Wall clock time and date at job start Wed Apr 1 2020 05:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35711 * 116.99726 * 2 1 4 4 C 1.39011 * 119.91278 * 0.02562 * 3 2 1 5 5 C 1.37683 * 120.09030 * 179.74488 * 4 3 2 6 6 C 1.39757 * 119.90933 * 0.52743 * 5 4 3 7 7 C 1.47602 * 120.09054 * 179.71909 * 6 5 4 8 8 O 1.21579 * 119.99838 * 173.47825 * 7 6 5 9 9 N 1.34778 * 119.99920 * 353.48222 * 7 6 5 10 10 C 1.46498 * 119.99854 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46734 * 180.02562 * 10 9 7 12 12 N 1.46906 * 109.46916 * 179.97438 * 11 10 9 13 13 C 1.46901 * 110.99675 * 169.99585 * 12 11 10 14 14 C 1.53245 * 109.33698 * 172.74413 * 13 12 11 15 15 N 1.47079 * 108.51880 * 53.82622 * 14 13 12 16 16 C 1.36942 * 120.87794 * 128.80022 * 15 14 13 17 17 H 1.07996 * 119.99710 * 210.61882 * 16 15 14 18 18 C 1.38810 * 120.00160 * 30.60957 * 16 15 14 19 19 N 1.31617 * 120.00132 * 9.80208 * 18 16 15 20 20 Si 1.86802 * 119.99947 * 189.80366 * 18 16 15 21 21 H 1.48502 * 109.47117 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47193 * 120.00092 * 20 18 16 23 23 H 1.48502 * 109.47150 * 240.00053 * 20 18 16 24 24 C 1.47077 * 118.24208 * 308.81614 * 15 14 13 25 25 C 1.46892 * 111.00203 * 45.69346 * 12 11 10 26 26 C 1.39719 * 119.82313 * 359.45229 * 6 5 4 27 27 C 1.50693 * 120.04529 * 180.29643 * 26 6 5 28 28 C 1.37726 * 119.91003 * 0.26924 * 26 6 5 29 29 H 1.09004 * 109.47393 * 299.99653 * 1 2 3 30 30 H 1.08997 * 109.47319 * 60.00146 * 1 2 3 31 31 H 1.09001 * 109.46702 * 180.02562 * 1 2 3 32 32 H 1.07995 * 119.95700 * 0.02562 * 4 3 2 33 33 H 1.07998 * 120.04805 * 180.27506 * 5 4 3 34 34 H 0.97003 * 119.99613 * 359.97438 * 9 7 6 35 35 H 1.08997 * 109.47425 * 59.99715 * 10 9 7 36 36 H 1.08999 * 109.46818 * 299.99256 * 10 9 7 37 37 H 1.08994 * 109.48114 * 59.99183 * 11 10 9 38 38 H 1.09003 * 109.47234 * 299.99221 * 11 10 9 39 39 H 1.09003 * 109.49702 * 52.78593 * 13 12 11 40 40 H 1.08992 * 109.49466 * 292.70184 * 13 12 11 41 41 H 1.08994 * 109.62892 * 173.54111 * 14 13 12 42 42 H 1.09001 * 109.62614 * 293.92435 * 14 13 12 43 43 H 0.96997 * 120.00600 * 179.97438 * 19 18 16 44 44 H 1.08993 * 109.62981 * 170.89667 * 24 15 14 45 45 H 1.09009 * 109.62769 * 291.47451 * 24 15 14 46 46 H 1.08999 * 109.49619 * 67.29356 * 25 12 11 47 47 H 1.09003 * 109.48990 * 307.21439 * 25 12 11 48 48 H 1.08994 * 109.47564 * 81.48972 * 27 26 6 49 49 H 1.09001 * 109.47171 * 201.49016 * 27 26 6 50 50 H 1.09007 * 109.47102 * 321.48649 * 27 26 6 51 51 H 1.07996 * 119.95683 * 179.97438 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2861 2.3739 0.0005 5 6 1.9073 3.6026 0.0058 6 6 3.3029 3.6780 -0.0005 7 6 3.9729 4.9931 -0.0011 8 8 5.1815 5.0596 0.1131 9 7 3.2450 6.1203 -0.1281 10 6 3.9101 7.4255 -0.1292 11 6 2.8638 8.5309 -0.2853 12 7 3.5307 9.8398 -0.2858 13 6 2.5961 10.9066 -0.6688 14 6 3.2756 12.2675 -0.4828 15 7 4.5473 12.2596 -1.2218 16 6 4.8556 13.2635 -2.1007 17 1 5.4733 13.0563 -2.9620 18 6 4.3741 14.5473 -1.8846 19 7 3.7874 14.8471 -0.7452 20 14 4.5587 15.8497 -3.2110 21 1 5.2489 15.2632 -4.3879 22 1 3.2160 16.3373 -3.6163 23 1 5.3588 16.9839 -2.6831 24 6 5.4788 11.1448 -0.9922 25 6 4.7125 9.8282 -1.1581 26 6 4.0621 2.5051 -0.0005 27 6 5.5671 2.5805 -0.0006 28 6 3.4331 1.2798 0.0000 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2078 2.3149 0.0014 33 1 1.3170 4.5070 0.0107 34 1 2.2807 6.0671 -0.2194 35 1 4.6159 7.4730 -0.9585 36 1 4.4445 7.5618 0.8110 37 1 2.1583 8.4833 0.5442 38 1 2.3290 8.3949 -1.2253 39 1 1.7074 10.8548 -0.0398 40 1 2.3107 10.7824 -1.7133 41 1 2.6306 13.0551 -0.8722 42 1 3.4655 12.4401 0.5766 43 1 3.4513 15.7443 -0.5940 44 1 6.2903 11.1903 -1.7184 45 1 5.8836 11.2081 0.0180 46 1 4.3976 9.7190 -2.1959 47 1 5.3587 8.9943 -0.8840 48 1 5.9225 2.7505 1.0157 49 1 5.9779 1.6437 -0.3771 50 1 5.8897 3.4019 -0.6405 51 1 4.0192 0.3727 -0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752373696.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:24 Heat of formation + Delta-G solvation = -30.032452 kcal Electronic energy + Delta-G solvation = -29845.537129 eV Core-core repulsion = 25745.388044 eV Total energy + Delta-G solvation = -4100.149085 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.63586 -40.55432 -39.77404 -38.23085 -36.89579 -35.54020 -33.57597 -33.16683 -32.09120 -31.59819 -30.09894 -28.72382 -27.56231 -27.38820 -25.29525 -24.51950 -24.10429 -22.90127 -22.12853 -21.51940 -20.79728 -18.92451 -18.74622 -18.50026 -17.67612 -17.06642 -16.83902 -16.71722 -16.59426 -16.12275 -15.90609 -15.70414 -15.40829 -15.22579 -15.18012 -14.95351 -14.82711 -14.45732 -14.30245 -14.20970 -13.89421 -13.74456 -13.15650 -13.13754 -13.03993 -12.96063 -12.92905 -12.76160 -12.63899 -12.41314 -12.26397 -12.01410 -11.93897 -11.91295 -11.83164 -11.51688 -11.42519 -10.75312 -10.60623 -10.15372 -9.88539 -9.28233 -9.27939 -8.62376 -7.87261 -5.38173 -0.13627 0.27614 1.45910 1.47126 1.57926 1.82599 2.03410 2.27053 2.49814 2.76815 3.08254 3.29621 3.65968 3.68529 3.74038 3.79027 3.85381 4.06740 4.08156 4.26762 4.29860 4.34466 4.38531 4.41869 4.44094 4.44900 4.57126 4.63102 4.70887 4.72117 4.76198 4.81867 4.86095 4.89355 4.93864 4.95490 5.02377 5.05667 5.16782 5.20031 5.23085 5.37473 5.40597 5.54825 5.61114 5.61926 5.72136 6.13607 6.21858 6.33428 6.40062 6.52586 7.14792 7.21283 7.83072 8.38821 9.19129 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026195 B = 0.001677 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.633359 B =16690.465381 C =17310.352431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.329 6.329 3 C 0.154 3.846 4 C -0.221 4.221 5 C -0.033 4.033 6 C -0.198 4.198 7 C 0.557 3.443 8 O -0.570 6.570 9 N -0.713 5.713 10 C 0.127 3.873 11 C 0.052 3.948 12 N -0.540 5.540 13 C 0.053 3.947 14 C 0.185 3.815 15 N -0.615 5.615 16 C -0.265 4.265 17 H 0.065 0.935 18 C -0.049 4.049 19 N -0.936 5.936 20 Si 0.971 3.029 21 H -0.268 1.268 22 H -0.287 1.287 23 H -0.291 1.291 24 C 0.143 3.857 25 C 0.049 3.951 26 C 0.004 3.996 27 C -0.116 4.116 28 C -0.176 4.176 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.119 0.881 32 H 0.163 0.837 33 H 0.157 0.843 34 H 0.413 0.587 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.097 0.903 38 H 0.047 0.953 39 H 0.087 0.913 40 H 0.023 0.977 41 H 0.059 0.941 42 H -0.002 1.002 43 H 0.251 0.749 44 H 0.058 0.942 45 H 0.015 0.985 46 H 0.025 0.975 47 H 0.092 0.908 48 H 0.071 0.929 49 H 0.077 0.923 50 H 0.075 0.925 51 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.616 -31.461 1.661 33.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.242 6.242 3 C 0.107 3.893 4 C -0.239 4.239 5 C -0.052 4.052 6 C -0.201 4.201 7 C 0.347 3.653 8 O -0.451 6.451 9 N -0.366 5.366 10 C 0.003 3.997 11 C -0.076 4.076 12 N -0.265 5.265 13 C -0.076 4.076 14 C 0.059 3.941 15 N -0.339 5.339 16 C -0.395 4.395 17 H 0.082 0.918 18 C -0.245 4.245 19 N -0.582 5.582 20 Si 0.799 3.201 21 H -0.192 1.192 22 H -0.214 1.214 23 H -0.218 1.218 24 C 0.017 3.983 25 C -0.080 4.080 26 C 0.003 3.997 27 C -0.172 4.172 28 C -0.195 4.195 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.137 0.863 32 H 0.180 0.820 33 H 0.175 0.825 34 H 0.251 0.749 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.115 0.885 38 H 0.065 0.935 39 H 0.105 0.895 40 H 0.041 0.959 41 H 0.077 0.923 42 H 0.016 0.984 43 H 0.060 0.940 44 H 0.076 0.924 45 H 0.033 0.967 46 H 0.043 0.957 47 H 0.110 0.890 48 H 0.090 0.910 49 H 0.095 0.905 50 H 0.094 0.906 51 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.592 -31.334 2.246 32.847 hybrid contribution -0.612 1.158 -1.203 1.778 sum -10.204 -30.177 1.043 31.872 Atomic orbital electron populations 1.23449 0.75876 1.05909 1.02770 1.86040 1.23956 1.26640 1.87587 1.19431 0.92327 0.85055 0.92472 1.21455 1.01746 0.91178 1.09571 1.21350 0.92211 0.98981 0.92663 1.19671 0.94613 0.92130 1.13728 1.18447 0.86479 0.84643 0.75764 1.90742 1.15386 1.87629 1.51310 1.45691 1.11546 1.05038 1.74327 1.21307 0.95234 0.81090 1.02112 1.22251 0.96004 0.87247 1.02050 1.61923 1.07968 1.03607 1.53036 1.22605 0.94973 0.92214 0.97840 1.20642 0.87048 0.93284 0.93161 1.44358 1.16369 1.24168 1.48990 1.19550 1.30025 0.88139 1.01797 0.91765 1.25930 1.01153 0.98925 0.98453 1.70139 1.44128 1.19743 1.24226 0.85147 0.77195 0.78855 0.78875 1.19202 1.21407 1.21840 1.21134 0.92208 0.87214 0.97757 1.22579 0.92961 0.98569 0.93927 1.19909 0.96845 0.91128 0.91819 1.20992 0.89837 1.03112 1.03238 1.20400 0.91980 0.98065 1.09039 0.91176 0.91173 0.86310 0.81953 0.82549 0.74946 0.92023 0.91756 0.88518 0.93513 0.89459 0.95881 0.92255 0.98367 0.93987 0.92380 0.96717 0.95683 0.89007 0.91020 0.90454 0.90631 0.83739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.81 113.37 1.11 1.18 16 2 O -0.33 -4.34 10.48 -90.32 -0.95 -5.29 16 3 C 0.15 2.28 6.70 22.63 0.15 2.43 16 4 C -0.22 -2.52 9.01 22.32 0.20 -2.32 16 5 C -0.03 -0.43 9.51 22.51 0.21 -0.22 16 6 C -0.20 -3.85 5.88 -20.08 -0.12 -3.97 16 7 C 0.56 13.25 7.69 86.71 0.67 13.92 16 8 O -0.57 -17.68 13.37 -3.96 -0.05 -17.73 16 9 N -0.71 -13.67 5.50 -466.22 -2.57 -16.23 16 10 C 0.13 2.99 4.92 86.38 0.43 3.42 16 11 C 0.05 1.23 5.38 86.30 0.46 1.69 16 12 N -0.54 -17.94 4.78 -895.25 -4.28 -22.22 16 13 C 0.05 1.97 5.58 86.38 0.48 2.45 16 14 C 0.18 9.09 5.36 86.35 0.46 9.56 16 15 N -0.61 -31.96 3.03 -698.14 -2.11 -34.07 16 16 C -0.26 -14.89 9.62 84.03 0.81 -14.09 16 17 H 0.06 3.53 7.85 -2.91 -0.02 3.51 16 18 C -0.05 -2.79 5.08 84.86 0.43 -2.35 16 19 N -0.94 -55.83 11.01 21.65 0.24 -55.59 16 20 Si 0.97 45.20 29.56 68.60 2.03 47.23 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 22 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 23 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 24 C 0.14 6.24 6.69 86.35 0.58 6.82 16 25 C 0.05 1.71 5.04 86.38 0.44 2.15 16 26 C 0.00 0.08 5.91 -19.63 -0.12 -0.03 16 27 C -0.12 -2.35 8.64 71.23 0.62 -1.73 16 28 C -0.18 -2.99 9.59 22.33 0.21 -2.77 16 29 H 0.07 0.18 7.65 -2.39 -0.02 0.17 16 30 H 0.07 0.18 7.65 -2.39 -0.02 0.17 16 31 H 0.12 0.15 8.14 -2.39 -0.02 0.13 16 32 H 0.16 0.85 6.28 -2.91 -0.02 0.83 16 33 H 0.16 1.05 6.45 -2.91 -0.02 1.03 16 34 H 0.41 5.05 6.54 -92.71 -0.61 4.44 16 35 H 0.06 1.64 6.18 -2.39 -0.01 1.62 16 36 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.05 1.01 8.08 -2.39 -0.02 0.99 16 39 H 0.09 2.78 8.11 -2.39 -0.02 2.76 16 40 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.06 3.26 6.19 -2.39 -0.01 3.24 16 42 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 43 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 44 H 0.06 2.45 7.95 -2.39 -0.02 2.44 16 45 H 0.01 0.68 8.14 -2.38 -0.02 0.66 16 46 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.09 2.83 5.73 -2.39 -0.01 2.82 16 48 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 49 H 0.08 1.20 8.02 -2.39 -0.02 1.18 16 50 H 0.08 1.88 6.00 -2.38 -0.01 1.87 16 51 H 0.14 2.08 8.04 -2.91 -0.02 2.05 16 Total: -1.00 -73.70 399.65 -0.33 -74.03 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 0.33 Total: 13.75 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: 7.03 Total: 16.12 kcal Atomic # 7 Polarization: -119.39 SS G_CDS: -8.72 Total: -128.11 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -1.00 Total: -23.02 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -73.70 -0.33 -74.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752373696.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.995 kcal (2) G-P(sol) polarization free energy of solvation -73.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds