Wall clock time and date at job start Wed Apr 1 2020 04:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38368 * 119.92452 * 2 1 4 4 C 1.38354 * 120.28853 * 179.97438 * 3 2 1 5 5 C 1.50705 * 119.92564 * 180.02562 * 4 3 2 6 6 C 1.37958 * 120.15014 * 0.02562 * 4 3 2 7 7 C 1.39579 * 119.85151 * 359.97438 * 6 4 3 8 8 C 1.47843 * 120.14444 * 179.72470 * 7 6 4 9 9 O 1.21546 * 120.00065 * 320.97631 * 8 7 6 10 10 N 1.34778 * 119.99874 * 140.97511 * 8 7 6 11 11 C 1.46500 * 119.99988 * 4.83489 * 10 8 7 12 12 C 1.46497 * 119.99750 * 184.84375 * 10 8 7 13 13 C 1.52991 * 109.47612 * 89.99851 * 12 10 8 14 14 N 1.46903 * 109.47198 * 180.02562 * 13 12 10 15 15 C 1.46897 * 111.00340 * 66.04406 * 14 13 12 16 16 C 1.46904 * 111.00003 * 190.00015 * 14 13 12 17 17 C 1.50692 * 109.47317 * 170.00011 * 16 14 13 18 18 O 1.21302 * 120.00006 * 359.97438 * 17 16 14 19 19 N 1.34780 * 120.00168 * 179.97438 * 17 16 14 20 20 C 1.37099 * 119.99766 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00230 * 359.97438 * 20 19 17 22 22 C 1.38948 * 119.99945 * 180.02562 * 20 19 17 23 23 N 1.31413 * 119.99917 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00427 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47008 * 89.99570 * 24 22 20 26 26 H 1.48495 * 109.47202 * 209.99746 * 24 22 20 27 27 H 1.48498 * 109.46884 * 329.99902 * 24 22 20 28 28 C 1.37951 * 119.93020 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47372 * 90.00400 * 1 2 3 30 30 H 1.09004 * 109.47423 * 209.99743 * 1 2 3 31 31 H 1.09000 * 109.47335 * 330.00343 * 1 2 3 32 32 H 1.07994 * 119.85380 * 359.95347 * 3 2 1 33 33 H 1.09001 * 109.46914 * 269.97957 * 5 4 3 34 34 H 1.09003 * 109.47172 * 29.97467 * 5 4 3 35 35 H 1.08995 * 109.47480 * 149.97993 * 5 4 3 36 36 H 1.07997 * 120.07648 * 179.97438 * 6 4 3 37 37 H 1.09000 * 109.46522 * 85.56872 * 11 10 8 38 38 H 1.08997 * 109.46806 * 205.56237 * 11 10 8 39 39 H 1.08999 * 109.47436 * 325.56706 * 11 10 8 40 40 H 1.09006 * 109.46791 * 210.00002 * 12 10 8 41 41 H 1.09002 * 109.47171 * 329.99477 * 12 10 8 42 42 H 1.09007 * 109.47245 * 299.99371 * 13 12 10 43 43 H 1.08995 * 109.47388 * 59.99891 * 13 12 10 44 44 H 1.09005 * 109.46946 * 60.00215 * 15 14 13 45 45 H 1.08994 * 109.47218 * 179.97438 * 15 14 13 46 46 H 1.08993 * 109.47136 * 300.00098 * 15 14 13 47 47 H 1.09003 * 109.47240 * 289.99582 * 16 14 13 48 48 H 1.08995 * 109.47440 * 49.99450 * 16 14 13 49 49 H 0.96994 * 120.00131 * 359.97438 * 19 17 16 50 50 H 0.97000 * 120.00517 * 180.02562 * 23 22 20 51 51 H 1.08000 * 120.07587 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1972 1.1992 0.0000 4 6 3.5807 1.2080 0.0005 5 6 4.3242 2.5189 0.0011 6 6 4.2812 0.0195 0.0005 7 6 3.5910 -1.1937 0.0005 8 6 4.3352 -2.4712 -0.0056 9 8 5.3449 -2.5832 -0.6729 10 7 3.8939 -3.5117 0.7287 11 6 2.6218 -3.4129 1.4487 12 6 4.6864 -4.7412 0.8071 13 6 5.6552 -4.6493 1.9877 14 7 6.4503 -5.8821 2.0658 15 6 7.3328 -6.0143 0.8990 16 6 7.2195 -5.9340 3.3163 17 6 7.8243 -7.3048 3.4775 18 8 7.6328 -8.1552 2.6340 19 7 8.5778 -7.5860 4.5590 20 6 9.1275 -8.8334 4.7059 21 1 8.9564 -9.5907 3.9553 22 6 9.9039 -9.1235 5.8211 23 7 10.1117 -8.2021 6.7348 24 14 10.6523 -10.8232 6.0218 25 1 11.9950 -10.8507 5.3881 26 1 10.7803 -11.1403 7.4668 27 1 9.7765 -11.8297 5.3698 28 6 2.1952 -1.1955 0.0005 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6536 2.1324 -0.0008 33 1 4.5042 2.8349 -1.0264 34 1 3.7289 3.2740 0.5145 35 1 5.2772 2.3959 0.5156 36 1 5.3611 0.0277 0.0005 37 1 1.8043 -3.6839 0.7805 38 1 2.6337 -4.0910 2.3019 39 1 2.4810 -2.3904 1.7990 40 1 4.0216 -5.5936 0.9482 41 1 5.2505 -4.8695 -0.1167 42 1 6.3200 -3.7970 1.8466 43 1 5.0912 -4.5211 2.9115 44 1 8.0118 -5.1625 0.8586 45 1 7.9102 -6.9349 0.9825 46 1 6.7317 -6.0431 -0.0098 47 1 8.0137 -5.1879 3.2856 48 1 6.5590 -5.7269 4.1581 49 1 8.7312 -6.9059 5.2334 50 1 10.6540 -8.4044 7.5132 51 1 1.6553 -2.1309 0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732597401.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:10 Heat of formation + Delta-G solvation = -56.059865 kcal Electronic energy + Delta-G solvation = -29744.807089 eV Core-core repulsion = 25643.529371 eV Total energy + Delta-G solvation = -4101.277718 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.61530 -40.42114 -39.75634 -38.14004 -36.65901 -35.84520 -34.47947 -33.40360 -33.26528 -31.00769 -29.22465 -28.23974 -28.08697 -27.38526 -27.07330 -25.89692 -23.97345 -22.31992 -21.66975 -21.02025 -20.28295 -19.85368 -18.13172 -17.88570 -17.66337 -17.28688 -16.82225 -16.60562 -16.54309 -16.28445 -15.90884 -15.60809 -15.34152 -15.07437 -14.85019 -14.71778 -14.35795 -14.21391 -14.08207 -14.01998 -13.91912 -13.76125 -13.46211 -13.38937 -13.15408 -13.06851 -13.01413 -12.76624 -12.64460 -12.57496 -12.49316 -12.40747 -12.38360 -12.11739 -11.93734 -11.89725 -11.46373 -11.02711 -10.35207 -10.00569 -9.88730 -9.71800 -9.54630 -9.32921 -8.46316 -5.95010 -0.07256 0.34085 1.37996 1.41647 1.54282 1.57110 1.85144 2.04360 2.29191 2.71422 2.79849 3.20037 3.36229 3.42513 3.80115 3.84049 3.88226 4.03093 4.08487 4.18793 4.26013 4.31984 4.33458 4.39463 4.42550 4.47050 4.50157 4.54852 4.59503 4.63015 4.66841 4.75902 4.79790 4.83205 4.89322 4.89633 4.91503 4.99664 5.13714 5.17011 5.28293 5.35271 5.39535 5.41611 5.50763 5.58864 5.80906 5.96053 6.00266 6.10019 6.24413 6.60507 6.98581 7.12933 7.55889 8.11682 8.71155 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022550 B = 0.001690 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.397539 B =16563.842701 C =16840.196883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.089 4.089 3 C -0.100 4.100 4 C -0.093 4.093 5 C -0.115 4.115 6 C -0.096 4.096 7 C -0.138 4.138 8 C 0.552 3.448 9 O -0.582 6.582 10 N -0.604 5.604 11 C 0.064 3.936 12 C 0.123 3.877 13 C 0.050 3.950 14 N -0.526 5.526 15 C 0.028 3.972 16 C 0.058 3.942 17 C 0.443 3.557 18 O -0.612 6.612 19 N -0.574 5.574 20 C -0.332 4.332 21 H 0.080 0.920 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.272 1.272 28 C -0.101 4.101 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.151 0.849 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.105 0.895 41 H 0.066 0.934 42 H 0.021 0.979 43 H 0.094 0.906 44 H 0.018 0.982 45 H 0.062 0.938 46 H 0.075 0.925 47 H 0.061 0.939 48 H 0.115 0.885 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.272 23.482 -9.584 33.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 C -0.118 4.118 4 C -0.093 4.093 5 C -0.171 4.171 6 C -0.115 4.115 7 C -0.141 4.141 8 C 0.342 3.658 9 O -0.463 6.463 10 N -0.335 5.335 11 C -0.077 4.077 12 C 0.000 4.000 13 C -0.078 4.078 14 N -0.251 5.251 15 C -0.120 4.120 16 C -0.074 4.074 17 C 0.230 3.770 18 O -0.498 6.498 19 N -0.211 5.211 20 C -0.461 4.461 21 H 0.098 0.902 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.818 3.182 25 H -0.198 1.198 26 H -0.195 1.195 27 H -0.197 1.197 28 C -0.119 4.119 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.169 0.831 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.130 0.870 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.104 0.896 40 H 0.123 0.877 41 H 0.085 0.915 42 H 0.039 0.961 43 H 0.112 0.888 44 H 0.036 0.964 45 H 0.081 0.919 46 H 0.094 0.906 47 H 0.079 0.921 48 H 0.133 0.867 49 H 0.229 0.771 50 H 0.087 0.913 51 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -22.117 22.430 -10.291 33.139 hybrid contribution 1.752 -0.023 0.469 1.814 sum -20.365 22.408 -9.821 31.832 Atomic orbital electron populations 1.20870 0.88388 1.04340 1.03375 1.20216 0.97888 0.92166 0.98591 1.21476 0.93060 0.99058 0.98219 1.20116 0.94617 0.95260 0.99286 1.20856 1.00107 0.92935 1.03212 1.21094 0.99765 0.91491 0.99157 1.19780 0.94959 0.92167 1.07187 1.18905 0.83814 0.84445 0.78676 1.90764 1.27882 1.83789 1.43825 1.47803 1.23275 1.14001 1.48423 1.22472 0.83291 1.04459 0.97497 1.21368 0.94346 0.86209 0.98118 1.22434 0.95768 0.89228 1.00402 1.61499 1.25795 1.36344 1.01428 1.22422 0.95903 1.00516 0.93119 1.21752 0.97803 0.93481 0.94314 1.20658 0.82541 0.90861 0.82942 1.90464 1.64567 1.50725 1.44052 1.41924 1.44981 1.13354 1.20878 1.19669 1.28883 0.90538 1.07057 0.90224 1.26050 0.97396 1.03215 0.94702 1.69675 1.39844 1.35367 1.11321 0.84914 0.78358 0.77207 0.77768 1.19779 1.19479 1.19716 1.21686 0.91585 1.00030 0.98576 0.90309 0.90139 0.90018 0.83090 0.90367 0.89447 0.91651 0.86996 0.89885 0.89134 0.89590 0.87680 0.91518 0.96060 0.88769 0.96356 0.91904 0.90617 0.92146 0.86719 0.77061 0.91322 0.83023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.55 10.01 71.23 0.71 0.16 16 2 C -0.09 -0.97 5.87 -19.90 -0.12 -1.09 16 3 C -0.10 -1.14 9.35 22.33 0.21 -0.93 16 4 C -0.09 -1.39 5.87 -19.90 -0.12 -1.51 16 5 C -0.11 -1.18 10.01 71.24 0.71 -0.46 16 6 C -0.10 -1.99 9.28 22.53 0.21 -1.78 16 7 C -0.14 -2.88 5.23 -20.09 -0.11 -2.99 16 8 C 0.55 14.53 7.35 86.79 0.64 15.17 16 9 O -0.58 -20.61 16.46 -3.86 -0.06 -20.67 16 10 N -0.60 -12.72 2.87 -850.23 -2.44 -15.16 16 11 C 0.06 0.75 8.88 127.77 1.13 1.88 16 12 C 0.12 3.02 5.35 86.38 0.46 3.48 16 13 C 0.05 1.37 5.28 86.30 0.46 1.83 16 14 N -0.53 -18.22 4.50 -927.08 -4.17 -22.39 16 15 C 0.03 1.04 8.96 127.69 1.14 2.18 16 16 C 0.06 2.11 5.45 85.55 0.47 2.58 16 17 C 0.44 21.65 7.47 87.65 0.66 22.30 16 18 O -0.61 -34.35 13.91 -3.10 -0.04 -34.40 16 19 N -0.57 -30.06 5.29 -306.98 -1.62 -31.69 16 20 C -0.33 -19.11 9.68 84.04 0.81 -18.30 16 21 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 22 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 23 N -0.92 -50.28 13.05 21.66 0.28 -49.99 16 24 Si 0.99 43.47 29.55 68.60 2.03 45.50 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 26 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 27 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 28 C -0.10 -1.42 7.22 22.53 0.16 -1.26 16 29 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.08 0.24 8.08 -2.38 -0.02 0.22 16 31 H 0.08 0.22 8.08 -2.39 -0.02 0.20 16 32 H 0.15 0.88 8.06 -2.91 -0.02 0.86 16 33 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.09 0.56 8.08 -2.39 -0.02 0.54 16 35 H 0.06 0.72 8.08 -2.39 -0.02 0.70 16 36 H 0.11 2.59 8.05 -2.91 -0.02 2.57 16 37 H 0.08 0.63 6.89 -2.39 -0.02 0.61 16 38 H 0.09 0.88 8.04 -2.39 -0.02 0.86 16 39 H 0.09 0.90 5.82 -2.39 -0.01 0.89 16 40 H 0.11 2.27 8.07 -2.38 -0.02 2.25 16 41 H 0.07 1.96 5.77 -2.39 -0.01 1.95 16 42 H 0.02 0.64 8.12 -2.38 -0.02 0.62 16 43 H 0.09 2.17 7.93 -2.39 -0.02 2.15 16 44 H 0.02 0.64 8.14 -2.38 -0.02 0.62 16 45 H 0.06 2.73 5.82 -2.39 -0.01 2.71 16 46 H 0.08 2.50 6.47 -2.39 -0.02 2.49 16 47 H 0.06 2.08 8.12 -2.39 -0.02 2.06 16 48 H 0.11 3.59 7.93 -2.39 -0.02 3.57 16 49 H 0.40 19.71 7.90 -92.71 -0.73 18.97 16 50 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 51 H 0.15 1.51 5.30 -2.91 -0.02 1.49 16 Total: -1.00 -76.89 414.26 2.08 -74.81 By element: Atomic # 1 Polarization: 32.80 SS G_CDS: 0.21 Total: 33.01 kcal Atomic # 6 Polarization: 13.08 SS G_CDS: 7.90 Total: 20.98 kcal Atomic # 7 Polarization: -111.28 SS G_CDS: -7.95 Total: -119.23 kcal Atomic # 8 Polarization: -54.96 SS G_CDS: -0.11 Total: -55.07 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -76.89 2.08 -74.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732597401.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.748 kcal (2) G-P(sol) polarization free energy of solvation -76.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds