Wall clock time and date at job start Wed Apr 1 2020 04:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38231 * 119.99677 * 2 1 4 4 C 1.38237 * 119.99667 * 180.23587 * 3 2 1 5 5 C 1.38228 * 120.00097 * 359.48657 * 4 3 2 6 6 C 1.50699 * 120.00281 * 180.27989 * 5 4 3 7 7 C 1.50701 * 109.47334 * 89.99699 * 6 5 4 8 8 O 1.21283 * 120.00046 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00142 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99966 * 179.97438 * 9 7 6 11 11 H 1.08994 * 109.47144 * 322.99581 * 10 9 7 12 12 C 1.53009 * 109.46939 * 82.99306 * 10 9 7 13 13 C 1.53005 * 109.47258 * 202.98837 * 10 9 7 14 14 N 1.46901 * 109.46766 * 55.16593 * 13 10 9 15 15 C 1.46902 * 110.99819 * 198.92497 * 14 13 10 16 16 C 1.46897 * 110.99921 * 74.97450 * 14 13 10 17 17 C 1.50702 * 109.47067 * 189.99993 * 16 14 13 18 18 O 1.21287 * 120.00209 * 359.97438 * 17 16 14 19 19 N 1.34779 * 119.99550 * 180.02562 * 17 16 14 20 20 C 1.37105 * 119.99413 * 179.97438 * 19 17 16 21 21 H 1.07995 * 120.00220 * 359.97438 * 20 19 17 22 22 C 1.38956 * 119.99583 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00240 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99547 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46866 * 90.00208 * 24 22 20 26 26 H 1.48493 * 109.46745 * 209.99818 * 24 22 20 27 27 H 1.48494 * 109.47367 * 330.00160 * 24 22 20 28 28 C 1.38239 * 120.00081 * 0.25393 * 5 4 3 29 29 C 1.38233 * 119.99890 * 179.71739 * 2 1 3 30 30 H 1.09002 * 109.47084 * 270.27531 * 1 2 3 31 31 H 1.08998 * 109.47446 * 30.28232 * 1 2 3 32 32 H 1.09002 * 109.46958 * 150.28162 * 1 2 3 33 33 H 1.07994 * 120.00179 * 359.97438 * 3 2 1 34 34 H 1.08002 * 119.99848 * 179.76235 * 4 3 2 35 35 H 1.09001 * 109.47735 * 209.99640 * 6 5 4 36 36 H 1.09004 * 109.47074 * 329.99993 * 6 5 4 37 37 H 0.97006 * 120.00036 * 359.97438 * 9 7 6 38 38 H 1.09003 * 109.47145 * 59.99560 * 12 10 9 39 39 H 1.08993 * 109.47293 * 179.97438 * 12 10 9 40 40 H 1.09001 * 109.46460 * 300.00240 * 12 10 9 41 41 H 1.08991 * 109.46842 * 175.16556 * 13 10 9 42 42 H 1.09002 * 109.46952 * 295.16714 * 13 10 9 43 43 H 1.08997 * 109.46772 * 54.12820 * 15 14 13 44 44 H 1.09009 * 109.46626 * 174.11893 * 15 14 13 45 45 H 1.08992 * 109.47468 * 294.12262 * 15 14 13 46 46 H 1.09002 * 109.47027 * 309.99834 * 16 14 13 47 47 H 1.08996 * 109.47258 * 69.99661 * 16 14 13 48 48 H 0.96994 * 120.00645 * 359.97438 * 19 17 16 49 49 H 0.96993 * 119.99841 * 180.02562 * 23 22 20 50 50 H 1.07997 * 120.00166 * 180.02562 * 28 5 4 51 51 H 1.07998 * 120.00115 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 -0.0049 5 6 4.2717 0.0001 0.0009 6 6 5.7787 0.0001 0.0019 7 6 6.2801 0.0065 1.4230 8 8 5.4914 0.0102 2.3443 9 7 7.6050 0.0081 1.6701 10 6 8.0925 0.0149 3.0517 11 1 7.4392 0.6362 3.6643 12 6 8.0966 -1.4143 3.5980 13 6 9.5143 0.5790 3.0881 14 7 9.5310 1.9058 2.4578 15 6 10.8952 2.2860 2.0675 16 6 8.9355 2.9162 3.3423 17 6 8.7449 4.2019 2.5795 18 8 9.0732 4.2699 1.4139 19 7 8.2105 5.2764 3.1929 20 6 8.0376 6.4462 2.4990 21 1 8.3299 6.5067 1.4611 22 6 7.4871 7.5543 3.1315 23 7 7.1318 7.4808 4.3946 24 14 7.2522 9.1483 2.1863 25 1 5.9097 9.1541 1.5516 26 1 7.3634 10.2980 3.1195 27 1 8.2965 9.2599 1.1366 28 6 3.5806 -1.1971 0.0063 29 6 2.1982 -1.1971 0.0059 30 1 -0.3633 0.0049 1.0277 31 1 -0.3634 0.8874 -0.5182 32 1 -0.3633 -0.8925 -0.5095 33 1 1.6582 2.1324 -0.0004 34 1 4.1205 2.1325 -0.0088 35 1 6.1425 -0.8922 -0.5077 36 1 6.1424 0.8878 -0.5157 37 1 8.2359 0.0048 0.9332 38 1 8.7498 -2.0356 2.9852 39 1 8.4597 -1.4094 4.6257 40 1 7.0837 -1.8161 3.5720 41 1 9.8448 0.6642 4.1232 42 1 10.1841 -0.0890 2.5466 43 1 11.3248 1.5046 1.4408 44 1 10.8660 3.2230 1.5111 45 1 11.5067 2.4128 2.9608 46 1 7.9700 2.5606 3.7020 47 1 9.5970 3.0917 4.1906 48 1 7.9482 5.2222 4.1251 49 1 6.7472 8.2541 4.8359 50 1 4.1206 -2.1324 0.0112 51 1 1.6582 -2.1324 0.0101 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733045971.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:46 Heat of formation + Delta-G solvation = -51.537499 kcal Electronic energy + Delta-G solvation = -30565.599249 eV Core-core repulsion = 26464.517636 eV Total energy + Delta-G solvation = -4101.081614 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.06180 -39.09606 -38.46487 -36.86749 -34.68040 -33.76691 -33.73132 -31.29843 -31.22165 -30.87014 -29.32072 -28.04162 -26.94102 -25.47185 -24.68436 -22.69045 -22.60579 -21.44521 -20.58155 -20.12271 -19.10420 -17.83115 -17.05812 -16.46747 -16.12984 -15.80881 -15.66729 -15.24074 -15.03993 -14.69434 -14.48963 -14.41888 -13.97815 -13.84011 -13.66938 -13.52642 -13.44905 -13.36751 -12.95133 -12.73600 -12.66408 -12.33977 -12.13937 -12.03095 -11.87688 -11.83303 -11.71057 -11.47606 -11.40108 -11.21398 -11.10748 -11.02174 -10.90560 -10.61433 -10.38597 -10.20447 -9.68071 -9.46031 -8.86773 -8.83670 -8.47370 -8.43449 -7.97298 -7.86443 -6.39712 -3.80571 1.34276 1.48285 2.86862 3.18758 3.27221 3.31496 3.32946 3.85020 3.92228 4.00478 4.24523 4.66546 4.74047 4.78305 4.92471 5.01596 5.04798 5.10611 5.11921 5.21008 5.25569 5.31343 5.40157 5.43385 5.47569 5.49216 5.56251 5.57565 5.64001 5.67690 5.72612 5.74899 5.75811 5.90973 5.98615 6.03925 6.11211 6.12509 6.14910 6.29719 6.44273 6.50843 6.62204 6.65948 6.67882 7.06052 7.23053 7.34263 7.56608 7.73379 8.07919 8.46546 8.63575 9.19785 9.56573 10.08114 10.78079 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007283 B = 0.003214 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3843.387151 B = 8710.497803 C =11710.358858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.092 4.092 3 C -0.118 4.118 4 C -0.097 4.097 5 C -0.066 4.066 6 C -0.104 4.104 7 C 0.518 3.482 8 O -0.538 6.538 9 N -0.707 5.707 10 C 0.147 3.853 11 H 0.085 0.915 12 C -0.161 4.161 13 C 0.043 3.957 14 N -0.515 5.515 15 C 0.023 3.977 16 C 0.044 3.956 17 C 0.446 3.554 18 O -0.579 6.579 19 N -0.564 5.564 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.929 3.071 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C -0.104 4.104 29 C -0.123 4.123 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.403 0.597 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.048 0.952 42 H 0.078 0.922 43 H 0.058 0.942 44 H 0.097 0.903 45 H 0.014 0.986 46 H 0.086 0.914 47 H 0.047 0.953 48 H 0.392 0.608 49 H 0.271 0.729 50 H 0.117 0.883 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.080 -19.487 -5.364 20.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.092 4.092 3 C -0.136 4.136 4 C -0.115 4.115 5 C -0.067 4.067 6 C -0.143 4.143 7 C 0.304 3.696 8 O -0.415 6.415 9 N -0.358 5.358 10 C 0.042 3.958 11 H 0.103 0.897 12 C -0.219 4.219 13 C -0.086 4.086 14 N -0.238 5.238 15 C -0.125 4.125 16 C -0.088 4.088 17 C 0.231 3.769 18 O -0.463 6.463 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.542 5.542 24 Si 0.756 3.244 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.194 1.194 28 C -0.122 4.122 29 C -0.141 4.141 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.116 0.884 36 H 0.124 0.876 37 H 0.237 0.763 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.096 0.904 43 H 0.076 0.924 44 H 0.116 0.884 45 H 0.033 0.967 46 H 0.105 0.895 47 H 0.065 0.935 48 H 0.225 0.775 49 H 0.081 0.919 50 H 0.135 0.865 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.779 -19.294 -5.776 20.491 hybrid contribution 0.565 0.914 0.754 1.313 sum -3.215 -18.379 -5.022 19.322 Atomic orbital electron populations 1.20775 0.91473 1.02463 1.02239 1.19888 0.95892 0.93303 1.00103 1.21003 0.94148 0.97518 1.00971 1.21075 0.94288 0.97753 0.98413 1.19260 0.93674 0.93498 1.00253 1.20670 0.93209 1.05243 0.95218 1.20416 0.82302 0.75867 0.91053 1.90711 1.55272 1.49280 1.46236 1.45751 1.06663 1.74912 1.08470 1.20908 0.94988 0.96181 0.83745 0.89697 1.22142 1.02560 0.96344 1.00898 1.22493 0.96020 0.91592 0.98515 1.61558 1.20862 1.00344 1.41084 1.22556 0.87030 1.03614 0.99308 1.21929 1.00155 0.92734 0.93938 1.19682 0.84317 0.84641 0.88212 1.90460 1.55028 1.83963 1.16884 1.41872 1.54678 1.10084 1.13420 1.19675 1.38476 0.87506 0.97126 0.87961 1.25260 0.97075 0.99732 0.95871 1.69613 1.42598 1.31801 1.10227 0.85873 0.78869 0.80651 0.78987 1.20389 1.20955 1.19445 1.20898 0.94163 0.97178 0.99942 1.20906 0.94045 0.97304 1.01882 0.91286 0.91646 0.91805 0.86109 0.85847 0.88360 0.87608 0.76305 0.92572 0.91810 0.91862 0.93421 0.90359 0.92355 0.88428 0.96729 0.89545 0.93512 0.77539 0.91882 0.86498 0.86414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 10.01 36.01 0.36 -0.63 16 2 C -0.09 -1.08 5.88 -104.62 -0.62 -1.69 16 3 C -0.12 -1.53 9.70 -39.58 -0.38 -1.91 16 4 C -0.10 -1.36 9.70 -39.59 -0.38 -1.75 16 5 C -0.07 -0.87 4.37 -104.63 -0.46 -1.33 16 6 C -0.10 -1.19 5.83 -29.04 -0.17 -1.36 16 7 C 0.52 7.39 7.76 -10.99 -0.09 7.30 16 8 O -0.54 -9.82 15.72 5.56 0.09 -9.73 16 9 N -0.71 -8.71 4.83 -53.80 -0.26 -8.97 16 10 C 0.15 1.80 2.55 -67.92 -0.17 1.63 16 11 H 0.09 1.29 6.41 -51.93 -0.33 0.95 16 12 C -0.16 -1.62 9.46 37.16 0.35 -1.27 16 13 C 0.04 0.49 4.54 -3.82 -0.02 0.48 16 14 N -0.51 -7.93 4.16 -244.37 -1.02 -8.95 16 15 C 0.02 0.34 9.17 60.07 0.55 0.89 16 16 C 0.04 0.79 5.28 -4.98 -0.03 0.76 16 17 C 0.45 10.49 7.52 -10.98 -0.08 10.41 16 18 O -0.58 -15.18 13.88 5.55 0.08 -15.11 16 19 N -0.56 -14.46 5.29 -10.96 -0.06 -14.52 16 20 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 21 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.86 13.05 55.50 0.72 -24.13 16 24 Si 0.93 21.20 29.55 -169.99 -5.02 16.18 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 27 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 28 C -0.10 -1.25 9.70 -39.58 -0.38 -1.63 16 29 C -0.12 -1.41 9.70 -39.58 -0.38 -1.79 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 32 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 33 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 35 H 0.10 0.83 8.09 -51.93 -0.42 0.41 16 36 H 0.11 1.18 8.09 -51.93 -0.42 0.76 16 37 H 0.40 4.26 8.59 -40.82 -0.35 3.91 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 41 H 0.05 0.52 8.01 -51.93 -0.42 0.10 16 42 H 0.08 0.75 7.81 -51.93 -0.41 0.35 16 43 H 0.06 0.72 7.94 -51.93 -0.41 0.30 16 44 H 0.10 1.83 5.92 -51.92 -0.31 1.52 16 45 H 0.01 0.20 8.13 -51.93 -0.42 -0.22 16 46 H 0.09 1.53 6.66 -51.93 -0.35 1.18 16 47 H 0.05 0.78 8.11 -51.93 -0.42 0.36 16 48 H 0.39 9.75 7.90 -40.82 -0.32 9.43 16 49 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 50 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 51 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 LS Contribution 422.22 15.07 6.36 6.36 Total: -1.00 -33.82 422.22 -9.56 -43.38 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: -8.31 Total: 15.36 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -2.14 Total: 0.12 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: -0.61 Total: -56.56 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: 0.16 Total: -24.84 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -33.82 -9.56 -43.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733045971.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.158 kcal (2) G-P(sol) polarization free energy of solvation -33.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds