Wall clock time and date at job start Wed Apr 1 2020 04:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38368 * 119.92452 * 2 1 4 4 C 1.38354 * 120.28853 * 179.97438 * 3 2 1 5 5 C 1.50705 * 119.92564 * 180.02562 * 4 3 2 6 6 C 1.37958 * 120.15014 * 0.02562 * 4 3 2 7 7 C 1.39579 * 119.85151 * 359.97438 * 6 4 3 8 8 C 1.47843 * 120.14444 * 179.72470 * 7 6 4 9 9 O 1.21546 * 120.00065 * 320.97631 * 8 7 6 10 10 N 1.34778 * 119.99874 * 140.97511 * 8 7 6 11 11 C 1.46500 * 119.99988 * 4.83489 * 10 8 7 12 12 C 1.46497 * 119.99750 * 184.84375 * 10 8 7 13 13 C 1.52991 * 109.47612 * 89.99851 * 12 10 8 14 14 N 1.46903 * 109.47198 * 180.02562 * 13 12 10 15 15 C 1.46897 * 111.00340 * 66.04406 * 14 13 12 16 16 C 1.46904 * 111.00003 * 190.00015 * 14 13 12 17 17 C 1.50692 * 109.47317 * 170.00011 * 16 14 13 18 18 O 1.21302 * 120.00006 * 359.97438 * 17 16 14 19 19 N 1.34780 * 120.00168 * 179.97438 * 17 16 14 20 20 C 1.37099 * 119.99766 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00230 * 359.97438 * 20 19 17 22 22 C 1.38948 * 119.99945 * 180.02562 * 20 19 17 23 23 N 1.31413 * 119.99917 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00427 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47008 * 89.99570 * 24 22 20 26 26 H 1.48495 * 109.47202 * 209.99746 * 24 22 20 27 27 H 1.48498 * 109.46884 * 329.99902 * 24 22 20 28 28 C 1.37951 * 119.93020 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47372 * 90.00400 * 1 2 3 30 30 H 1.09004 * 109.47423 * 209.99743 * 1 2 3 31 31 H 1.09000 * 109.47335 * 330.00343 * 1 2 3 32 32 H 1.07994 * 119.85380 * 359.95347 * 3 2 1 33 33 H 1.09001 * 109.46914 * 269.97957 * 5 4 3 34 34 H 1.09003 * 109.47172 * 29.97467 * 5 4 3 35 35 H 1.08995 * 109.47480 * 149.97993 * 5 4 3 36 36 H 1.07997 * 120.07648 * 179.97438 * 6 4 3 37 37 H 1.09000 * 109.46522 * 85.56872 * 11 10 8 38 38 H 1.08997 * 109.46806 * 205.56237 * 11 10 8 39 39 H 1.08999 * 109.47436 * 325.56706 * 11 10 8 40 40 H 1.09006 * 109.46791 * 210.00002 * 12 10 8 41 41 H 1.09002 * 109.47171 * 329.99477 * 12 10 8 42 42 H 1.09007 * 109.47245 * 299.99371 * 13 12 10 43 43 H 1.08995 * 109.47388 * 59.99891 * 13 12 10 44 44 H 1.09005 * 109.46946 * 60.00215 * 15 14 13 45 45 H 1.08994 * 109.47218 * 179.97438 * 15 14 13 46 46 H 1.08993 * 109.47136 * 300.00098 * 15 14 13 47 47 H 1.09003 * 109.47240 * 289.99582 * 16 14 13 48 48 H 1.08995 * 109.47440 * 49.99450 * 16 14 13 49 49 H 0.96994 * 120.00131 * 359.97438 * 19 17 16 50 50 H 0.97000 * 120.00517 * 180.02562 * 23 22 20 51 51 H 1.08000 * 120.07587 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1972 1.1992 0.0000 4 6 3.5807 1.2080 0.0005 5 6 4.3242 2.5189 0.0011 6 6 4.2812 0.0195 0.0005 7 6 3.5910 -1.1937 0.0005 8 6 4.3352 -2.4712 -0.0056 9 8 5.3449 -2.5832 -0.6729 10 7 3.8939 -3.5117 0.7287 11 6 2.6218 -3.4129 1.4487 12 6 4.6864 -4.7412 0.8071 13 6 5.6552 -4.6493 1.9877 14 7 6.4503 -5.8821 2.0658 15 6 7.3328 -6.0143 0.8990 16 6 7.2195 -5.9340 3.3163 17 6 7.8243 -7.3048 3.4775 18 8 7.6328 -8.1552 2.6340 19 7 8.5778 -7.5860 4.5590 20 6 9.1275 -8.8334 4.7059 21 1 8.9564 -9.5907 3.9553 22 6 9.9039 -9.1235 5.8211 23 7 10.1117 -8.2021 6.7348 24 14 10.6523 -10.8232 6.0218 25 1 11.9950 -10.8507 5.3881 26 1 10.7803 -11.1403 7.4668 27 1 9.7765 -11.8297 5.3698 28 6 2.1952 -1.1955 0.0005 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6536 2.1324 -0.0008 33 1 4.5042 2.8349 -1.0264 34 1 3.7289 3.2740 0.5145 35 1 5.2772 2.3959 0.5156 36 1 5.3611 0.0277 0.0005 37 1 1.8043 -3.6839 0.7805 38 1 2.6337 -4.0910 2.3019 39 1 2.4810 -2.3904 1.7990 40 1 4.0216 -5.5936 0.9482 41 1 5.2505 -4.8695 -0.1167 42 1 6.3200 -3.7970 1.8466 43 1 5.0912 -4.5211 2.9115 44 1 8.0118 -5.1625 0.8586 45 1 7.9102 -6.9349 0.9825 46 1 6.7317 -6.0431 -0.0098 47 1 8.0137 -5.1879 3.2856 48 1 6.5590 -5.7269 4.1581 49 1 8.7312 -6.9059 5.2334 50 1 10.6540 -8.4044 7.5132 51 1 1.6553 -2.1309 0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732597401.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:11 Heat of formation + Delta-G solvation = -33.429332 kcal Electronic energy + Delta-G solvation = -29743.825755 eV Core-core repulsion = 25643.529371 eV Total energy + Delta-G solvation = -4100.296385 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.80266 -39.12606 -38.49981 -36.72515 -35.56716 -33.97772 -33.80772 -32.67707 -31.22159 -29.90815 -27.84260 -27.66426 -27.32866 -26.79228 -25.53340 -24.39506 -22.96329 -21.23197 -21.00343 -19.47456 -19.08446 -17.81487 -17.27862 -16.89207 -16.55903 -16.16731 -15.89419 -15.38318 -15.15419 -14.66913 -14.52705 -14.41736 -14.25707 -13.94033 -13.79661 -13.65546 -13.56223 -13.42467 -13.24328 -13.13281 -12.96843 -12.79389 -12.47985 -12.36162 -12.12751 -12.04994 -11.88142 -11.78426 -11.48602 -11.38563 -11.27528 -11.18666 -10.90108 -10.74800 -10.37047 -10.19513 -10.08659 -9.44979 -9.17944 -9.01136 -8.92066 -8.39154 -7.94999 -7.82488 -6.39087 -3.79749 0.59974 0.93204 2.46567 2.70784 3.19694 3.28099 3.34196 3.36383 3.93809 4.05021 4.14905 4.30940 4.31854 4.36647 4.64219 4.80281 4.83601 4.90690 4.92279 5.03026 5.04039 5.10074 5.15195 5.16806 5.22268 5.22873 5.28809 5.37669 5.39266 5.43401 5.52919 5.61486 5.70750 5.73151 5.77545 5.83450 5.92680 5.95686 6.00796 6.05050 6.09634 6.14573 6.28245 6.33001 6.51810 6.63716 7.10212 7.29951 7.41463 7.57800 7.91824 8.09349 8.64955 9.20946 9.57545 10.09632 10.78745 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022550 B = 0.001690 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.397539 B =16563.842701 C =16840.196883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.090 4.090 3 C -0.101 4.101 4 C -0.088 4.088 5 C -0.115 4.115 6 C -0.072 4.072 7 C -0.119 4.119 8 C 0.557 3.443 9 O -0.530 6.530 10 N -0.609 5.609 11 C 0.071 3.929 12 C 0.117 3.883 13 C 0.042 3.958 14 N -0.516 5.516 15 C 0.020 3.980 16 C 0.047 3.953 17 C 0.445 3.555 18 O -0.577 6.577 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C -0.102 4.102 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.125 0.875 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.130 0.870 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.033 0.967 43 H 0.072 0.928 44 H 0.015 0.985 45 H 0.096 0.904 46 H 0.061 0.939 47 H 0.047 0.953 48 H 0.087 0.913 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.675 22.113 -10.435 31.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.090 4.090 3 C -0.119 4.119 4 C -0.088 4.088 5 C -0.172 4.172 6 C -0.091 4.091 7 C -0.122 4.122 8 C 0.346 3.654 9 O -0.406 6.406 10 N -0.342 5.342 11 C -0.072 4.072 12 C -0.005 4.005 13 C -0.088 4.088 14 N -0.240 5.240 15 C -0.127 4.127 16 C -0.084 4.084 17 C 0.231 3.769 18 O -0.461 6.461 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.194 1.194 28 C -0.120 4.120 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.143 0.857 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.148 0.852 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.051 0.949 43 H 0.091 0.909 44 H 0.034 0.966 45 H 0.114 0.886 46 H 0.080 0.920 47 H 0.065 0.935 48 H 0.105 0.895 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -19.479 21.034 -11.172 30.768 hybrid contribution 1.024 0.328 0.764 1.319 sum -18.455 21.362 -10.409 30.088 Atomic orbital electron populations 1.20800 0.90644 1.03058 1.02584 1.19849 0.96325 0.92739 1.00134 1.21104 0.93487 0.97747 0.99603 1.19868 0.93798 0.95298 0.99861 1.20810 1.00162 0.93535 1.02655 1.21069 1.00301 0.90403 0.97327 1.19862 0.93880 0.93448 1.04985 1.18418 0.84310 0.83411 0.79310 1.90804 1.25485 1.82861 1.41472 1.47738 1.22431 1.15149 1.48861 1.22186 0.84699 1.03430 0.96903 1.21530 0.94245 0.84885 0.99852 1.22430 0.96160 0.91434 0.98742 1.61526 1.26016 1.34240 1.02229 1.22583 0.95775 1.02262 0.92106 1.21855 0.96901 0.97014 0.92674 1.19723 0.83752 0.89174 0.84291 1.90485 1.63639 1.48859 1.43087 1.41866 1.44377 1.13833 1.20116 1.19701 1.26818 0.89677 1.06534 0.87901 1.25259 0.97693 0.99553 0.95512 1.69614 1.39808 1.33894 1.11098 0.85855 0.79306 0.81839 0.77271 1.20457 1.20963 1.19419 1.21508 0.92777 0.98622 0.99090 0.90997 0.91260 0.91344 0.85719 0.90899 0.91332 0.91207 0.85189 0.92181 0.90341 0.90460 0.89166 0.89275 0.94859 0.90909 0.96597 0.88556 0.91992 0.93479 0.89486 0.77514 0.91921 0.84687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.49 10.01 36.00 0.36 -0.13 16 2 C -0.09 -0.62 5.87 -104.68 -0.61 -1.24 16 3 C -0.10 -0.70 9.35 -39.49 -0.37 -1.07 16 4 C -0.09 -0.70 5.87 -104.68 -0.61 -1.32 16 5 C -0.11 -0.65 10.01 36.01 0.36 -0.29 16 6 C -0.07 -0.72 9.28 -39.18 -0.36 -1.09 16 7 C -0.12 -1.24 5.23 -104.97 -0.55 -1.79 16 8 C 0.56 7.18 7.35 -12.33 -0.09 7.09 16 9 O -0.53 -8.84 16.46 5.33 0.09 -8.75 16 10 N -0.61 -6.67 2.87 -182.70 -0.52 -7.19 16 11 C 0.07 0.50 8.88 59.85 0.53 1.03 16 12 C 0.12 1.48 5.35 -4.05 -0.02 1.45 16 13 C 0.04 0.59 5.28 -3.83 -0.02 0.57 16 14 N -0.52 -9.02 4.50 -244.38 -1.10 -10.12 16 15 C 0.02 0.36 8.96 60.06 0.54 0.90 16 16 C 0.05 0.88 5.45 -4.98 -0.03 0.85 16 17 C 0.45 10.71 7.47 -10.99 -0.08 10.62 16 18 O -0.58 -15.70 13.91 5.54 0.08 -15.62 16 19 N -0.57 -14.53 5.29 -10.96 -0.06 -14.59 16 20 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 21 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.79 13.05 55.50 0.72 -24.06 16 24 Si 0.93 21.25 29.55 -169.99 -5.02 16.23 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 C -0.10 -0.81 7.22 -39.19 -0.28 -1.10 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.24 8.08 -51.93 -0.42 -0.18 16 31 H 0.07 0.23 8.08 -51.93 -0.42 -0.19 16 32 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 35 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 36 H 0.13 1.34 8.05 -52.49 -0.42 0.92 16 37 H 0.06 0.33 6.89 -51.93 -0.36 -0.03 16 38 H 0.08 0.51 8.04 -51.93 -0.42 0.09 16 39 H 0.08 0.50 5.82 -51.93 -0.30 0.20 16 40 H 0.09 1.05 8.07 -51.93 -0.42 0.63 16 41 H 0.09 1.28 5.77 -51.93 -0.30 0.98 16 42 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 43 H 0.07 0.93 7.93 -51.93 -0.41 0.51 16 44 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 45 H 0.10 2.01 5.82 -51.93 -0.30 1.70 16 46 H 0.06 0.99 6.47 -51.93 -0.34 0.66 16 47 H 0.05 0.83 8.12 -51.93 -0.42 0.41 16 48 H 0.09 1.45 7.93 -51.93 -0.41 1.04 16 49 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 50 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 51 H 0.14 0.86 5.30 -52.49 -0.28 0.58 16 LS Contribution 414.26 15.07 6.24 6.24 Total: -1.00 -34.19 414.26 -9.07 -43.25 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -8.01 Total: 8.16 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: -1.49 Total: 6.45 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -0.96 Total: -55.97 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: 0.16 Total: -24.37 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.19 -9.07 -43.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732597401.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.825 kcal (2) G-P(sol) polarization free energy of solvation -34.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds