Wall clock time and date at job start Wed Apr 1 2020 04:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38355 * 119.85878 * 2 1 4 4 C 1.37951 * 120.15117 * 179.97438 * 3 2 1 5 5 C 1.50698 * 120.07735 * 180.02562 * 4 3 2 6 6 C 1.39582 * 119.84949 * 0.02562 * 4 3 2 7 7 C 1.47850 * 120.14154 * 179.97438 * 6 4 3 8 8 O 1.21553 * 120.00185 * 90.00011 * 7 6 4 9 9 N 1.34777 * 119.99831 * 269.71966 * 7 6 4 10 10 C 1.46499 * 120.00199 * 180.27510 * 9 7 6 11 11 C 1.52997 * 109.47551 * 180.02562 * 10 9 7 12 12 N 1.46893 * 109.47217 * 180.02562 * 11 10 9 13 13 C 1.46908 * 111.00230 * 66.04709 * 12 11 10 14 14 C 1.46908 * 110.99875 * 189.99741 * 12 11 10 15 15 C 1.50696 * 109.47148 * 170.00121 * 14 12 11 16 16 O 1.21294 * 120.00143 * 359.97438 * 15 14 12 17 17 N 1.34773 * 119.99968 * 180.02562 * 15 14 12 18 18 C 1.37107 * 119.99826 * 179.97438 * 17 15 14 19 19 H 1.07995 * 119.99789 * 0.02562 * 18 17 15 20 20 C 1.38953 * 119.99829 * 179.97438 * 18 17 15 21 21 N 1.31401 * 119.99869 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99777 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46892 * 90.00023 * 22 20 18 24 24 H 1.48499 * 109.46937 * 209.99519 * 22 20 18 25 25 H 1.48498 * 109.47668 * 329.99837 * 22 20 18 26 26 C 1.39569 * 119.71017 * 0.24996 * 6 4 3 27 27 C 1.50705 * 120.07038 * 179.72433 * 26 6 4 28 28 C 1.37957 * 119.85643 * 359.47467 * 26 6 4 29 29 H 1.09001 * 109.46832 * 89.99927 * 1 2 3 30 30 H 1.09004 * 109.47439 * 209.99755 * 1 2 3 31 31 H 1.09000 * 109.47092 * 330.00489 * 1 2 3 32 32 H 1.08002 * 119.92144 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.47235 * 269.97921 * 5 4 3 34 34 H 1.09001 * 109.47202 * 29.97824 * 5 4 3 35 35 H 1.09003 * 109.47390 * 149.97905 * 5 4 3 36 36 H 0.97001 * 119.99727 * 0.28406 * 9 7 6 37 37 H 1.08998 * 109.47134 * 300.00670 * 10 9 7 38 38 H 1.09002 * 109.46857 * 59.99862 * 10 9 7 39 39 H 1.09007 * 109.46479 * 300.00271 * 11 10 9 40 40 H 1.09003 * 109.47114 * 59.99483 * 11 10 9 41 41 H 1.08999 * 109.47255 * 59.99633 * 13 12 11 42 42 H 1.08997 * 109.46898 * 179.97438 * 13 12 11 43 43 H 1.08998 * 109.46687 * 299.99809 * 13 12 11 44 44 H 1.08997 * 109.46835 * 290.00095 * 14 12 11 45 45 H 1.08997 * 109.46909 * 49.99542 * 14 12 11 46 46 H 0.96997 * 120.00260 * 359.97438 * 17 15 14 47 47 H 0.96999 * 120.00337 * 180.02562 * 21 20 18 48 48 H 1.09001 * 109.46898 * 90.00261 * 27 26 6 49 49 H 1.08999 * 109.46910 * 209.99947 * 27 26 6 50 50 H 1.09001 * 109.47632 * 330.00134 * 27 26 6 51 51 H 1.07997 * 119.92986 * 180.27570 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1999 0.0000 4 6 3.5753 1.2069 0.0005 5 6 4.3238 2.5148 0.0011 6 6 4.2762 -0.0002 0.0005 7 6 5.7547 -0.0001 0.0005 8 8 6.3625 -0.0001 1.0532 9 7 6.4285 -0.0059 -1.1667 10 6 7.8935 -0.0119 -1.1667 11 6 8.4035 -0.0170 -2.6092 12 7 9.8724 -0.0237 -2.6092 13 6 10.3932 -1.2784 -2.0500 14 6 10.3999 0.2094 -3.9603 15 6 11.8873 0.4401 -3.8860 16 8 12.4523 0.4134 -2.8130 17 7 12.5895 0.6770 -5.0116 18 6 13.9427 0.8874 -4.9439 19 1 14.4458 0.8628 -3.9886 20 6 14.6668 1.1311 -6.1045 21 7 15.9637 1.3322 -6.0397 22 14 13.7967 1.1715 -7.7570 23 1 13.3445 2.5564 -8.0446 24 1 14.7327 0.7257 -8.8202 25 1 12.6214 0.2646 -7.7201 26 6 3.5752 -1.2070 -0.0053 27 6 4.3238 -2.5150 -0.0116 28 6 2.1957 -1.2001 0.0000 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6522 2.1331 -0.0004 33 1 4.5051 2.8302 -1.0264 34 1 3.7316 3.2723 0.5146 35 1 5.2764 2.3881 0.5156 36 1 5.9435 -0.0058 -2.0067 37 1 8.2605 0.8777 -0.6551 38 1 8.2531 -0.9022 -0.6507 39 1 8.0364 -0.9066 -3.1212 40 1 8.0438 0.8734 -3.1249 41 1 10.0399 -2.1176 -2.6492 42 1 11.4829 -1.2570 -2.0623 43 1 10.0432 -1.3918 -1.0240 44 1 10.1980 -0.6611 -4.5844 45 1 9.9174 1.0860 -4.3925 46 1 12.1377 0.6987 -5.8697 47 1 16.4692 1.5028 -6.8498 48 1 4.5042 -2.8353 1.0145 49 1 3.7318 -3.2699 -0.5291 50 1 5.2767 -2.3859 -0.5248 51 1 1.6521 -2.1333 0.0000 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753072117.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:47 Heat of formation + Delta-G solvation = -73.242605 kcal Electronic energy + Delta-G solvation = -29565.015821 eV Core-core repulsion = 25462.993004 eV Total energy + Delta-G solvation = -4102.022818 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.55979 -40.52492 -39.70887 -38.20858 -36.05725 -35.54777 -34.62429 -34.47853 -33.74446 -30.91485 -29.30726 -28.91873 -28.20202 -27.71274 -26.92327 -25.21204 -22.94639 -22.33242 -21.81812 -21.25718 -20.98877 -20.16834 -18.73347 -17.75345 -17.47102 -17.42346 -16.80140 -16.71357 -16.32992 -15.98396 -15.54948 -15.37959 -15.28982 -15.13147 -14.97917 -14.80239 -14.39747 -14.30011 -14.19321 -14.15193 -14.00888 -13.96670 -13.71918 -13.62304 -13.30032 -13.10010 -12.96834 -12.65529 -12.59925 -12.56490 -12.41524 -12.39739 -12.19154 -12.14924 -11.96511 -11.95219 -11.46007 -11.09744 -10.37350 -10.22610 -10.21036 -9.58697 -9.56764 -9.25471 -8.39748 -6.00716 0.10393 0.35396 1.30912 1.37202 1.45260 1.45833 1.94532 1.98163 2.24596 2.60193 2.75215 3.16051 3.27576 3.63787 3.75390 3.75879 3.84128 3.90790 4.04190 4.12731 4.31367 4.34793 4.36434 4.43831 4.45067 4.45631 4.57403 4.61330 4.61962 4.62794 4.65548 4.67995 4.78603 4.83746 4.88421 4.92012 4.94435 5.05557 5.19919 5.25339 5.27098 5.28219 5.43332 5.47830 5.54342 5.61276 5.87303 5.97823 5.99217 6.13114 6.40913 6.61593 6.90549 7.09893 7.41856 8.00118 8.78062 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021744 B = 0.001681 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.419337 B =16651.694202 C =16947.179350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.063 4.063 3 C -0.134 4.134 4 C -0.052 4.052 5 C -0.122 4.122 6 C -0.158 4.158 7 C 0.572 3.428 8 O -0.581 6.581 9 N -0.705 5.705 10 C 0.127 3.873 11 C 0.055 3.945 12 N -0.542 5.542 13 C 0.023 3.977 14 C 0.057 3.943 15 C 0.449 3.551 16 O -0.607 6.607 17 N -0.591 5.591 18 C -0.328 4.328 19 H 0.053 0.947 20 C -0.016 4.016 21 N -0.936 5.936 22 Si 0.966 3.034 23 H -0.257 1.257 24 H -0.277 1.277 25 H -0.229 1.229 26 C -0.052 4.052 27 C -0.121 4.121 28 C -0.134 4.134 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.148 0.852 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.043 0.957 36 H 0.416 0.584 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.103 0.897 41 H 0.040 0.960 42 H 0.054 0.946 43 H 0.070 0.930 44 H 0.084 0.916 45 H 0.126 0.874 46 H 0.390 0.610 47 H 0.279 0.721 48 H 0.069 0.931 49 H 0.096 0.904 50 H 0.057 0.943 51 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -38.865 -4.618 3.287 39.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.063 4.063 3 C -0.151 4.151 4 C -0.053 4.053 5 C -0.178 4.178 6 C -0.161 4.161 7 C 0.359 3.641 8 O -0.460 6.460 9 N -0.357 5.357 10 C 0.003 3.997 11 C -0.073 4.073 12 N -0.267 5.267 13 C -0.125 4.125 14 C -0.074 4.074 15 C 0.237 3.763 16 O -0.491 6.491 17 N -0.234 5.234 18 C -0.458 4.458 19 H 0.071 0.929 20 C -0.215 4.215 21 N -0.577 5.577 22 Si 0.786 3.214 23 H -0.181 1.181 24 H -0.202 1.202 25 H -0.152 1.152 26 C -0.053 4.053 27 C -0.177 4.177 28 C -0.151 4.151 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.165 0.835 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.063 0.937 36 H 0.253 0.747 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.121 0.879 41 H 0.058 0.942 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.102 0.898 45 H 0.144 0.856 46 H 0.226 0.774 47 H 0.088 0.912 48 H 0.087 0.913 49 H 0.115 0.885 50 H 0.076 0.924 51 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -37.668 -4.216 4.947 38.224 hybrid contribution 0.548 -0.454 -1.316 1.496 sum -37.120 -4.670 3.631 37.588 Atomic orbital electron populations 1.20901 0.88773 1.03969 1.03574 1.20417 0.97779 0.92535 0.95551 1.21105 0.92377 0.99158 1.02507 1.20043 0.94532 0.93811 0.96905 1.20904 0.99357 0.94004 1.03558 1.19603 0.91342 0.94955 1.10165 1.18553 0.87743 0.74373 0.83420 1.90802 1.70767 1.51362 1.33113 1.45807 1.06918 1.74130 1.08807 1.21167 0.78912 1.01909 0.97706 1.22234 0.86201 1.03624 0.95230 1.61295 1.07504 1.36598 1.21322 1.22471 1.01248 0.88913 0.99847 1.21835 0.90506 1.04287 0.90730 1.20951 0.90443 0.81299 0.83611 1.90533 1.72801 1.55715 1.30077 1.42016 1.07195 1.65754 1.08400 1.18995 0.83239 1.47913 0.95604 0.92878 1.26136 0.96129 0.95999 1.03207 1.69808 1.08210 1.48542 1.31128 0.85347 0.79357 0.80298 0.76384 1.18112 1.20196 1.15211 1.20040 0.94527 0.93789 0.96955 1.20902 0.99898 0.94097 1.02835 1.21110 0.92390 0.99136 1.02493 0.89658 0.90418 0.90461 0.83456 0.89197 0.89281 0.93749 0.74665 0.92562 0.92340 0.91729 0.87916 0.94169 0.92767 0.91104 0.89846 0.85624 0.77445 0.91205 0.91258 0.88506 0.92440 0.83387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 10.00 71.23 0.71 0.11 16 2 C -0.06 -0.70 5.89 -19.81 -0.12 -0.82 16 3 C -0.13 -1.69 9.34 22.23 0.21 -1.49 16 4 C -0.05 -0.88 5.91 -19.61 -0.12 -1.00 16 5 C -0.12 -1.86 9.62 71.24 0.69 -1.18 16 6 C -0.16 -3.12 5.63 -20.09 -0.11 -3.23 16 7 C 0.57 13.77 4.19 86.79 0.36 14.13 16 8 O -0.58 -19.69 17.10 -3.88 -0.07 -19.76 16 9 N -0.70 -12.93 5.55 -465.97 -2.58 -15.51 16 10 C 0.13 2.83 5.60 86.38 0.48 3.32 16 11 C 0.05 1.04 5.07 86.30 0.44 1.47 16 12 N -0.54 -15.73 4.50 -927.04 -4.17 -19.90 16 13 C 0.02 0.71 8.96 127.69 1.14 1.85 16 14 C 0.06 1.66 5.45 85.55 0.47 2.13 16 15 C 0.45 20.03 7.47 87.66 0.66 20.69 16 16 O -0.61 -33.68 13.91 -3.07 -0.04 -33.73 16 17 N -0.59 -27.53 5.09 -306.99 -1.56 -29.09 16 18 C -0.33 -19.24 10.16 84.04 0.85 -18.38 16 19 H 0.05 3.73 7.39 -2.91 -0.02 3.71 16 20 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 21 N -0.94 -56.63 13.96 21.66 0.30 -56.33 16 22 Si 0.97 38.27 27.73 68.60 1.90 40.17 16 23 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 24 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 25 H -0.23 -7.48 6.52 99.48 0.65 -6.84 16 26 C -0.05 -0.87 5.91 -19.61 -0.12 -0.98 16 27 C -0.12 -1.74 9.62 71.24 0.69 -1.06 16 28 C -0.13 -1.66 9.34 22.23 0.21 -1.45 16 29 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.08 0.29 8.08 -2.38 -0.02 0.27 16 31 H 0.08 0.30 8.08 -2.39 -0.02 0.28 16 32 H 0.15 1.18 8.06 -2.91 -0.02 1.15 16 33 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.09 1.04 8.09 -2.39 -0.02 1.02 16 35 H 0.04 0.93 7.08 -2.39 -0.02 0.91 16 36 H 0.42 4.96 8.46 -92.71 -0.78 4.17 16 37 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.06 1.47 6.55 -2.39 -0.02 1.46 16 39 H 0.06 0.93 8.12 -2.38 -0.02 0.91 16 40 H 0.10 1.52 7.93 -2.39 -0.02 1.50 16 41 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.05 2.16 5.82 -2.39 -0.01 2.15 16 43 H 0.07 2.03 6.47 -2.39 -0.02 2.01 16 44 H 0.08 1.94 8.12 -2.39 -0.02 1.92 16 45 H 0.13 2.83 7.93 -2.39 -0.02 2.81 16 46 H 0.39 14.77 5.76 -92.71 -0.53 14.24 16 47 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 48 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.10 0.88 8.09 -2.39 -0.02 0.86 16 50 H 0.06 0.93 7.07 -2.39 -0.02 0.91 16 51 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 Total: -1.00 -85.77 416.43 0.26 -85.51 By element: Atomic # 1 Polarization: 35.39 SS G_CDS: -0.42 Total: 34.96 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: 6.91 Total: 13.68 kcal Atomic # 7 Polarization: -112.82 SS G_CDS: -8.02 Total: -120.84 kcal Atomic # 8 Polarization: -53.38 SS G_CDS: -0.11 Total: -53.49 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 1.90 Total: 40.17 kcal Total: -85.77 0.26 -85.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753072117.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.270 kcal (2) G-P(sol) polarization free energy of solvation -85.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds