Wall clock time and date at job start Wed Apr 1 2020 04:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38355 * 119.85878 * 2 1 4 4 C 1.37951 * 120.15117 * 179.97438 * 3 2 1 5 5 C 1.50698 * 120.07735 * 180.02562 * 4 3 2 6 6 C 1.39582 * 119.84949 * 0.02562 * 4 3 2 7 7 C 1.47850 * 120.14154 * 179.97438 * 6 4 3 8 8 O 1.21553 * 120.00185 * 90.00011 * 7 6 4 9 9 N 1.34777 * 119.99831 * 269.71966 * 7 6 4 10 10 C 1.46499 * 120.00199 * 180.27510 * 9 7 6 11 11 C 1.52997 * 109.47551 * 180.02562 * 10 9 7 12 12 N 1.46893 * 109.47217 * 180.02562 * 11 10 9 13 13 C 1.46908 * 111.00230 * 66.04709 * 12 11 10 14 14 C 1.46908 * 110.99875 * 189.99741 * 12 11 10 15 15 C 1.50696 * 109.47148 * 170.00121 * 14 12 11 16 16 O 1.21294 * 120.00143 * 359.97438 * 15 14 12 17 17 N 1.34773 * 119.99968 * 180.02562 * 15 14 12 18 18 C 1.37107 * 119.99826 * 179.97438 * 17 15 14 19 19 H 1.07995 * 119.99789 * 0.02562 * 18 17 15 20 20 C 1.38953 * 119.99829 * 179.97438 * 18 17 15 21 21 N 1.31401 * 119.99869 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99777 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46892 * 90.00023 * 22 20 18 24 24 H 1.48499 * 109.46937 * 209.99519 * 22 20 18 25 25 H 1.48498 * 109.47668 * 329.99837 * 22 20 18 26 26 C 1.39569 * 119.71017 * 0.24996 * 6 4 3 27 27 C 1.50705 * 120.07038 * 179.72433 * 26 6 4 28 28 C 1.37957 * 119.85643 * 359.47467 * 26 6 4 29 29 H 1.09001 * 109.46832 * 89.99927 * 1 2 3 30 30 H 1.09004 * 109.47439 * 209.99755 * 1 2 3 31 31 H 1.09000 * 109.47092 * 330.00489 * 1 2 3 32 32 H 1.08002 * 119.92144 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.47235 * 269.97921 * 5 4 3 34 34 H 1.09001 * 109.47202 * 29.97824 * 5 4 3 35 35 H 1.09003 * 109.47390 * 149.97905 * 5 4 3 36 36 H 0.97001 * 119.99727 * 0.28406 * 9 7 6 37 37 H 1.08998 * 109.47134 * 300.00670 * 10 9 7 38 38 H 1.09002 * 109.46857 * 59.99862 * 10 9 7 39 39 H 1.09007 * 109.46479 * 300.00271 * 11 10 9 40 40 H 1.09003 * 109.47114 * 59.99483 * 11 10 9 41 41 H 1.08999 * 109.47255 * 59.99633 * 13 12 11 42 42 H 1.08997 * 109.46898 * 179.97438 * 13 12 11 43 43 H 1.08998 * 109.46687 * 299.99809 * 13 12 11 44 44 H 1.08997 * 109.46835 * 290.00095 * 14 12 11 45 45 H 1.08997 * 109.46909 * 49.99542 * 14 12 11 46 46 H 0.96997 * 120.00260 * 359.97438 * 17 15 14 47 47 H 0.96999 * 120.00337 * 180.02562 * 21 20 18 48 48 H 1.09001 * 109.46898 * 90.00261 * 27 26 6 49 49 H 1.08999 * 109.46910 * 209.99947 * 27 26 6 50 50 H 1.09001 * 109.47632 * 330.00134 * 27 26 6 51 51 H 1.07997 * 119.92986 * 180.27570 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1999 0.0000 4 6 3.5753 1.2069 0.0005 5 6 4.3238 2.5148 0.0011 6 6 4.2762 -0.0002 0.0005 7 6 5.7547 -0.0001 0.0005 8 8 6.3625 -0.0001 1.0532 9 7 6.4285 -0.0059 -1.1667 10 6 7.8935 -0.0119 -1.1667 11 6 8.4035 -0.0170 -2.6092 12 7 9.8724 -0.0237 -2.6092 13 6 10.3932 -1.2784 -2.0500 14 6 10.3999 0.2094 -3.9603 15 6 11.8873 0.4401 -3.8860 16 8 12.4523 0.4134 -2.8130 17 7 12.5895 0.6770 -5.0116 18 6 13.9427 0.8874 -4.9439 19 1 14.4458 0.8628 -3.9886 20 6 14.6668 1.1311 -6.1045 21 7 15.9637 1.3322 -6.0397 22 14 13.7967 1.1715 -7.7570 23 1 13.3445 2.5564 -8.0446 24 1 14.7327 0.7257 -8.8202 25 1 12.6214 0.2646 -7.7201 26 6 3.5752 -1.2070 -0.0053 27 6 4.3238 -2.5150 -0.0116 28 6 2.1957 -1.2001 0.0000 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6522 2.1331 -0.0004 33 1 4.5051 2.8302 -1.0264 34 1 3.7316 3.2723 0.5146 35 1 5.2764 2.3881 0.5156 36 1 5.9435 -0.0058 -2.0067 37 1 8.2605 0.8777 -0.6551 38 1 8.2531 -0.9022 -0.6507 39 1 8.0364 -0.9066 -3.1212 40 1 8.0438 0.8734 -3.1249 41 1 10.0399 -2.1176 -2.6492 42 1 11.4829 -1.2570 -2.0623 43 1 10.0432 -1.3918 -1.0240 44 1 10.1980 -0.6611 -4.5844 45 1 9.9174 1.0860 -4.3925 46 1 12.1377 0.6987 -5.8697 47 1 16.4692 1.5028 -6.8498 48 1 4.5042 -2.8353 1.0145 49 1 3.7318 -3.2699 -0.5291 50 1 5.2767 -2.3859 -0.5248 51 1 1.6521 -2.1333 0.0000 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753072117.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:48 Heat of formation + Delta-G solvation = -46.769376 kcal Electronic energy + Delta-G solvation = -29563.867856 eV Core-core repulsion = 25462.993004 eV Total energy + Delta-G solvation = -4100.874852 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.79926 -39.10815 -38.69661 -36.90389 -34.70463 -34.03537 -33.97633 -33.81338 -31.68952 -29.86307 -28.39730 -28.04129 -27.46147 -27.15438 -25.33840 -23.80619 -22.14146 -21.29048 -21.23121 -20.25792 -19.36831 -18.29093 -17.92807 -16.73087 -16.54265 -16.01803 -15.68094 -15.44050 -14.95387 -14.90819 -14.71610 -14.61940 -14.23690 -13.93331 -13.74806 -13.62630 -13.57970 -13.44743 -13.44260 -13.12008 -13.08164 -13.05818 -12.81590 -12.44891 -12.14703 -12.07693 -11.89788 -11.81630 -11.65258 -11.56268 -11.41552 -11.38324 -11.13550 -11.05489 -10.61138 -10.15995 -9.98329 -9.55028 -9.27763 -9.00884 -8.97450 -8.61451 -8.19257 -8.02762 -6.31642 -3.83112 0.71350 0.93267 2.35792 2.82009 3.00854 3.05567 3.13936 3.20569 3.72199 3.97883 4.09423 4.28928 4.29404 4.33121 4.47461 4.71556 4.79178 4.82629 4.86213 4.97614 4.99528 5.10507 5.12169 5.13125 5.19909 5.22906 5.27259 5.30987 5.36915 5.44933 5.46861 5.50913 5.58129 5.70361 5.74845 5.79385 5.80462 5.83654 5.89458 5.94683 6.01655 6.05894 6.15093 6.16886 6.48801 6.51703 7.06230 7.19854 7.23340 7.57523 7.94784 8.14053 8.59454 8.94757 9.41673 9.82526 10.81483 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021744 B = 0.001681 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.419337 B =16651.694202 C =16947.179350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.064 4.064 3 C -0.130 4.130 4 C -0.041 4.041 5 C -0.125 4.125 6 C -0.134 4.134 7 C 0.568 3.432 8 O -0.528 6.528 9 N -0.723 5.723 10 C 0.120 3.880 11 C 0.045 3.955 12 N -0.515 5.515 13 C 0.017 3.983 14 C 0.044 3.956 15 C 0.452 3.548 16 O -0.557 6.557 17 N -0.591 5.591 18 C -0.305 4.305 19 H 0.120 0.880 20 C 0.042 3.958 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 C -0.042 4.042 27 C -0.122 4.122 28 C -0.130 4.130 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.127 0.873 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.400 0.600 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.037 0.963 40 H 0.079 0.921 41 H 0.016 0.984 42 H 0.099 0.901 43 H 0.065 0.935 44 H 0.050 0.950 45 H 0.090 0.910 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.078 0.922 49 H 0.073 0.927 50 H 0.067 0.933 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.685 -4.219 6.308 34.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.064 4.064 3 C -0.148 4.148 4 C -0.041 4.041 5 C -0.181 4.181 6 C -0.137 4.137 7 C 0.354 3.646 8 O -0.404 6.404 9 N -0.374 5.374 10 C -0.003 4.003 11 C -0.084 4.084 12 N -0.239 5.239 13 C -0.131 4.131 14 C -0.087 4.087 15 C 0.238 3.762 16 O -0.439 6.439 17 N -0.231 5.231 18 C -0.433 4.433 19 H 0.138 0.862 20 C -0.161 4.161 21 N -0.521 5.521 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.196 1.196 26 C -0.043 4.043 27 C -0.179 4.179 28 C -0.148 4.148 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.145 0.855 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.234 0.766 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.055 0.945 40 H 0.098 0.902 41 H 0.035 0.965 42 H 0.117 0.883 43 H 0.083 0.917 44 H 0.068 0.932 45 H 0.108 0.892 46 H 0.202 0.798 47 H 0.084 0.916 48 H 0.096 0.904 49 H 0.091 0.909 50 H 0.086 0.914 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -32.434 -3.809 7.997 33.622 hybrid contribution -1.050 -0.576 -2.431 2.710 sum -33.484 -4.385 5.567 34.226 Atomic orbital electron populations 1.20839 0.90871 1.03053 1.02588 1.20040 0.96235 0.92950 0.97173 1.20833 0.92989 0.97870 1.03088 1.19873 0.93663 0.94061 0.96520 1.20915 1.00560 0.93681 1.02947 1.19630 0.92646 0.93712 1.07750 1.18208 0.86854 0.75700 0.83874 1.90836 1.69539 1.48810 1.31219 1.46006 1.07667 1.75293 1.08482 1.21380 0.77998 1.03710 0.97259 1.22250 0.89236 1.01243 0.95666 1.61434 1.04697 1.36424 1.21328 1.22649 1.04058 0.87669 0.98712 1.21900 0.95876 1.01318 0.89614 1.19602 0.87642 0.84087 0.84889 1.90539 1.70853 1.54458 1.28044 1.42205 1.08947 1.64990 1.06910 1.19434 0.80759 1.45646 0.97506 0.86237 1.25032 0.95455 0.97586 0.98060 1.69615 1.05743 1.47475 1.29261 0.86676 0.79605 0.78834 0.84276 1.19605 1.20203 1.19575 1.19855 0.93674 0.94003 0.96721 1.20893 1.00028 0.93746 1.03197 1.20821 0.92960 0.97860 1.03171 0.90837 0.91319 0.91300 0.85497 0.90464 0.90801 0.90969 0.76568 0.90041 0.90986 0.94500 0.90226 0.96527 0.88297 0.91660 0.93237 0.89184 0.79753 0.91614 0.90372 0.90852 0.91388 0.85529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.50 10.00 36.00 0.36 -0.14 16 2 C -0.06 -0.44 5.89 -104.53 -0.62 -1.06 16 3 C -0.13 -0.97 9.34 -39.64 -0.37 -1.34 16 4 C -0.04 -0.36 5.91 -104.23 -0.62 -0.98 16 5 C -0.12 -0.99 9.62 36.00 0.35 -0.65 16 6 C -0.13 -1.36 5.63 -104.97 -0.59 -1.95 16 7 C 0.57 6.73 4.19 -12.33 -0.05 6.68 16 8 O -0.53 -8.48 17.10 5.32 0.09 -8.39 16 9 N -0.72 -6.96 5.55 -61.25 -0.34 -7.30 16 10 C 0.12 1.37 5.60 -4.04 -0.02 1.35 16 11 C 0.04 0.49 5.07 -3.83 -0.02 0.48 16 12 N -0.51 -7.93 4.50 -244.37 -1.10 -9.03 16 13 C 0.02 0.26 8.96 60.07 0.54 0.80 16 14 C 0.04 0.72 5.45 -4.97 -0.03 0.69 16 15 C 0.45 10.10 7.47 -10.99 -0.08 10.01 16 16 O -0.56 -14.70 13.91 5.55 0.08 -14.63 16 17 N -0.59 -13.88 5.09 -10.96 -0.06 -13.93 16 18 C -0.30 -8.55 10.16 -14.93 -0.15 -8.71 16 19 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 20 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 21 N -0.88 -25.62 13.96 55.50 0.77 -24.85 16 22 Si 0.88 19.15 27.73 -169.99 -4.71 14.43 16 23 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 26 C -0.04 -0.37 5.91 -104.23 -0.62 -0.99 16 27 C -0.12 -0.94 9.62 36.01 0.35 -0.59 16 28 C -0.13 -0.96 9.34 -39.64 -0.37 -1.33 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 31 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 32 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 35 H 0.07 0.73 7.08 -51.93 -0.37 0.36 16 36 H 0.40 2.83 8.46 -40.82 -0.35 2.49 16 37 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.07 0.90 6.55 -51.93 -0.34 0.56 16 39 H 0.04 0.36 8.12 -51.93 -0.42 -0.06 16 40 H 0.08 0.77 7.93 -51.93 -0.41 0.36 16 41 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.10 1.89 5.82 -51.93 -0.30 1.59 16 43 H 0.06 0.92 6.47 -51.93 -0.34 0.58 16 44 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 45 H 0.09 1.24 7.93 -51.93 -0.41 0.83 16 46 H 0.37 7.58 5.76 -40.82 -0.24 7.35 16 47 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 48 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 49 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 50 H 0.07 0.57 7.07 -51.93 -0.37 0.20 16 51 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 416.43 15.07 6.28 6.28 Total: -1.00 -35.08 416.43 -9.19 -44.27 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -8.16 Total: 9.85 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -2.04 Total: 3.30 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: -0.72 Total: -55.11 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: 0.17 Total: -23.02 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.71 Total: 14.43 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -35.08 -9.19 -44.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753072117.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.499 kcal (2) G-P(sol) polarization free energy of solvation -35.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds