5.34025 5.43123 5.54791 5.59860 5.70336 5.73333 5.90666 6.11584 6.15955 6.36774 6.62446 6.65978 7.15362 7.32097 7.59863 8.15263 8.71978 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013146 B = 0.001994 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.338676 B =14035.994057 C =15377.261698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.098 4.098 3 C -0.129 4.129 4 C -0.130 4.130 5 C -0.111 4.111 6 C -0.073 4.073 7 C -0.065 4.065 8 H 0.125 0.875 9 C -0.136 4.136 10 C 0.513 3.487 11 O -0.580 6.580 12 N -0.705 5.705 13 C 0.136 3.864 14 C 0.077 3.923 15 H 0.101 0.899 16 C -0.177 4.177 17 N -0.672 5.672 18 C 0.066 3.934 19 C 0.439 3.561 20 O -0.622 6.622 21 N -0.574 5.574 22 C -0.330 4.330 23 H 0.078 0.922 24 C -0.013 4.013 25 N -0.920 5.920 26 Si 0.989 3.011 27 H -0.274 1.274 28 H -0.271 1.271 29 H -0.273 1.273 30 C -0.123 4.123 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.140 0.860 35 H 0.132 0.868 36 H 0.102 0.898 37 H 0.069 0.931 38 H 0.048 0.952 39 H 0.080 0.920 40 H 0.413 0.587 41 H 0.049 0.951 42 H 0.075 0.925 43 H 0.056 0.944 44 H 0.062 0.938 45 H 0.080 0.920 46 H 0.344 0.656 47 H 0.110 0.890 48 H 0.066 0.934 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.842 13.248 -8.200 23.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.098 4.098 3 C -0.147 4.147 4 C -0.148 4.148 5 C -0.130 4.130 6 C -0.074 4.074 7 C -0.086 4.086 8 H 0.143 0.857 9 C -0.193 4.193 10 C 0.300 3.700 11 O -0.460 6.460 12 N -0.356 5.356 13 C 0.012 3.988 14 C -0.033 4.033 15 H 0.119 0.881 16 C -0.236 4.236 17 N -0.304 5.304 18 C -0.066 4.066 19 C 0.226 3.774 20 O -0.509 6.509 21 N -0.212 5.212 22 C -0.460 4.460 23 H 0.096 0.904 24 C -0.213 4.213 25 N -0.561 5.561 26 Si 0.814 3.186 27 H -0.199 1.199 28 H -0.196 1.196 29 H -0.198 1.198 30 C -0.141 4.141 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.158 0.842 35 H 0.150 0.850 36 H 0.121 0.879 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.099 0.901 40 H 0.250 0.750 41 H 0.068 0.932 42 H 0.094 0.906 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.099 0.901 46 H 0.163 0.837 47 H 0.128 0.872 48 H 0.084 0.916 49 H 0.230 0.770 50 H 0.086 0.914 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -18.135 14.378 -7.936 24.466 hybrid contribution 1.635 -1.084 0.127 1.966 sum -16.500 13.294 -7.809 22.582 Atomic orbital electron populations 1.20811 0.89203 1.03729 1.02920 1.20232 0.97533 0.92816 0.99262 1.21302 0.93968 0.98533 1.00919 1.21325 0.95071 0.98027 1.00385 1.20945 0.99373 0.92919 0.99730 1.19474 0.93935 0.93704 1.00258 1.20299 0.97355 0.97575 0.93409 0.85679 1.21751 0.99081 1.02619 0.95885 1.20825 0.80181 0.81635 0.87349 1.90677 1.67823 1.38997 1.48494 1.45810 1.43236 1.20826 1.25701 1.21322 0.92784 0.97130 0.87592 1.21855 0.95984 0.97507 0.87906 0.88089 1.22387 0.99766 1.02449 0.98999 1.60161 1.27214 1.09299 1.33752 1.21576 1.00528 0.91220 0.93304 1.20927 0.84187 0.83137 0.89108 1.90511 1.60289 1.36595 1.63458 1.41938 1.49751 1.07307 1.22179 1.19664 1.32008 0.93709 1.00571 0.90430 1.25985 0.98652 0.94199 1.02447 1.69666 1.47270 0.98305 1.40852 0.84919 0.77974 0.78164 0.77592 1.19902 1.19648 1.19808 1.21149 0.92826 0.98859 1.01299 0.90679 0.90658 0.90481 0.84209 0.85023 0.87934 0.91235 0.93307 0.90125 0.75016 0.93246 0.90646 0.92507 0.91911 0.90073 0.83665 0.87235 0.91569 0.76980 0.91392 0.84419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 10.01 71.24 0.71 -0.58 16 2 C -0.10 -1.80 5.88 -19.86 -0.12 -1.91 16 3 C -0.13 -2.43 9.70 22.27 0.22 -2.22 16 4 C -0.13 -2.84 10.05 22.27 0.22 -2.62 16 5 C -0.11 -2.83 7.93 22.27 0.18 -2.65 16 6 C -0.07 -1.71 4.40 -19.86 -0.09 -1.80 16 7 C -0.07 -1.39 2.90 -12.28 -0.04 -1.43 16 8 H 0.13 2.03 7.88 -2.39 -0.02 2.01 16 9 C -0.14 -2.88 8.90 71.98 0.64 -2.24 16 10 C 0.51 13.48 7.02 87.66 0.62 14.09 16 11 O -0.58 -19.40 15.11 -3.05 -0.05 -19.44 16 12 N -0.70 -16.23 5.28 -463.06 -2.44 -18.68 16 13 C 0.14 2.97 5.37 86.38 0.46 3.43 16 14 C 0.08 1.50 2.75 44.92 0.12 1.62 16 15 H 0.10 1.67 7.80 -2.39 -0.02 1.65 16 16 C -0.18 -2.96 9.16 71.98 0.66 -2.30 16 17 N -0.67 -18.03 5.32 -495.56 -2.63 -20.66 16 18 C 0.07 1.96 5.97 85.56 0.51 2.47 16 19 C 0.44 19.43 7.82 87.66 0.69 20.12 16 20 O -0.62 -32.72 15.78 -3.08 -0.05 -32.77 16 21 N -0.57 -28.05 5.29 -306.97 -1.62 -29.67 16 22 C -0.33 -18.20 9.68 84.04 0.81 -17.39 16 23 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 24 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 25 N -0.92 -48.43 13.05 21.66 0.28 -48.15 16 26 Si 0.99 42.21 29.55 68.60 2.03 44.24 16 27 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 28 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 29 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 30 C -0.12 -2.47 9.33 22.27 0.21 -2.26 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 0.74 8.09 -2.39 -0.02 0.72 16 33 H 0.08 0.72 8.09 -2.38 -0.02 0.70 16 34 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 35 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 36 H 0.10 2.82 7.52 -2.91 -0.02 2.79 16 37 H 0.07 1.52 7.56 -2.39 -0.02 1.50 16 38 H 0.05 1.16 7.39 -2.38 -0.02 1.14 16 39 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.41 8.94 7.56 -92.70 -0.70 8.24 16 41 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.06 1.02 8.13 -2.38 -0.02 1.00 16 44 H 0.06 1.07 7.45 -2.39 -0.02 1.05 16 45 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.34 10.43 8.17 -89.69 -0.73 9.70 16 47 H 0.11 2.79 8.06 -2.39 -0.02 2.77 16 48 H 0.07 1.73 7.43 -2.39 -0.02 1.72 16 49 H 0.40 18.33 7.90 -92.71 -0.73 17.60 16 50 H 0.28 13.65 8.31 -92.71 -0.77 12.88 16 51 H 0.14 2.11 7.95 -2.91 -0.02 2.09 16 Total: -1.00 -71.21 422.32 0.58 -70.63 By element: Atomic # 1 Polarization: 51.61 SS G_CDS: -1.21 Total: 50.40 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: 6.28 Total: 4.11 kcal Atomic # 7 Polarization: -110.74 SS G_CDS: -6.42 Total: -117.16 kcal Atomic # 8 Polarization: -52.12 SS G_CDS: -0.09 Total: -52.22 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -71.21 0.58 -70.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731622576.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.481 kcal (2) G-P(sol) polarization free energy of solvation -71.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds