Wall clock time and date at job start Wed Apr 1 2020 05:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21281 * 120.00553 * 2 1 4 4 N 1.34783 * 119.99589 * 179.97438 * 2 1 3 5 5 C 1.39956 * 119.99581 * 175.75225 * 4 2 1 6 6 C 1.38983 * 120.00098 * 30.68280 * 5 4 2 7 7 C 1.38209 * 120.22432 * 179.97438 * 6 5 4 8 8 C 1.38026 * 120.22139 * 359.97438 * 7 6 5 9 9 C 1.39573 * 119.99600 * 359.97438 * 8 7 6 10 10 C 1.47860 * 120.10800 * 180.27599 * 9 8 7 11 11 O 1.21554 * 119.99884 * 132.31848 * 10 9 8 12 12 N 1.34768 * 120.00379 * 312.31271 * 10 9 8 13 13 C 1.46502 * 119.99882 * 3.30151 * 12 10 9 14 14 C 1.46496 * 120.00688 * 183.30170 * 12 10 9 15 15 C 1.53002 * 109.47314 * 89.99487 * 14 12 10 16 16 C 1.53001 * 109.47330 * 180.02562 * 15 14 12 17 17 N 1.46502 * 109.47119 * 180.02562 * 16 15 14 18 18 C 1.46495 * 119.99718 * 90.00137 * 17 16 15 19 19 C 1.36934 * 119.99881 * 270.00262 * 17 16 15 20 20 H 1.08005 * 120.00314 * 25.22403 * 19 17 16 21 21 C 1.38817 * 119.99942 * 205.22878 * 19 17 16 22 22 N 1.31617 * 119.99871 * 9.02140 * 21 19 17 23 23 Si 1.86802 * 119.99715 * 189.02421 * 21 19 17 24 24 H 1.48493 * 109.47295 * 90.00237 * 23 21 19 25 25 H 1.48500 * 109.46681 * 209.99835 * 23 21 19 26 26 H 1.48498 * 109.47038 * 329.99510 * 23 21 19 27 27 C 1.38597 * 119.99820 * 210.65348 * 5 4 2 28 28 C 1.50700 * 120.10976 * 0.05120 * 27 5 4 29 29 H 1.08995 * 109.47415 * 270.00433 * 1 2 3 30 30 H 1.09008 * 109.46728 * 30.00251 * 1 2 3 31 31 H 1.08995 * 109.47130 * 149.99864 * 1 2 3 32 32 H 0.96998 * 120.00226 * 355.75281 * 4 2 1 33 33 H 1.08004 * 119.89078 * 359.97438 * 6 5 4 34 34 H 1.08007 * 119.89121 * 179.97438 * 7 6 5 35 35 H 1.08005 * 119.99919 * 180.02562 * 8 7 6 36 36 H 1.08999 * 109.47143 * 90.87739 * 13 12 10 37 37 H 1.09002 * 109.47373 * 210.88334 * 13 12 10 38 38 H 1.09003 * 109.47191 * 330.87483 * 13 12 10 39 39 H 1.08992 * 109.47887 * 210.00205 * 14 12 10 40 40 H 1.09002 * 109.46491 * 330.00318 * 14 12 10 41 41 H 1.09001 * 109.47012 * 300.01075 * 15 14 12 42 42 H 1.09002 * 109.46664 * 60.00936 * 15 14 12 43 43 H 1.08993 * 109.47117 * 300.00478 * 16 15 14 44 44 H 1.09002 * 109.46727 * 60.00675 * 16 15 14 45 45 H 1.09005 * 109.46755 * 93.92855 * 18 17 16 46 46 H 1.09001 * 109.46859 * 213.92373 * 18 17 16 47 47 H 1.08995 * 109.47440 * 333.92371 * 18 17 16 48 48 H 0.97001 * 119.99968 * 180.02562 * 22 21 19 49 49 H 1.09003 * 109.47237 * 273.94572 * 28 27 5 50 50 H 1.09001 * 109.47460 * 33.94301 * 28 27 5 51 51 H 1.08995 * 109.47197 * 153.94124 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.5775 -1.1690 -0.0893 6 6 4.3092 -0.1124 0.4399 7 6 5.6886 -0.1096 0.3542 8 6 6.3489 -1.1564 -0.2569 9 6 5.6233 -2.2227 -0.7904 10 6 6.3284 -3.3482 -1.4402 11 8 6.0366 -4.4935 -1.1560 12 7 7.2946 -3.1044 -2.3476 13 6 7.6965 -1.7257 -2.6372 14 6 7.9430 -4.2180 -3.0445 15 6 7.1728 -4.5342 -4.3282 16 6 7.8496 -5.6976 -5.0557 17 7 7.1124 -5.9999 -6.2851 18 6 7.4706 -5.3295 -7.5375 19 6 6.0887 -6.9090 -6.2636 20 1 5.5534 -7.0979 -5.3447 21 6 5.7389 -7.5880 -7.4227 22 7 6.4971 -7.4944 -8.4944 23 14 4.1919 -8.6344 -7.4614 24 1 3.0422 -7.8023 -7.8983 25 1 4.3788 -9.7590 -8.4130 26 1 3.9251 -9.1738 -6.1038 27 6 4.2310 -2.2246 -0.7053 28 6 3.4401 -3.3713 -1.2803 29 1 -0.3634 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8899 -0.5138 32 1 1.6978 -2.0061 0.0631 33 1 3.7981 0.7092 0.9196 34 1 6.2519 0.7144 0.7669 35 1 7.4270 -1.1507 -0.3214 36 1 8.5161 -1.4401 -1.9778 37 1 8.0224 -1.6525 -3.6748 38 1 6.8499 -1.0587 -2.4745 39 1 8.9678 -3.9433 -3.2940 40 1 7.9492 -5.0963 -2.3989 41 1 6.1479 -4.8089 -4.0786 42 1 7.1666 -3.6559 -4.9737 43 1 8.8745 -5.4231 -5.3051 44 1 7.8555 -6.5757 -4.4099 45 1 8.1720 -5.9508 -8.0944 46 1 6.5725 -5.1709 -8.1344 47 1 7.9337 -4.3681 -7.3154 48 1 6.2525 -7.9685 -9.3045 49 1 3.2457 -4.1064 -0.4993 50 1 2.4936 -2.9993 -1.6727 51 1 4.0087 -3.8376 -2.0848 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733777749.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:18 Heat of formation + Delta-G solvation = -38.675357 kcal Electronic energy + Delta-G solvation = -30634.814727 eV Core-core repulsion = 26534.290857 eV Total energy + Delta-G solvation = -4100.523869 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.98906 -41.01449 -39.20183 -37.92035 -36.80674 -35.98331 -34.15007 -33.60894 -32.44857 -31.57606 -29.84236 -28.15926 -28.04680 -27.81546 -26.86672 -24.88249 -23.74246 -22.54429 -22.03104 -21.76174 -20.33126 -19.03213 -18.70948 -18.19810 -17.56697 -17.12820 -17.01141 -16.83148 -16.51772 -16.24494 -15.85760 -15.57456 -15.43257 -15.00926 -14.88850 -14.59706 -14.55926 -14.44110 -14.23298 -14.07681 -13.56159 -13.39399 -13.36855 -13.30921 -13.15850 -13.01963 -12.89734 -12.78170 -12.70629 -12.55046 -12.52226 -12.38200 -12.25460 -12.11874 -11.89266 -11.49511 -11.42286 -11.09470 -10.80135 -10.66767 -9.86807 -9.68035 -9.16296 -8.73980 -7.84752 -5.36208 -0.07045 0.17941 1.42663 1.43439 1.44490 1.53342 1.66556 1.93043 2.14401 2.48649 2.70418 3.27995 3.41218 3.69787 3.69890 3.76875 3.91022 4.05146 4.07361 4.24709 4.31388 4.36382 4.43042 4.49922 4.52746 4.56735 4.59215 4.60912 4.63911 4.68343 4.73400 4.75377 4.85745 4.90855 4.93370 5.06666 5.09842 5.16310 5.25068 5.25748 5.28391 5.35177 5.41349 5.48466 5.56720 5.61157 5.70282 5.89888 6.32419 6.33450 6.35591 7.03010 7.07835 7.14918 7.86972 8.29837 9.17847 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011355 B = 0.002523 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.299187 B =11095.537458 C =12716.375344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.506 3.494 3 O -0.570 6.570 4 N -0.663 5.663 5 C 0.130 3.870 6 C -0.115 4.115 7 C -0.106 4.106 8 C -0.095 4.095 9 C -0.126 4.126 10 C 0.553 3.447 11 O -0.572 6.572 12 N -0.606 5.606 13 C 0.067 3.933 14 C 0.124 3.876 15 C -0.129 4.129 16 C 0.153 3.847 17 N -0.623 5.623 18 C 0.178 3.822 19 C -0.262 4.262 20 H 0.059 0.941 21 C -0.052 4.052 22 N -0.938 5.938 23 Si 0.967 3.033 24 H -0.284 1.284 25 H -0.289 1.289 26 H -0.272 1.272 27 C -0.075 4.075 28 C -0.112 4.112 29 H 0.118 0.882 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.425 0.575 33 H 0.143 0.857 34 H 0.161 0.839 35 H 0.154 0.846 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.110 0.890 40 H 0.067 0.933 41 H 0.023 0.977 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.036 0.964 45 H 0.005 0.995 46 H 0.013 0.987 47 H 0.032 0.968 48 H 0.249 0.751 49 H 0.081 0.919 50 H 0.083 0.917 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.341 19.486 20.818 29.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.298 3.702 3 O -0.449 6.449 4 N -0.309 5.309 5 C 0.035 3.965 6 C -0.135 4.135 7 C -0.124 4.124 8 C -0.114 4.114 9 C -0.130 4.130 10 C 0.342 3.658 11 O -0.452 6.452 12 N -0.337 5.337 13 C -0.074 4.074 14 C 0.002 3.998 15 C -0.170 4.170 16 C 0.027 3.973 17 N -0.347 5.347 18 C 0.034 3.966 19 C -0.393 4.393 20 H 0.076 0.924 21 C -0.247 4.247 22 N -0.585 5.585 23 Si 0.795 3.205 24 H -0.211 1.211 25 H -0.215 1.215 26 H -0.197 1.197 27 C -0.079 4.079 28 C -0.168 4.168 29 H 0.136 0.864 30 H 0.117 0.883 31 H 0.125 0.875 32 H 0.264 0.736 33 H 0.161 0.839 34 H 0.179 0.821 35 H 0.171 0.829 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.128 0.872 40 H 0.085 0.915 41 H 0.042 0.958 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.055 0.945 45 H 0.024 0.976 46 H 0.032 0.968 47 H 0.051 0.949 48 H 0.058 0.942 49 H 0.100 0.900 50 H 0.102 0.898 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.143 19.565 20.770 28.994 hybrid contribution -1.016 -1.357 -0.579 1.791 sum -6.159 18.208 20.191 27.878 Atomic orbital electron populations 1.21950 0.86899 1.06669 1.06824 1.21866 0.92613 0.82195 0.73574 1.90674 1.71442 1.32766 1.49974 1.43684 1.04256 1.11003 1.71972 1.17533 0.83901 0.95924 0.99150 1.21700 0.94781 0.98341 0.98653 1.21308 0.93494 0.98950 0.98684 1.21564 1.01177 0.91679 0.96954 1.19574 0.93264 0.96074 1.04084 1.18708 0.79379 0.88470 0.79196 1.90774 1.65953 1.24080 1.64424 1.47914 1.37312 1.09119 1.39385 1.22266 1.01699 0.80205 1.03254 1.21446 0.96823 0.89418 0.92162 1.22288 0.98984 0.99439 0.96325 1.20796 0.94125 0.95318 0.87098 1.44143 1.38020 1.46985 1.05542 1.20529 0.97161 0.92062 0.86882 1.19412 1.08587 1.15247 0.96032 0.92351 1.25843 1.01924 1.00072 0.96888 1.70206 1.38859 1.46555 1.02870 0.85261 0.79499 0.78196 0.77501 1.21083 1.21545 1.19702 1.19696 0.92830 0.96946 0.98404 1.20726 0.99622 0.95596 1.00899 0.86351 0.88278 0.87488 0.73551 0.83897 0.82110 0.82855 0.89359 0.89946 0.90458 0.87153 0.91481 0.95763 0.92463 0.92065 0.94549 0.97625 0.96844 0.94922 0.94162 0.90021 0.89819 0.93656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 10.31 71.24 0.73 -0.26 16 2 C 0.51 7.98 7.80 87.66 0.68 8.67 16 3 O -0.57 -13.66 14.27 -3.03 -0.04 -13.70 16 4 N -0.66 -10.12 4.86 -303.60 -1.48 -11.59 16 5 C 0.13 2.72 6.35 38.11 0.24 2.96 16 6 C -0.11 -2.32 8.73 22.44 0.20 -2.12 16 7 C -0.11 -1.73 10.02 22.21 0.22 -1.51 16 8 C -0.09 -1.70 7.66 22.54 0.17 -1.53 16 9 C -0.13 -3.12 4.91 -20.11 -0.10 -3.22 16 10 C 0.55 16.69 6.36 86.79 0.55 17.24 16 11 O -0.57 -21.99 15.05 -3.89 -0.06 -22.05 16 12 N -0.61 -15.50 2.87 -850.19 -2.44 -17.94 16 13 C 0.07 1.11 9.05 127.77 1.16 2.27 16 14 C 0.12 3.49 5.44 86.38 0.47 3.96 16 15 C -0.13 -4.67 5.86 30.60 0.18 -4.49 16 16 C 0.15 6.39 5.65 86.38 0.49 6.88 16 17 N -0.62 -32.83 2.92 -726.94 -2.12 -34.95 16 18 C 0.18 9.08 8.96 127.77 1.15 10.23 16 19 C -0.26 -15.28 9.65 84.04 0.81 -14.47 16 20 H 0.06 3.42 7.84 -2.91 -0.02 3.40 16 21 C -0.05 -3.06 5.17 84.86 0.44 -2.62 16 22 N -0.94 -57.16 10.64 21.65 0.23 -56.93 16 23 Si 0.97 46.94 29.56 68.60 2.03 48.97 16 24 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 25 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 26 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 27 C -0.08 -1.82 5.93 -19.48 -0.12 -1.94 16 28 C -0.11 -2.72 8.46 71.24 0.60 -2.12 16 29 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.43 4.08 7.74 -92.71 -0.72 3.37 16 33 H 0.14 3.05 5.88 -2.91 -0.02 3.03 16 34 H 0.16 1.61 8.06 -2.91 -0.02 1.58 16 35 H 0.15 1.97 6.37 -2.91 -0.02 1.95 16 36 H 0.09 0.94 7.36 -2.39 -0.02 0.92 16 37 H 0.08 1.26 8.08 -2.39 -0.02 1.24 16 38 H 0.08 1.28 5.86 -2.39 -0.01 1.27 16 39 H 0.11 2.33 8.07 -2.39 -0.02 2.31 16 40 H 0.07 2.14 7.38 -2.39 -0.02 2.12 16 41 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.06 2.23 8.07 -2.39 -0.02 2.21 16 44 H 0.04 1.58 8.04 -2.39 -0.02 1.56 16 45 H 0.01 0.30 7.38 -2.38 -0.02 0.28 16 46 H 0.01 0.72 7.30 -2.39 -0.02 0.70 16 47 H 0.03 1.38 8.04 -2.39 -0.02 1.36 16 48 H 0.25 14.66 8.31 -92.71 -0.77 13.88 16 49 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 50 H 0.08 1.58 7.31 -2.39 -0.02 1.56 16 51 H 0.04 1.43 6.46 -2.39 -0.02 1.41 16 Total: -1.00 -82.39 410.22 4.22 -78.17 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 0.22 Total: 12.10 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: 7.88 Total: 17.93 kcal Atomic # 7 Polarization: -115.60 SS G_CDS: -5.81 Total: -121.41 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -0.10 Total: -35.75 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -82.39 4.22 -78.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733777749.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.495 kcal (2) G-P(sol) polarization free energy of solvation -82.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds