Wall clock time and date at job start Wed Apr 1 2020 05:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38383 * 119.92518 * 2 1 4 4 C 1.38342 * 120.29193 * 179.97438 * 3 2 1 5 5 C 1.37982 * 120.14223 * 359.78849 * 4 3 2 6 6 C 1.50706 * 120.07305 * 180.23165 * 5 4 3 7 7 C 1.39558 * 119.85121 * 0.48953 * 5 4 3 8 8 C 1.47849 * 120.14225 * 179.76468 * 7 5 4 9 9 O 1.21556 * 119.99729 * 353.48025 * 8 7 5 10 10 N 1.34774 * 119.99935 * 173.47576 * 8 7 5 11 11 C 1.46504 * 119.99930 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.46964 * 179.97438 * 11 10 8 13 13 H 1.08997 * 109.47719 * 305.00135 * 12 11 10 14 14 C 1.53001 * 109.46979 * 65.00283 * 12 11 10 15 15 C 1.52998 * 109.46959 * 184.99881 * 12 11 10 16 16 N 1.46897 * 109.47093 * 175.00100 * 15 12 11 17 17 C 1.46903 * 111.00148 * 180.02562 * 16 15 12 18 18 C 1.50706 * 109.47221 * 180.02562 * 17 16 15 19 19 O 1.21287 * 119.99966 * 0.02562 * 18 17 16 20 20 N 1.34772 * 119.99876 * 180.02562 * 18 17 16 21 21 C 1.37103 * 120.00152 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99636 * 0.02562 * 21 20 18 23 23 C 1.38943 * 120.00065 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99766 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 120.00271 * 0.02562 * 23 21 20 26 26 H 1.48493 * 109.47186 * 89.99857 * 25 23 21 27 27 H 1.48504 * 109.47295 * 209.99747 * 25 23 21 28 28 H 1.48504 * 109.46942 * 329.99542 * 25 23 21 29 29 C 1.37934 * 119.92734 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.47328 * 269.97447 * 1 2 3 31 31 H 1.09001 * 109.47209 * 29.97885 * 1 2 3 32 32 H 1.08999 * 109.47256 * 149.97284 * 1 2 3 33 33 H 1.07996 * 119.85559 * 0.02562 * 3 2 1 34 34 H 1.07996 * 119.92866 * 180.02562 * 4 3 2 35 35 H 1.08995 * 109.46630 * 263.66773 * 6 5 4 36 36 H 1.08997 * 109.46745 * 23.66861 * 6 5 4 37 37 H 1.08999 * 109.46944 * 143.66731 * 6 5 4 38 38 H 0.96998 * 119.99850 * 0.02562 * 10 8 7 39 39 H 1.09002 * 109.46600 * 60.00393 * 11 10 8 40 40 H 1.09000 * 109.47257 * 300.00574 * 11 10 8 41 41 H 1.09004 * 109.47155 * 179.97438 * 14 12 11 42 42 H 1.08998 * 109.47409 * 299.99623 * 14 12 11 43 43 H 1.09007 * 109.47048 * 60.00014 * 14 12 11 44 44 H 1.09001 * 109.47397 * 55.00553 * 15 12 11 45 45 H 1.09000 * 109.47559 * 295.00173 * 15 12 11 46 46 H 1.00902 * 111.00068 * 56.05237 * 16 15 12 47 47 H 1.08995 * 109.47354 * 300.00072 * 17 16 15 48 48 H 1.08999 * 109.46897 * 60.00461 * 17 16 15 49 49 H 0.97003 * 120.00046 * 0.02562 * 20 18 17 50 50 H 0.97002 * 120.00117 * 180.02562 * 24 23 21 51 51 H 1.07997 * 120.07356 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5808 1.2082 0.0005 5 6 4.2812 0.0194 0.0055 6 6 5.7882 0.0309 0.0113 7 6 3.5911 -1.1936 -0.0004 8 6 4.3352 -2.4711 -0.0004 9 8 5.5454 -2.4696 -0.1149 10 7 3.6718 -3.6374 0.1266 11 6 4.4091 -4.9034 0.1260 12 6 3.4268 -6.0657 0.2837 13 1 2.8248 -5.9138 1.1795 14 6 2.5117 -6.1297 -0.9408 15 6 4.2046 -7.3773 0.4082 16 7 3.2694 -8.4773 0.6791 17 6 3.9824 -9.7554 0.8058 18 6 2.9924 -10.8577 1.0821 19 8 1.8094 -10.6036 1.1648 20 7 3.4218 -12.1257 1.2372 21 6 2.5213 -13.1286 1.4881 22 1 1.4677 -12.9025 1.5609 23 6 2.9639 -14.4359 1.6475 24 7 2.1006 -15.3972 1.8874 25 14 4.7861 -14.8272 1.5208 26 1 5.4109 -14.7149 2.8631 27 1 4.9610 -16.2096 1.0074 28 1 5.4347 -13.8680 0.5909 29 6 2.1952 -1.1954 -0.0005 30 1 -0.3634 -0.0005 1.0276 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3634 -0.8897 -0.5142 33 1 1.6538 2.1325 0.0004 34 1 4.1136 2.1476 0.0009 35 1 6.1563 -0.0816 -1.0084 36 1 6.1427 0.9756 0.4235 37 1 6.1555 -0.7930 0.6232 38 1 2.7061 -3.6386 0.2176 39 1 5.1173 -4.9117 0.9546 40 1 4.9494 -5.0088 -0.8148 41 1 1.8122 -6.9581 -0.8287 42 1 1.9576 -5.1953 -1.0296 43 1 3.1138 -6.2817 -1.8368 44 1 4.9202 -7.2992 1.2267 45 1 4.7369 -7.5739 -0.5224 46 1 2.5566 -8.5296 -0.0332 47 1 4.5135 -9.9687 -0.1218 48 1 4.6962 -9.6934 1.6272 49 1 4.3681 -12.3288 1.1714 50 1 2.4096 -16.3099 1.9991 51 1 1.6552 -2.1307 -0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732369685.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:54 Heat of formation + Delta-G solvation = -80.690011 kcal Electronic energy + Delta-G solvation = -28945.533796 eV Core-core repulsion = 24843.188035 eV Total energy + Delta-G solvation = -4102.345761 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.47384 -40.33422 -39.61839 -38.31630 -36.27959 -35.78375 -34.59278 -33.81349 -33.56541 -31.96026 -30.09276 -28.92566 -27.81854 -26.56381 -25.87213 -24.87272 -24.04688 -22.13506 -21.65032 -21.32631 -20.85552 -20.22019 -18.40428 -17.89900 -17.30653 -17.11485 -16.73064 -16.57456 -16.52920 -16.10647 -15.92647 -15.66332 -15.56465 -15.06504 -14.99963 -14.65414 -14.47176 -14.36866 -14.25979 -14.03171 -13.81920 -13.74976 -13.53533 -13.46738 -13.26928 -13.12267 -12.83158 -12.78695 -12.54476 -12.46857 -12.41214 -12.11427 -11.99874 -11.95915 -11.84735 -11.75701 -11.51437 -10.70432 -10.43540 -10.24835 -10.21411 -9.89997 -9.43698 -9.32339 -8.41425 -6.02386 -0.13722 0.35800 1.30475 1.35923 1.44609 1.83902 1.95496 2.09370 2.23020 2.75488 2.81231 3.15012 3.42188 3.64117 3.79379 3.85157 3.90186 3.94944 3.97794 4.06529 4.17780 4.28048 4.43411 4.43763 4.52081 4.55225 4.58322 4.61997 4.73777 4.74480 4.78551 4.81068 4.83993 4.88436 4.94519 4.98642 5.00611 5.14911 5.24559 5.28886 5.32572 5.36941 5.47864 5.52616 5.57670 5.60317 5.90379 5.96178 6.04628 6.39859 6.48251 6.59699 6.87865 7.16248 7.39700 7.96063 8.76148 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023778 B = 0.001497 C = 0.001422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.268690 B =18704.105170 C =19691.082637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.106 4.106 3 C -0.091 4.091 4 C -0.131 4.131 5 C -0.050 4.050 6 C -0.115 4.115 7 C -0.156 4.156 8 C 0.552 3.448 9 O -0.566 6.566 10 N -0.713 5.713 11 C 0.133 3.867 12 C -0.090 4.090 13 H 0.084 0.916 14 C -0.151 4.151 15 C 0.067 3.933 16 N -0.686 5.686 17 C 0.061 3.939 18 C 0.448 3.552 19 O -0.614 6.614 20 N -0.591 5.591 21 C -0.330 4.330 22 H 0.056 0.944 23 C -0.014 4.014 24 N -0.934 5.934 25 Si 0.965 3.035 26 H -0.258 1.258 27 H -0.275 1.275 28 H -0.231 1.231 29 C -0.087 4.087 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.152 0.848 34 H 0.148 0.852 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.410 0.590 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.054 0.946 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.083 0.917 45 H 0.045 0.955 46 H 0.345 0.655 47 H 0.076 0.924 48 H 0.114 0.886 49 H 0.390 0.610 50 H 0.279 0.721 51 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.171 35.533 -6.475 36.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.106 4.106 3 C -0.109 4.109 4 C -0.149 4.149 5 C -0.051 4.051 6 C -0.171 4.171 7 C -0.159 4.159 8 C 0.341 3.659 9 O -0.448 6.448 10 N -0.366 5.366 11 C 0.009 3.991 12 C -0.109 4.109 13 H 0.103 0.897 14 C -0.208 4.208 15 C -0.062 4.062 16 N -0.319 5.319 17 C -0.072 4.072 18 C 0.236 3.764 19 O -0.498 6.498 20 N -0.233 5.233 21 C -0.459 4.459 22 H 0.074 0.926 23 C -0.213 4.213 24 N -0.574 5.574 25 Si 0.785 3.215 26 H -0.182 1.182 27 H -0.200 1.200 28 H -0.154 1.154 29 C -0.106 4.106 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.169 0.831 34 H 0.166 0.834 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.248 0.752 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.101 0.899 45 H 0.063 0.937 46 H 0.165 0.835 47 H 0.094 0.906 48 H 0.132 0.868 49 H 0.225 0.775 50 H 0.089 0.911 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.163 35.558 -5.790 36.550 hybrid contribution 0.352 -1.259 -0.740 1.502 sum 6.515 34.299 -6.531 35.518 Atomic orbital electron populations 1.20856 0.88972 1.03976 1.03298 1.20183 0.97693 0.92619 1.00091 1.21612 0.94052 0.98792 0.96417 1.21317 0.94673 0.97684 1.01199 1.20236 0.96971 0.92261 0.95636 1.20967 0.90436 1.02976 1.02743 1.19806 0.94314 0.92650 1.09129 1.18573 0.86882 0.84472 0.75960 1.90716 1.15124 1.87665 1.51250 1.45860 1.11605 1.05321 1.73770 1.21278 0.94150 0.81513 1.02180 1.21222 0.96681 0.92784 1.00262 0.89736 1.21888 0.99498 1.02453 0.96996 1.21954 0.94126 0.89249 1.00849 1.60077 1.14960 1.02506 1.54375 1.21638 0.94472 0.87702 1.03365 1.20999 0.90051 0.83889 0.81475 1.90537 1.20097 1.83228 1.55983 1.42037 1.08843 1.06738 1.65646 1.19020 0.91173 0.87705 1.48040 0.92635 1.26105 1.04906 0.94261 0.96004 1.69804 1.37313 1.01661 1.48666 0.85367 0.76673 0.79282 0.80209 1.18219 1.20026 1.15445 1.21388 0.92030 0.99389 0.97755 0.90296 0.90179 0.90801 0.83061 0.83413 0.91581 0.90639 0.90958 0.75213 0.91628 0.91511 0.92745 0.91271 0.92282 0.89908 0.93701 0.83481 0.90593 0.86790 0.77464 0.91147 0.84071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.01 71.24 0.71 0.00 16 2 C -0.11 -1.16 5.87 -19.90 -0.12 -1.28 16 3 C -0.09 -0.92 9.69 22.33 0.22 -0.71 16 4 C -0.13 -1.63 9.66 22.23 0.21 -1.41 16 5 C -0.05 -0.87 5.91 -19.60 -0.12 -0.98 16 6 C -0.12 -2.04 8.73 71.24 0.62 -1.42 16 7 C -0.16 -2.81 5.87 -20.09 -0.12 -2.92 16 8 C 0.55 11.63 7.70 86.79 0.67 12.30 16 9 O -0.57 -15.43 13.35 -3.89 -0.05 -15.48 16 10 N -0.71 -11.51 5.23 -465.96 -2.44 -13.95 16 11 C 0.13 2.21 5.06 86.38 0.44 2.65 16 12 C -0.09 -1.49 2.63 -10.80 -0.03 -1.52 16 13 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 14 C -0.15 -2.36 8.84 71.98 0.64 -1.73 16 15 C 0.07 1.30 5.14 86.30 0.44 1.75 16 16 N -0.69 -19.12 6.12 -517.93 -3.17 -22.30 16 17 C 0.06 1.81 6.17 85.56 0.53 2.33 16 18 C 0.45 20.06 7.82 87.66 0.69 20.75 16 19 O -0.61 -33.80 15.78 -3.05 -0.05 -33.85 16 20 N -0.59 -27.77 5.09 -306.99 -1.56 -29.33 16 21 C -0.33 -19.36 10.16 84.04 0.85 -18.50 16 22 H 0.06 3.88 7.39 -2.91 -0.02 3.85 16 23 C -0.01 -0.78 5.50 84.92 0.47 -0.31 16 24 N -0.93 -56.28 13.96 21.66 0.30 -55.98 16 25 Si 0.96 38.70 27.74 68.60 1.90 40.60 16 26 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 27 H -0.28 -10.96 7.11 99.48 0.71 -10.26 16 28 H -0.23 -7.77 6.52 99.48 0.65 -7.12 16 29 C -0.09 -1.15 9.17 22.53 0.21 -0.94 16 30 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.08 0.32 8.08 -2.39 -0.02 0.30 16 32 H 0.07 0.40 8.08 -2.39 -0.02 0.38 16 33 H 0.15 0.72 8.06 -2.91 -0.02 0.69 16 34 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 35 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.07 0.97 8.04 -2.39 -0.02 0.96 16 37 H 0.07 1.63 5.86 -2.39 -0.01 1.61 16 38 H 0.41 4.77 5.73 -92.71 -0.53 4.24 16 39 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 40 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.05 1.03 6.68 -2.38 -0.02 1.02 16 42 H 0.07 0.85 7.18 -2.39 -0.02 0.84 16 43 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 44 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.35 10.26 6.68 -89.69 -0.60 9.66 16 47 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 48 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 49 H 0.39 15.11 5.76 -92.71 -0.53 14.58 16 50 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 51 H 0.14 1.25 6.46 -2.91 -0.02 1.23 16 Total: -1.00 -80.90 413.74 0.49 -80.41 By element: Atomic # 1 Polarization: 42.58 SS G_CDS: -0.76 Total: 41.82 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: 6.31 Total: 8.06 kcal Atomic # 7 Polarization: -114.69 SS G_CDS: -6.87 Total: -121.56 kcal Atomic # 8 Polarization: -49.23 SS G_CDS: -0.10 Total: -49.33 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 1.90 Total: 40.60 kcal Total: -80.90 0.49 -80.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732369685.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.277 kcal (2) G-P(sol) polarization free energy of solvation -80.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds