Wall clock time and date at job start Wed Apr 1 2020 05:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21281 * 120.00553 * 2 1 4 4 N 1.34783 * 119.99589 * 179.97438 * 2 1 3 5 5 C 1.39956 * 119.99581 * 175.75225 * 4 2 1 6 6 C 1.38983 * 120.00098 * 30.68280 * 5 4 2 7 7 C 1.38209 * 120.22432 * 179.97438 * 6 5 4 8 8 C 1.38026 * 120.22139 * 359.97438 * 7 6 5 9 9 C 1.39573 * 119.99600 * 359.97438 * 8 7 6 10 10 C 1.47860 * 120.10800 * 180.27599 * 9 8 7 11 11 O 1.21554 * 119.99884 * 132.31848 * 10 9 8 12 12 N 1.34768 * 120.00379 * 312.31271 * 10 9 8 13 13 C 1.46502 * 119.99882 * 3.30151 * 12 10 9 14 14 C 1.46496 * 120.00688 * 183.30170 * 12 10 9 15 15 C 1.53002 * 109.47314 * 89.99487 * 14 12 10 16 16 C 1.53001 * 109.47330 * 180.02562 * 15 14 12 17 17 N 1.46502 * 109.47119 * 180.02562 * 16 15 14 18 18 C 1.46495 * 119.99718 * 90.00137 * 17 16 15 19 19 C 1.36934 * 119.99881 * 270.00262 * 17 16 15 20 20 H 1.08005 * 120.00314 * 25.22403 * 19 17 16 21 21 C 1.38817 * 119.99942 * 205.22878 * 19 17 16 22 22 N 1.31617 * 119.99871 * 9.02140 * 21 19 17 23 23 Si 1.86802 * 119.99715 * 189.02421 * 21 19 17 24 24 H 1.48493 * 109.47295 * 90.00237 * 23 21 19 25 25 H 1.48500 * 109.46681 * 209.99835 * 23 21 19 26 26 H 1.48498 * 109.47038 * 329.99510 * 23 21 19 27 27 C 1.38597 * 119.99820 * 210.65348 * 5 4 2 28 28 C 1.50700 * 120.10976 * 0.05120 * 27 5 4 29 29 H 1.08995 * 109.47415 * 270.00433 * 1 2 3 30 30 H 1.09008 * 109.46728 * 30.00251 * 1 2 3 31 31 H 1.08995 * 109.47130 * 149.99864 * 1 2 3 32 32 H 0.96998 * 120.00226 * 355.75281 * 4 2 1 33 33 H 1.08004 * 119.89078 * 359.97438 * 6 5 4 34 34 H 1.08007 * 119.89121 * 179.97438 * 7 6 5 35 35 H 1.08005 * 119.99919 * 180.02562 * 8 7 6 36 36 H 1.08999 * 109.47143 * 90.87739 * 13 12 10 37 37 H 1.09002 * 109.47373 * 210.88334 * 13 12 10 38 38 H 1.09003 * 109.47191 * 330.87483 * 13 12 10 39 39 H 1.08992 * 109.47887 * 210.00205 * 14 12 10 40 40 H 1.09002 * 109.46491 * 330.00318 * 14 12 10 41 41 H 1.09001 * 109.47012 * 300.01075 * 15 14 12 42 42 H 1.09002 * 109.46664 * 60.00936 * 15 14 12 43 43 H 1.08993 * 109.47117 * 300.00478 * 16 15 14 44 44 H 1.09002 * 109.46727 * 60.00675 * 16 15 14 45 45 H 1.09005 * 109.46755 * 93.92855 * 18 17 16 46 46 H 1.09001 * 109.46859 * 213.92373 * 18 17 16 47 47 H 1.08995 * 109.47440 * 333.92371 * 18 17 16 48 48 H 0.97001 * 119.99968 * 180.02562 * 22 21 19 49 49 H 1.09003 * 109.47237 * 273.94572 * 28 27 5 50 50 H 1.09001 * 109.47460 * 33.94301 * 28 27 5 51 51 H 1.08995 * 109.47197 * 153.94124 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.5775 -1.1690 -0.0893 6 6 4.3092 -0.1124 0.4399 7 6 5.6886 -0.1096 0.3542 8 6 6.3489 -1.1564 -0.2569 9 6 5.6233 -2.2227 -0.7904 10 6 6.3284 -3.3482 -1.4402 11 8 6.0366 -4.4935 -1.1560 12 7 7.2946 -3.1044 -2.3476 13 6 7.6965 -1.7257 -2.6372 14 6 7.9430 -4.2180 -3.0445 15 6 7.1728 -4.5342 -4.3282 16 6 7.8496 -5.6976 -5.0557 17 7 7.1124 -5.9999 -6.2851 18 6 7.4706 -5.3295 -7.5375 19 6 6.0887 -6.9090 -6.2636 20 1 5.5534 -7.0979 -5.3447 21 6 5.7389 -7.5880 -7.4227 22 7 6.4971 -7.4944 -8.4944 23 14 4.1919 -8.6344 -7.4614 24 1 3.0422 -7.8023 -7.8983 25 1 4.3788 -9.7590 -8.4130 26 1 3.9251 -9.1738 -6.1038 27 6 4.2310 -2.2246 -0.7053 28 6 3.4401 -3.3713 -1.2803 29 1 -0.3634 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8899 -0.5138 32 1 1.6978 -2.0061 0.0631 33 1 3.7981 0.7092 0.9196 34 1 6.2519 0.7144 0.7669 35 1 7.4270 -1.1507 -0.3214 36 1 8.5161 -1.4401 -1.9778 37 1 8.0224 -1.6525 -3.6748 38 1 6.8499 -1.0587 -2.4745 39 1 8.9678 -3.9433 -3.2940 40 1 7.9492 -5.0963 -2.3989 41 1 6.1479 -4.8089 -4.0786 42 1 7.1666 -3.6559 -4.9737 43 1 8.8745 -5.4231 -5.3051 44 1 7.8555 -6.5757 -4.4099 45 1 8.1720 -5.9508 -8.0944 46 1 6.5725 -5.1709 -8.1344 47 1 7.9337 -4.3681 -7.3154 48 1 6.2525 -7.9685 -9.3045 49 1 3.2457 -4.1064 -0.4993 50 1 2.4936 -2.9993 -1.6727 51 1 4.0087 -3.8376 -2.0848 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733777749.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:19 Heat of formation + Delta-G solvation = -15.683925 kcal Electronic energy + Delta-G solvation = -30633.817743 eV Core-core repulsion = 26534.290857 eV Total energy + Delta-G solvation = -4099.526886 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.16225 -40.07578 -38.30587 -36.26888 -35.47825 -35.08682 -32.78214 -32.42023 -31.34883 -30.21164 -29.06504 -27.27483 -26.89614 -25.90320 -25.43646 -23.75599 -22.43942 -21.55019 -21.05321 -20.17759 -19.37339 -18.16326 -17.45366 -16.70768 -16.38552 -16.24086 -16.12882 -15.70124 -15.38150 -14.78758 -14.73645 -14.41047 -14.13457 -13.93780 -13.79048 -13.50395 -13.22326 -13.16454 -13.10280 -12.83374 -12.77433 -12.62301 -12.53256 -12.41804 -12.06428 -11.86135 -11.68629 -11.58777 -11.23936 -10.90517 -10.80250 -10.73654 -10.67513 -10.39252 -10.23397 -10.12995 -9.83631 -9.76097 -9.68927 -8.96535 -8.64288 -8.43995 -8.38590 -6.63693 -5.66041 -3.14598 0.80602 0.97582 2.13202 2.59524 2.76084 3.05424 3.41786 3.47606 3.49975 3.54868 4.24485 4.35773 4.55272 4.55881 4.71345 4.72707 4.84423 4.88384 5.05807 5.12459 5.18421 5.25729 5.32835 5.36127 5.44948 5.47773 5.51761 5.54422 5.56017 5.62644 5.83106 5.90529 6.01244 6.03464 6.07800 6.12824 6.19175 6.20498 6.21600 6.50911 6.65199 6.69763 6.80594 6.88093 6.95564 7.07707 7.38972 7.44265 7.65553 7.78877 7.87767 8.18319 8.48670 9.31731 9.94381 10.44282 11.38909 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011355 B = 0.002523 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.299187 B =11095.537458 C =12716.375344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.511 3.489 3 O -0.528 6.528 4 N -0.669 5.669 5 C 0.134 3.866 6 C -0.105 4.105 7 C -0.115 4.115 8 C -0.102 4.102 9 C -0.108 4.108 10 C 0.558 3.442 11 O -0.525 6.525 12 N -0.607 5.607 13 C 0.073 3.927 14 C 0.116 3.884 15 C -0.150 4.150 16 C 0.156 3.844 17 N -0.604 5.604 18 C 0.165 3.835 19 C -0.250 4.250 20 H 0.067 0.933 21 C 0.000 4.000 22 N -0.911 5.911 23 Si 0.904 3.096 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.279 1.279 27 C -0.059 4.059 28 C -0.119 4.119 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.413 0.587 33 H 0.147 0.853 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.034 0.966 44 H 0.048 0.952 45 H 0.029 0.971 46 H 0.041 0.959 47 H -0.006 1.006 48 H 0.251 0.749 49 H 0.080 0.920 50 H 0.063 0.937 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.316 17.649 19.515 26.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.300 3.700 3 O -0.404 6.404 4 N -0.314 5.314 5 C 0.040 3.960 6 C -0.125 4.125 7 C -0.133 4.133 8 C -0.121 4.121 9 C -0.112 4.112 10 C 0.346 3.654 11 O -0.402 6.402 12 N -0.340 5.340 13 C -0.070 4.070 14 C -0.007 4.007 15 C -0.192 4.192 16 C 0.027 3.973 17 N -0.326 5.326 18 C 0.020 3.980 19 C -0.380 4.380 20 H 0.085 0.915 21 C -0.197 4.197 22 N -0.556 5.556 23 Si 0.734 3.266 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.204 1.204 27 C -0.062 4.062 28 C -0.175 4.175 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.103 0.897 32 H 0.250 0.750 33 H 0.165 0.835 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.053 0.947 44 H 0.066 0.934 45 H 0.047 0.953 46 H 0.060 0.940 47 H 0.013 0.987 48 H 0.062 0.938 49 H 0.098 0.902 50 H 0.082 0.918 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.122 17.705 19.443 26.791 hybrid contribution -1.052 -0.858 -0.222 1.376 sum -6.174 16.847 19.221 26.294 Atomic orbital electron populations 1.21906 0.90492 1.05583 1.05202 1.21045 0.90987 0.83005 0.74972 1.90698 1.70291 1.31390 1.47972 1.43627 1.05109 1.10176 1.72529 1.17447 0.82612 0.96411 0.99559 1.21538 0.93919 0.98552 0.98523 1.20977 0.93896 0.98580 0.99871 1.21363 1.00169 0.92651 0.97906 1.19593 0.92935 0.95830 1.02839 1.18257 0.79494 0.88446 0.79202 1.90809 1.64588 1.22111 1.62688 1.47841 1.37917 1.07885 1.40310 1.21993 1.00573 0.82512 1.01907 1.21630 0.95704 0.89005 0.94314 1.22609 1.01033 1.00763 0.94751 1.20628 0.93024 0.94718 0.88888 1.43865 1.37838 1.47016 1.03920 1.20768 0.98888 0.90877 0.87468 1.19206 1.07728 1.14877 0.96215 0.91550 1.25092 0.98918 0.98574 0.97153 1.70052 1.37391 1.45636 1.02563 0.86249 0.83031 0.79885 0.77398 1.21577 1.21723 1.20406 1.19642 0.92670 0.96465 0.97391 1.20826 0.99243 0.95472 1.02006 0.88390 0.88292 0.89691 0.74993 0.83533 0.85135 0.85138 0.92554 0.90756 0.90658 0.90774 0.89809 0.91921 0.92896 0.94737 0.93398 0.95302 0.94046 0.98732 0.93845 0.90181 0.91842 0.90041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.71 10.31 36.01 0.37 -0.34 16 2 C 0.51 4.33 7.80 -10.98 -0.09 4.24 16 3 O -0.53 -6.47 14.27 5.56 0.08 -6.39 16 4 N -0.67 -5.44 4.86 -9.89 -0.05 -5.49 16 5 C 0.13 1.45 6.35 -83.74 -0.53 0.92 16 6 C -0.11 -1.13 8.73 -39.32 -0.34 -1.47 16 7 C -0.11 -1.07 10.02 -39.67 -0.40 -1.47 16 8 C -0.10 -1.02 7.66 -39.16 -0.30 -1.32 16 9 C -0.11 -1.36 4.91 -104.99 -0.52 -1.88 16 10 C 0.56 8.36 6.36 -12.33 -0.08 8.28 16 11 O -0.53 -9.66 15.05 5.32 0.08 -9.58 16 12 N -0.61 -8.12 2.87 -182.69 -0.52 -8.65 16 13 C 0.07 0.71 9.05 59.85 0.54 1.25 16 14 C 0.12 1.69 5.44 -4.04 -0.02 1.67 16 15 C -0.15 -2.73 5.86 -26.73 -0.16 -2.88 16 16 C 0.16 3.27 5.65 -4.04 -0.02 3.25 16 17 N -0.60 -15.74 2.92 -181.12 -0.53 -16.27 16 18 C 0.16 4.18 8.96 59.84 0.54 4.71 16 19 C -0.25 -7.15 9.65 -15.06 -0.15 -7.29 16 20 H 0.07 1.88 7.84 -52.48 -0.41 1.47 16 21 C 0.00 0.01 5.17 -17.43 -0.09 -0.08 16 22 N -0.91 -27.26 10.64 55.49 0.59 -26.67 16 23 Si 0.90 22.49 29.56 -169.99 -5.03 17.46 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 27 C -0.06 -0.71 5.93 -104.02 -0.62 -1.32 16 28 C -0.12 -1.39 8.46 36.01 0.30 -1.09 16 29 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.10 0.42 8.14 -51.92 -0.42 0.00 16 31 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.41 2.24 7.74 -40.82 -0.32 1.92 16 33 H 0.15 1.63 5.88 -52.48 -0.31 1.32 16 34 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 35 H 0.13 1.06 6.37 -52.48 -0.33 0.73 16 36 H 0.06 0.42 7.36 -51.93 -0.38 0.04 16 37 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 38 H 0.07 0.72 5.86 -51.93 -0.30 0.41 16 39 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16 40 H 0.08 1.33 7.38 -51.93 -0.38 0.95 16 41 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 44 H 0.05 1.03 8.04 -51.93 -0.42 0.61 16 45 H 0.03 0.78 7.38 -51.93 -0.38 0.40 16 46 H 0.04 1.12 7.30 -51.93 -0.38 0.75 16 47 H -0.01 -0.13 8.04 -51.93 -0.42 -0.55 16 48 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 49 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.06 0.60 7.31 -51.93 -0.38 0.22 16 51 H 0.08 1.20 6.46 -51.93 -0.34 0.87 16 LS Contribution 410.22 15.07 6.18 6.18 Total: -1.00 -36.33 410.22 -8.85 -45.18 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -8.10 Total: -0.95 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -1.55 Total: 5.17 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: -0.51 Total: -57.08 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: 0.16 Total: -15.97 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.03 Total: 17.46 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -36.33 -8.85 -45.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733777749.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.501 kcal (2) G-P(sol) polarization free energy of solvation -36.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds