Wall clock time and date at job start Wed Apr 1 2020 05:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35711 * 116.99726 * 2 1 4 4 C 1.39011 * 119.91278 * 0.02562 * 3 2 1 5 5 C 1.37683 * 120.09030 * 179.74488 * 4 3 2 6 6 C 1.39757 * 119.90933 * 0.52743 * 5 4 3 7 7 C 1.47602 * 120.09054 * 179.71909 * 6 5 4 8 8 O 1.21579 * 119.99838 * 173.47825 * 7 6 5 9 9 N 1.34778 * 119.99920 * 353.48222 * 7 6 5 10 10 C 1.46498 * 119.99854 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46734 * 180.02562 * 10 9 7 12 12 N 1.46906 * 109.46916 * 179.97438 * 11 10 9 13 13 C 1.46901 * 110.99675 * 169.99585 * 12 11 10 14 14 C 1.53245 * 109.33698 * 172.74413 * 13 12 11 15 15 N 1.47079 * 108.51880 * 53.82622 * 14 13 12 16 16 C 1.36942 * 120.87794 * 128.80022 * 15 14 13 17 17 H 1.07996 * 119.99710 * 210.61882 * 16 15 14 18 18 C 1.38810 * 120.00160 * 30.60957 * 16 15 14 19 19 N 1.31617 * 120.00132 * 9.80208 * 18 16 15 20 20 Si 1.86802 * 119.99947 * 189.80366 * 18 16 15 21 21 H 1.48502 * 109.47117 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47193 * 120.00092 * 20 18 16 23 23 H 1.48502 * 109.47150 * 240.00053 * 20 18 16 24 24 C 1.47077 * 118.24208 * 308.81614 * 15 14 13 25 25 C 1.46892 * 111.00203 * 45.69346 * 12 11 10 26 26 C 1.39719 * 119.82313 * 359.45229 * 6 5 4 27 27 C 1.50693 * 120.04529 * 180.29643 * 26 6 5 28 28 C 1.37726 * 119.91003 * 0.26924 * 26 6 5 29 29 H 1.09004 * 109.47393 * 299.99653 * 1 2 3 30 30 H 1.08997 * 109.47319 * 60.00146 * 1 2 3 31 31 H 1.09001 * 109.46702 * 180.02562 * 1 2 3 32 32 H 1.07995 * 119.95700 * 0.02562 * 4 3 2 33 33 H 1.07998 * 120.04805 * 180.27506 * 5 4 3 34 34 H 0.97003 * 119.99613 * 359.97438 * 9 7 6 35 35 H 1.08997 * 109.47425 * 59.99715 * 10 9 7 36 36 H 1.08999 * 109.46818 * 299.99256 * 10 9 7 37 37 H 1.08994 * 109.48114 * 59.99183 * 11 10 9 38 38 H 1.09003 * 109.47234 * 299.99221 * 11 10 9 39 39 H 1.09003 * 109.49702 * 52.78593 * 13 12 11 40 40 H 1.08992 * 109.49466 * 292.70184 * 13 12 11 41 41 H 1.08994 * 109.62892 * 173.54111 * 14 13 12 42 42 H 1.09001 * 109.62614 * 293.92435 * 14 13 12 43 43 H 0.96997 * 120.00600 * 179.97438 * 19 18 16 44 44 H 1.08993 * 109.62981 * 170.89667 * 24 15 14 45 45 H 1.09009 * 109.62769 * 291.47451 * 24 15 14 46 46 H 1.08999 * 109.49619 * 67.29356 * 25 12 11 47 47 H 1.09003 * 109.48990 * 307.21439 * 25 12 11 48 48 H 1.08994 * 109.47564 * 81.48972 * 27 26 6 49 49 H 1.09001 * 109.47171 * 201.49016 * 27 26 6 50 50 H 1.09007 * 109.47102 * 321.48649 * 27 26 6 51 51 H 1.07996 * 119.95683 * 179.97438 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2861 2.3739 0.0005 5 6 1.9073 3.6026 0.0058 6 6 3.3029 3.6780 -0.0005 7 6 3.9729 4.9931 -0.0011 8 8 5.1815 5.0596 0.1131 9 7 3.2450 6.1203 -0.1281 10 6 3.9101 7.4255 -0.1292 11 6 2.8638 8.5309 -0.2853 12 7 3.5307 9.8398 -0.2858 13 6 2.5961 10.9066 -0.6688 14 6 3.2756 12.2675 -0.4828 15 7 4.5473 12.2596 -1.2218 16 6 4.8556 13.2635 -2.1007 17 1 5.4733 13.0563 -2.9620 18 6 4.3741 14.5473 -1.8846 19 7 3.7874 14.8471 -0.7452 20 14 4.5587 15.8497 -3.2110 21 1 5.2489 15.2632 -4.3879 22 1 3.2160 16.3373 -3.6163 23 1 5.3588 16.9839 -2.6831 24 6 5.4788 11.1448 -0.9922 25 6 4.7125 9.8282 -1.1581 26 6 4.0621 2.5051 -0.0005 27 6 5.5671 2.5805 -0.0006 28 6 3.4331 1.2798 0.0000 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2078 2.3149 0.0014 33 1 1.3170 4.5070 0.0107 34 1 2.2807 6.0671 -0.2194 35 1 4.6159 7.4730 -0.9585 36 1 4.4445 7.5618 0.8110 37 1 2.1583 8.4833 0.5442 38 1 2.3290 8.3949 -1.2253 39 1 1.7074 10.8548 -0.0398 40 1 2.3107 10.7824 -1.7133 41 1 2.6306 13.0551 -0.8722 42 1 3.4655 12.4401 0.5766 43 1 3.4513 15.7443 -0.5940 44 1 6.2903 11.1903 -1.7184 45 1 5.8836 11.2081 0.0180 46 1 4.3976 9.7190 -2.1959 47 1 5.3587 8.9943 -0.8840 48 1 5.9225 2.7505 1.0157 49 1 5.9779 1.6437 -0.3771 50 1 5.8897 3.4019 -0.6405 51 1 4.0192 0.3727 -0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752373696.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:26 Heat of formation + Delta-G solvation = -7.501745 kcal Electronic energy + Delta-G solvation = -29844.560124 eV Core-core repulsion = 25745.388044 eV Total energy + Delta-G solvation = -4099.172080 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.93774 -39.77213 -38.36001 -37.49741 -35.53702 -34.11936 -32.74263 -31.55241 -31.08700 -30.12532 -28.90633 -27.89940 -26.95734 -25.87845 -23.90078 -23.49641 -22.50344 -21.90182 -21.06102 -20.67769 -19.10259 -18.29621 -17.78595 -17.02448 -16.75896 -16.29365 -15.91786 -15.65164 -15.29388 -14.99221 -14.62023 -14.45182 -14.36024 -14.13332 -13.80919 -13.66455 -13.56732 -13.33328 -13.31355 -13.07317 -12.93365 -12.59206 -12.45320 -12.35241 -12.19716 -11.67403 -11.44501 -11.38521 -11.30354 -11.28671 -10.97613 -10.75709 -10.45018 -10.27748 -10.04828 -9.82961 -9.77022 -9.59474 -9.28045 -9.15081 -8.63974 -8.51294 -7.86691 -6.59359 -5.77046 -3.23983 0.55810 0.88814 2.63114 2.71472 2.96925 3.36790 3.44347 3.46469 3.48389 4.20834 4.35960 4.37904 4.49857 4.54163 4.55530 4.62999 4.71637 4.90248 4.91351 4.97710 5.06547 5.13337 5.36851 5.41538 5.44615 5.50523 5.52807 5.61536 5.66147 5.80208 5.82949 5.89244 5.92028 5.92635 6.02276 6.15081 6.20870 6.23555 6.25729 6.32325 6.39233 6.54778 6.71057 6.84642 6.96067 7.25183 7.33366 7.55156 7.64812 7.72433 7.81825 8.08376 8.47562 9.23611 9.84831 10.45191 11.31507 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026195 B = 0.001677 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.633359 B =16690.465381 C =17310.352431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.314 6.314 3 C 0.156 3.844 4 C -0.225 4.225 5 C -0.039 4.039 6 C -0.178 4.178 7 C 0.560 3.440 8 O -0.531 6.531 9 N -0.726 5.726 10 C 0.116 3.884 11 C 0.044 3.956 12 N -0.527 5.527 13 C 0.036 3.964 14 C 0.179 3.821 15 N -0.596 5.596 16 C -0.251 4.251 17 H 0.065 0.935 18 C 0.003 3.997 19 N -0.906 5.906 20 Si 0.904 3.096 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.289 1.289 24 C 0.148 3.852 25 C 0.034 3.966 26 C 0.019 3.981 27 C -0.121 4.121 28 C -0.166 4.166 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.102 0.898 32 H 0.134 0.866 33 H 0.130 0.870 34 H 0.396 0.604 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.032 0.968 39 H 0.060 0.940 40 H 0.025 0.975 41 H 0.090 0.910 42 H 0.027 0.973 43 H 0.253 0.747 44 H 0.056 0.944 45 H 0.027 0.973 46 H 0.028 0.972 47 H 0.069 0.931 48 H 0.080 0.920 49 H 0.059 0.941 50 H 0.098 0.902 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.405 -29.468 2.302 30.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.227 6.227 3 C 0.110 3.890 4 C -0.243 4.243 5 C -0.058 4.058 6 C -0.181 4.181 7 C 0.348 3.652 8 O -0.410 6.410 9 N -0.378 5.378 10 C -0.007 4.007 11 C -0.085 4.085 12 N -0.253 5.253 13 C -0.093 4.093 14 C 0.053 3.947 15 N -0.319 5.319 16 C -0.381 4.381 17 H 0.082 0.918 18 C -0.196 4.196 19 N -0.551 5.551 20 Si 0.734 3.266 21 H -0.203 1.203 22 H -0.216 1.216 23 H -0.216 1.216 24 C 0.021 3.979 25 C -0.095 4.095 26 C 0.018 3.982 27 C -0.177 4.177 28 C -0.184 4.184 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.120 0.880 32 H 0.152 0.848 33 H 0.147 0.853 34 H 0.231 0.769 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.050 0.950 39 H 0.079 0.921 40 H 0.044 0.956 41 H 0.108 0.892 42 H 0.045 0.955 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.045 0.955 46 H 0.046 0.954 47 H 0.088 0.912 48 H 0.099 0.901 49 H 0.078 0.922 50 H 0.116 0.884 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.346 -29.299 2.891 30.344 hybrid contribution -1.268 0.663 -1.450 2.037 sum -8.615 -28.636 1.441 29.938 Atomic orbital electron populations 1.23134 0.77905 1.04283 1.01695 1.86050 1.21818 1.26911 1.87913 1.19265 0.92325 0.84204 0.93212 1.21135 1.00321 0.92001 1.10881 1.21070 0.93216 0.97518 0.94022 1.19709 0.93420 0.93331 1.11642 1.18078 0.86814 0.83716 0.76550 1.90755 1.13664 1.87056 1.49497 1.45901 1.10790 1.06224 1.74896 1.21585 0.95495 0.80210 1.03407 1.22259 0.96017 0.89820 1.00403 1.62033 1.08082 1.01832 1.53330 1.22944 0.94572 0.94438 0.97358 1.20866 0.87493 0.90979 0.95383 1.44079 1.15092 1.23628 1.49116 1.19235 1.30271 0.87240 1.01330 0.91755 1.25164 1.01057 0.96957 0.96392 1.69970 1.43102 1.19552 1.22431 0.86186 0.77379 0.81783 0.81213 1.20296 1.21638 1.21607 1.20999 0.92004 0.86402 0.98449 1.22801 0.92542 1.00284 0.93862 1.19837 0.96930 0.90486 0.90979 1.21098 0.89226 1.03135 1.04197 1.20296 0.91176 0.98239 1.08735 0.92316 0.92309 0.87984 0.84842 0.85253 0.76889 0.90749 0.90276 0.90691 0.95004 0.92115 0.95640 0.89222 0.95488 0.93641 0.92578 0.95535 0.95397 0.91234 0.90142 0.92222 0.88402 0.84490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.31 -2.43 10.48 -18.84 -0.20 -2.62 16 3 C 0.16 1.32 6.70 -39.02 -0.26 1.06 16 4 C -0.22 -1.64 9.01 -39.50 -0.36 -2.00 16 5 C -0.04 -0.31 9.51 -39.22 -0.37 -0.68 16 6 C -0.18 -1.83 5.88 -104.96 -0.62 -2.45 16 7 C 0.56 6.87 7.69 -12.44 -0.10 6.78 16 8 O -0.53 -8.09 13.37 5.30 0.07 -8.02 16 9 N -0.73 -7.72 5.50 -61.33 -0.34 -8.05 16 10 C 0.12 1.48 4.92 -4.04 -0.02 1.46 16 11 C 0.04 0.58 5.38 -3.82 -0.02 0.56 16 12 N -0.53 -9.20 4.78 -234.32 -1.12 -10.32 16 13 C 0.04 0.69 5.58 -3.70 -0.02 0.67 16 14 C 0.18 4.32 5.36 -3.60 -0.02 4.30 16 15 N -0.60 -15.22 3.03 -172.02 -0.52 -15.74 16 16 C -0.25 -6.95 9.62 -15.06 -0.14 -7.10 16 17 H 0.06 1.76 7.85 -52.49 -0.41 1.34 16 18 C 0.00 0.07 5.08 -17.43 -0.09 -0.01 16 19 N -0.91 -26.32 11.01 55.49 0.61 -25.71 16 20 Si 0.90 21.74 29.56 -169.99 -5.03 16.72 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 24 C 0.15 3.21 6.69 -3.60 -0.02 3.19 16 25 C 0.03 0.62 5.04 -3.71 -0.02 0.60 16 26 C 0.02 0.19 5.91 -104.26 -0.62 -0.43 16 27 C -0.12 -1.18 8.64 36.00 0.31 -0.87 16 28 C -0.17 -1.49 9.59 -39.49 -0.38 -1.87 16 29 H 0.06 0.18 7.65 -51.93 -0.40 -0.22 16 30 H 0.06 0.18 7.65 -51.93 -0.40 -0.22 16 31 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.13 0.64 6.28 -52.49 -0.33 0.31 16 33 H 0.13 0.70 6.45 -52.49 -0.34 0.36 16 34 H 0.40 3.09 6.54 -40.82 -0.27 2.83 16 35 H 0.07 1.04 6.18 -51.93 -0.32 0.72 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.03 0.41 8.08 -51.93 -0.42 -0.01 16 39 H 0.06 1.04 8.11 -51.93 -0.42 0.62 16 40 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.09 2.39 6.19 -51.93 -0.32 2.07 16 42 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.06 1.17 7.95 -51.93 -0.41 0.76 16 45 H 0.03 0.60 8.14 -51.92 -0.42 0.17 16 46 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.07 1.11 5.73 -51.93 -0.30 0.82 16 48 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.06 0.46 8.02 -51.93 -0.42 0.04 16 50 H 0.10 1.15 6.00 -51.93 -0.31 0.84 16 51 H 0.14 1.03 8.04 -52.49 -0.42 0.61 16 LS Contribution 399.65 15.07 6.02 6.02 Total: -1.00 -32.89 399.65 -10.25 -43.14 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -8.00 Total: 0.30 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -1.75 Total: 4.29 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: -1.37 Total: -59.82 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: -0.13 Total: -10.65 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.89 -10.25 -43.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752373696.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.643 kcal (2) G-P(sol) polarization free energy of solvation -32.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds